Wall clock time and date at job start Wed Apr 1 2020 05:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47389 * 2 1 4 4 O 1.42901 * 109.47051 * 239.99621 * 2 1 3 5 5 C 1.42904 * 114.00092 * 89.99949 * 4 2 1 6 6 C 1.50694 * 109.47498 * 180.02562 * 5 4 2 7 7 C 1.38651 * 120.79006 * 269.72332 * 6 5 4 8 8 C 1.38202 * 119.16350 * 179.79723 * 7 6 5 9 9 N 1.31875 * 120.76287 * 0.48428 * 8 7 6 10 10 C 1.31874 * 121.72617 * 359.74097 * 9 8 7 11 11 C 1.38207 * 120.76347 * 0.02718 * 10 9 8 12 12 C 1.50705 * 109.47165 * 120.00014 * 2 1 3 13 13 O 1.21286 * 119.99903 * 119.99651 * 12 2 1 14 14 N 1.34770 * 119.99731 * 299.99669 * 12 2 1 15 15 C 1.46504 * 119.99886 * 179.97438 * 14 12 2 16 16 H 1.08996 * 110.78140 * 328.24698 * 15 14 12 17 17 C 1.54327 * 110.71580 * 91.47998 * 15 14 12 18 18 N 1.47019 * 107.27075 * 96.17125 * 17 15 14 19 19 C 1.36946 * 125.64769 * 178.98361 * 18 17 15 20 20 H 1.07994 * 119.99609 * 174.78349 * 19 18 17 21 21 C 1.38812 * 119.99686 * 354.78653 * 19 18 17 22 22 N 1.31616 * 120.00225 * 7.05378 * 21 19 18 23 23 Si 1.86795 * 119.99458 * 187.05043 * 21 19 18 24 24 H 1.48497 * 109.47207 * 94.99031 * 23 21 19 25 25 H 1.48506 * 109.47268 * 214.98527 * 23 21 19 26 26 H 1.48500 * 109.47548 * 334.98751 * 23 21 19 27 27 C 1.47424 * 108.70460 * 358.93819 * 18 17 15 28 28 C 1.54912 * 104.83119 * 24.12958 * 27 18 17 29 29 C 1.52997 * 111.00442 * 204.91635 * 28 27 18 30 30 C 1.52998 * 111.03578 * 81.07762 * 28 27 18 31 31 H 1.08998 * 109.47208 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47030 * 300.00321 * 1 2 3 33 33 H 1.08997 * 109.47331 * 60.00055 * 1 2 3 34 34 H 1.08997 * 109.46994 * 300.00416 * 5 4 2 35 35 H 1.09002 * 109.46713 * 59.99817 * 5 4 2 36 36 H 1.08000 * 120.41924 * 359.97438 * 7 6 5 37 37 H 1.08003 * 119.62182 * 180.25153 * 8 7 6 38 38 H 1.07998 * 119.61705 * 179.97438 * 10 9 8 39 39 H 1.07994 * 120.41988 * 180.02562 * 11 10 9 40 40 H 0.96999 * 120.00251 * 0.02562 * 14 12 2 41 41 H 1.09004 * 109.88234 * 215.58592 * 17 15 14 42 42 H 1.09000 * 109.88106 * 336.59742 * 17 15 14 43 43 H 0.97000 * 119.99907 * 179.97438 * 22 21 19 44 44 H 1.08998 * 110.36552 * 265.28833 * 27 18 17 45 45 H 1.09004 * 110.36704 * 142.96251 * 27 18 17 46 46 H 1.08998 * 109.46940 * 172.19933 * 29 28 27 47 47 H 1.09000 * 109.47139 * 52.19483 * 29 28 27 48 48 H 1.09005 * 109.47241 * 292.19352 * 29 28 27 49 49 H 1.09001 * 109.47250 * 184.60453 * 30 28 27 50 50 H 1.09005 * 109.47371 * 304.60235 * 30 28 27 51 51 H 1.08996 * 109.47449 * 64.60928 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2000 0.1828 -2.2941 6 6 2.7002 -0.6286 -3.4614 7 6 4.0590 -0.8078 -3.6709 8 6 4.4804 -1.5618 -4.7497 9 7 3.6073 -2.0991 -5.5793 10 6 2.3081 -1.9457 -5.4137 11 6 1.8125 -1.2088 -4.3547 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6966 1.1192 14 7 1.7068 -0.2499 2.4545 15 6 2.1947 -0.9408 3.6507 16 1 2.2937 -2.0105 3.4661 17 6 3.5375 -0.3408 4.1182 18 7 3.2344 0.6402 5.1704 19 6 4.1567 1.3808 5.8607 20 1 3.8288 2.1377 6.5578 21 6 5.5127 1.1586 5.6642 22 7 5.9147 0.3373 4.7175 23 14 6.7670 2.0253 6.7435 24 1 7.1464 1.1378 7.8720 25 1 7.9736 2.3470 5.9397 26 1 6.1785 3.2801 7.2767 27 6 1.7733 0.6955 5.3587 28 6 1.2568 -0.6766 4.8582 29 6 -0.2026 -0.5824 4.4087 30 6 1.4286 -1.7529 5.9319 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8899 34 1 1.2538 0.6545 -2.5589 35 1 2.9319 0.9512 -2.0451 36 1 4.7790 -0.3662 -2.9978 37 1 5.5370 -1.7096 -4.9176 38 1 1.6234 -2.4006 -6.1141 39 1 0.7475 -1.0871 -4.2241 40 1 1.1488 0.5386 2.5435 41 1 4.1761 -1.1284 4.5185 42 1 4.0350 0.1506 3.2821 43 1 6.8623 0.1824 4.5800 44 1 1.3445 1.5021 4.7641 45 1 1.5315 0.8302 6.4130 46 1 -0.4980 -1.5187 3.9352 47 1 -0.3113 0.2353 3.6963 48 1 -0.8382 -0.3969 5.2746 49 1 1.1343 -2.7209 5.5263 50 1 2.4724 -1.7918 6.2437 51 1 0.8016 -1.5130 6.7905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734150550.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:18 Heat of formation + Delta-G solvation = -18.090096 kcal Electronic energy + Delta-G solvation = -31066.361958 eV Core-core repulsion = 26966.730732 eV Total energy + Delta-G solvation = -4099.631225 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.42284 -39.95506 -38.53318 -37.25098 -33.94451 -33.63881 -33.07280 -31.41975 -31.19586 -30.69672 -28.02861 -27.10423 -26.82769 -25.65780 -24.44320 -23.67578 -23.09003 -22.20746 -20.52578 -19.88000 -18.81828 -17.55241 -17.09692 -16.73552 -16.67338 -16.45600 -15.81857 -15.67641 -15.18666 -14.78855 -14.37394 -14.15382 -14.01125 -13.89562 -13.84452 -13.77867 -13.41031 -13.20647 -12.88403 -12.58031 -12.55041 -12.22799 -12.02126 -11.98739 -11.76614 -11.67873 -11.41375 -11.35316 -11.08635 -11.01011 -10.80041 -10.40258 -10.25854 -10.10149 -10.02561 -9.94956 -9.89616 -9.70543 -9.66994 -9.35223 -9.25001 -8.62004 -8.45034 -6.84076 -5.71688 -3.05531 0.91064 0.93909 2.94394 3.00728 3.39183 3.44288 3.46814 3.60449 3.95642 4.25815 4.45073 4.48262 4.49678 4.71827 4.81802 4.83707 4.90697 4.91487 5.01464 5.06495 5.14381 5.25763 5.27659 5.37790 5.40559 5.50018 5.52367 5.57385 5.62666 5.73250 5.79581 5.88460 5.90483 6.00757 6.09195 6.15254 6.18731 6.22123 6.37595 6.47034 6.56882 6.58680 6.65787 6.71504 6.85267 6.95722 7.55993 7.61801 7.74617 7.80463 7.91519 8.24286 8.60279 9.20332 9.81368 10.47089 11.39207 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011686 B = 0.002615 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.535193 B =10704.090896 C =12398.293586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.070 3.930 3 H 0.088 0.912 4 O -0.347 6.347 5 C 0.097 3.903 6 C -0.042 4.042 7 C -0.147 4.147 8 C 0.096 3.904 9 N -0.484 5.484 10 C 0.093 3.907 11 C -0.153 4.153 12 C 0.513 3.487 13 O -0.520 6.520 14 N -0.707 5.707 15 C 0.125 3.875 16 H 0.089 0.911 17 C 0.174 3.826 18 N -0.603 5.603 19 C -0.231 4.231 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.916 5.916 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.144 3.856 28 C -0.089 4.089 29 C -0.130 4.130 30 C -0.126 4.126 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.139 0.861 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.135 0.865 40 H 0.394 0.606 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.253 0.747 44 H 0.014 0.986 45 H 0.041 0.959 46 H 0.052 0.948 47 H 0.050 0.950 48 H 0.054 0.946 49 H 0.047 0.953 50 H 0.069 0.931 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.097 0.105 -14.192 20.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.008 3.992 3 H 0.106 0.894 4 O -0.265 6.265 5 C 0.021 3.979 6 C -0.050 4.050 7 C -0.167 4.167 8 C -0.060 4.060 9 N -0.193 5.193 10 C -0.064 4.064 11 C -0.172 4.172 12 C 0.297 3.703 13 O -0.394 6.394 14 N -0.359 5.359 15 C 0.021 3.979 16 H 0.107 0.893 17 C 0.048 3.952 18 N -0.329 5.329 19 C -0.359 4.359 20 H 0.095 0.905 21 C -0.202 4.202 22 N -0.563 5.563 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.017 3.983 28 C -0.091 4.091 29 C -0.188 4.188 30 C -0.183 4.183 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.157 0.843 37 H 0.175 0.825 38 H 0.173 0.827 39 H 0.153 0.847 40 H 0.229 0.771 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.032 0.968 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.987 -1.287 -14.976 19.865 hybrid contribution 0.166 1.703 1.344 2.176 sum -12.822 0.416 -13.632 18.719 Atomic orbital electron populations 1.22231 0.93738 1.03753 1.02938 1.21956 0.94846 0.96630 0.85736 0.89448 1.88122 1.86649 1.33362 1.18400 1.21414 1.00049 0.91765 0.84700 1.19977 0.93700 0.96670 0.94681 1.22172 0.95999 0.99597 0.98942 1.22796 0.99745 0.93013 0.90475 1.67668 1.03356 1.19641 1.28659 1.22751 0.92011 0.95517 0.96115 1.22061 1.00904 0.98403 0.95870 1.20116 0.80919 0.85161 0.84116 1.90731 1.36484 1.25890 1.86334 1.45912 1.53328 1.31581 1.05126 1.22481 0.96085 0.96964 0.82408 0.89258 1.21531 0.89744 0.92431 0.91456 1.44444 0.99498 1.46626 1.42339 1.19014 0.85991 1.13245 1.17695 0.90479 1.24831 0.96935 0.99646 0.98831 1.69977 1.14275 1.39681 1.32317 0.86155 0.81291 0.78722 0.79914 1.21619 1.21837 1.20721 1.21635 0.86305 0.92382 0.97931 1.22016 0.93854 0.97909 0.95306 1.21671 0.95382 1.01110 1.00618 1.21595 1.03094 0.96545 0.97109 0.91051 0.90823 0.91492 0.91831 0.91592 0.84331 0.82462 0.82663 0.84688 0.77073 0.92670 0.93645 0.93679 0.96819 0.94039 0.92844 0.93143 0.92674 0.93360 0.91213 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 9.42 37.16 0.35 -1.17 16 2 C 0.07 0.87 3.14 -27.88 -0.09 0.78 16 3 H 0.09 0.93 7.79 -51.93 -0.40 0.53 16 4 O -0.35 -4.85 9.50 -55.14 -0.52 -5.38 16 5 C 0.10 0.99 5.92 36.00 0.21 1.21 16 6 C -0.04 -0.46 5.55 -104.32 -0.58 -1.03 16 7 C -0.15 -1.61 9.82 -39.44 -0.39 -1.99 16 8 C 0.10 1.03 11.18 -17.55 -0.20 0.83 16 9 N -0.48 -5.64 10.36 -13.25 -0.14 -5.77 16 10 C 0.09 0.91 11.18 -17.55 -0.20 0.71 16 11 C -0.15 -1.44 9.82 -39.44 -0.39 -1.83 16 12 C 0.51 8.72 7.23 -10.99 -0.08 8.64 16 13 O -0.52 -11.40 16.15 -14.36 -0.23 -11.63 16 14 N -0.71 -11.25 4.35 -52.03 -0.23 -11.47 16 15 C 0.13 2.34 2.59 -66.09 -0.17 2.17 16 16 H 0.09 1.78 7.46 -51.93 -0.39 1.39 16 17 C 0.17 4.21 4.77 -3.06 -0.01 4.19 16 18 N -0.60 -14.71 3.38 -170.07 -0.58 -15.29 16 19 C -0.23 -6.29 10.27 -15.05 -0.15 -6.44 16 20 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 21 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 22 N -0.92 -27.05 10.36 55.49 0.57 -26.47 16 23 Si 0.91 22.00 29.56 -169.99 -5.02 16.97 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.14 2.75 6.12 -2.53 -0.02 2.73 16 28 C -0.09 -1.43 0.83 -152.36 -0.13 -1.56 16 29 C -0.13 -1.59 8.22 37.16 0.31 -1.29 16 30 C -0.13 -1.98 8.59 37.16 0.32 -1.66 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.55 7.56 -51.93 -0.39 0.16 16 33 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 34 H 0.06 0.48 7.83 -51.93 -0.41 0.07 16 35 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 36 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 38 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.39 5.24 6.53 -40.82 -0.27 4.98 16 41 H 0.06 1.52 7.30 -51.93 -0.38 1.15 16 42 H 0.05 1.26 7.51 -51.93 -0.39 0.87 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.01 0.26 7.98 -51.93 -0.41 -0.16 16 45 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.55 6.48 -51.93 -0.34 0.21 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.07 1.31 7.86 -51.93 -0.41 0.90 16 51 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 412.46 15.07 6.22 6.22 Total: -1.00 -35.18 412.46 -9.61 -44.80 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -8.38 Total: 3.98 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.30 Total: 4.05 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.36 Total: -59.01 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.76 Total: -17.01 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.18 -9.61 -44.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734150550.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.707 kcal (2) G-P(sol) polarization free energy of solvation -35.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds