Wall clock time and date at job start Wed Apr 1 2020 05:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47389 * 2 1 4 4 O 1.42901 * 109.47051 * 239.99621 * 2 1 3 5 5 C 1.42904 * 114.00092 * 89.99949 * 4 2 1 6 6 C 1.50694 * 109.47498 * 180.02562 * 5 4 2 7 7 C 1.38651 * 120.79006 * 269.72332 * 6 5 4 8 8 C 1.38202 * 119.16350 * 179.79723 * 7 6 5 9 9 N 1.31875 * 120.76287 * 0.48428 * 8 7 6 10 10 C 1.31874 * 121.72617 * 359.74097 * 9 8 7 11 11 C 1.38207 * 120.76347 * 0.02718 * 10 9 8 12 12 C 1.50705 * 109.47165 * 120.00014 * 2 1 3 13 13 O 1.21286 * 119.99903 * 119.99651 * 12 2 1 14 14 N 1.34770 * 119.99731 * 299.99669 * 12 2 1 15 15 C 1.46504 * 119.99886 * 179.97438 * 14 12 2 16 16 H 1.08996 * 110.78140 * 328.24698 * 15 14 12 17 17 C 1.54327 * 110.71580 * 91.47998 * 15 14 12 18 18 N 1.47019 * 107.27075 * 96.17125 * 17 15 14 19 19 C 1.36946 * 125.64769 * 178.98361 * 18 17 15 20 20 H 1.07994 * 119.99609 * 174.78349 * 19 18 17 21 21 C 1.38812 * 119.99686 * 354.78653 * 19 18 17 22 22 N 1.31616 * 120.00225 * 7.05378 * 21 19 18 23 23 Si 1.86795 * 119.99458 * 187.05043 * 21 19 18 24 24 H 1.48497 * 109.47207 * 94.99031 * 23 21 19 25 25 H 1.48506 * 109.47268 * 214.98527 * 23 21 19 26 26 H 1.48500 * 109.47548 * 334.98751 * 23 21 19 27 27 C 1.47424 * 108.70460 * 358.93819 * 18 17 15 28 28 C 1.54912 * 104.83119 * 24.12958 * 27 18 17 29 29 C 1.52997 * 111.00442 * 204.91635 * 28 27 18 30 30 C 1.52998 * 111.03578 * 81.07762 * 28 27 18 31 31 H 1.08998 * 109.47208 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47030 * 300.00321 * 1 2 3 33 33 H 1.08997 * 109.47331 * 60.00055 * 1 2 3 34 34 H 1.08997 * 109.46994 * 300.00416 * 5 4 2 35 35 H 1.09002 * 109.46713 * 59.99817 * 5 4 2 36 36 H 1.08000 * 120.41924 * 359.97438 * 7 6 5 37 37 H 1.08003 * 119.62182 * 180.25153 * 8 7 6 38 38 H 1.07998 * 119.61705 * 179.97438 * 10 9 8 39 39 H 1.07994 * 120.41988 * 180.02562 * 11 10 9 40 40 H 0.96999 * 120.00251 * 0.02562 * 14 12 2 41 41 H 1.09004 * 109.88234 * 215.58592 * 17 15 14 42 42 H 1.09000 * 109.88106 * 336.59742 * 17 15 14 43 43 H 0.97000 * 119.99907 * 179.97438 * 22 21 19 44 44 H 1.08998 * 110.36552 * 265.28833 * 27 18 17 45 45 H 1.09004 * 110.36704 * 142.96251 * 27 18 17 46 46 H 1.08998 * 109.46940 * 172.19933 * 29 28 27 47 47 H 1.09000 * 109.47139 * 52.19483 * 29 28 27 48 48 H 1.09005 * 109.47241 * 292.19352 * 29 28 27 49 49 H 1.09001 * 109.47250 * 184.60453 * 30 28 27 50 50 H 1.09005 * 109.47371 * 304.60235 * 30 28 27 51 51 H 1.08996 * 109.47449 * 64.60928 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2000 0.1828 -2.2941 6 6 2.7002 -0.6286 -3.4614 7 6 4.0590 -0.8078 -3.6709 8 6 4.4804 -1.5618 -4.7497 9 7 3.6073 -2.0991 -5.5793 10 6 2.3081 -1.9457 -5.4137 11 6 1.8125 -1.2088 -4.3547 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6966 1.1192 14 7 1.7068 -0.2499 2.4545 15 6 2.1947 -0.9408 3.6507 16 1 2.2937 -2.0105 3.4661 17 6 3.5375 -0.3408 4.1182 18 7 3.2344 0.6402 5.1704 19 6 4.1567 1.3808 5.8607 20 1 3.8288 2.1377 6.5578 21 6 5.5127 1.1586 5.6642 22 7 5.9147 0.3373 4.7175 23 14 6.7670 2.0253 6.7435 24 1 7.1464 1.1378 7.8720 25 1 7.9736 2.3470 5.9397 26 1 6.1785 3.2801 7.2767 27 6 1.7733 0.6955 5.3587 28 6 1.2568 -0.6766 4.8582 29 6 -0.2026 -0.5824 4.4087 30 6 1.4286 -1.7529 5.9319 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8899 34 1 1.2538 0.6545 -2.5589 35 1 2.9319 0.9512 -2.0451 36 1 4.7790 -0.3662 -2.9978 37 1 5.5370 -1.7096 -4.9176 38 1 1.6234 -2.4006 -6.1141 39 1 0.7475 -1.0871 -4.2241 40 1 1.1488 0.5386 2.5435 41 1 4.1761 -1.1284 4.5185 42 1 4.0350 0.1506 3.2821 43 1 6.8623 0.1824 4.5800 44 1 1.3445 1.5021 4.7641 45 1 1.5315 0.8302 6.4130 46 1 -0.4980 -1.5187 3.9352 47 1 -0.3113 0.2353 3.6963 48 1 -0.8382 -0.3969 5.2746 49 1 1.1343 -2.7209 5.5263 50 1 2.4724 -1.7918 6.2437 51 1 0.8016 -1.5130 6.7905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734150550.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:17 Heat of formation + Delta-G solvation = -41.334372 kcal Electronic energy + Delta-G solvation = -31067.369905 eV Core-core repulsion = 26966.730732 eV Total energy + Delta-G solvation = -4100.639173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.44260 -41.08844 -39.82748 -38.47709 -35.70778 -34.73874 -34.29690 -32.61748 -32.16916 -32.12189 -29.64469 -28.05919 -27.88469 -27.41020 -25.70914 -24.56009 -24.42102 -22.99032 -22.21693 -21.34513 -20.19931 -18.70026 -18.56989 -18.12910 -17.54448 -17.42808 -17.02209 -16.74964 -16.52988 -16.13220 -15.75648 -15.53389 -15.39065 -15.29999 -14.83495 -14.72300 -14.55677 -14.25876 -14.00836 -13.81739 -13.60836 -13.42979 -13.33213 -13.13934 -13.01727 -12.92782 -12.81344 -12.70824 -12.56414 -12.50008 -12.26938 -12.09794 -11.86334 -11.74041 -11.52871 -11.30395 -11.09070 -10.76953 -10.74984 -10.49669 -10.46583 -10.10885 -9.98438 -8.88711 -7.84944 -5.20190 0.11603 0.17773 1.43531 1.45798 1.54453 1.62460 1.89717 2.48620 2.69865 3.08461 3.33609 3.49896 3.55714 3.61569 3.73315 3.74867 3.79581 3.94545 3.96822 4.08199 4.09819 4.11770 4.18441 4.37846 4.41087 4.41577 4.52514 4.67902 4.69335 4.74315 4.84606 4.86442 4.86542 4.90877 4.97055 4.97447 5.05927 5.14603 5.17657 5.23783 5.31486 5.33453 5.37704 5.47328 5.57843 5.70788 5.73429 5.73764 6.00834 6.17470 6.60987 6.97532 7.07780 7.29888 7.78073 8.42624 9.24704 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011686 B = 0.002615 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.535193 B =10704.090896 C =12398.293586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.075 3.925 3 H 0.109 0.891 4 O -0.381 6.381 5 C 0.095 3.905 6 C -0.059 4.059 7 C -0.166 4.166 8 C 0.084 3.916 9 N -0.509 5.509 10 C 0.085 3.915 11 C -0.150 4.150 12 C 0.505 3.495 13 O -0.580 6.580 14 N -0.693 5.693 15 C 0.138 3.862 16 H 0.073 0.927 17 C 0.192 3.808 18 N -0.620 5.620 19 C -0.234 4.234 20 H 0.088 0.912 21 C -0.070 4.070 22 N -0.952 5.952 23 Si 0.975 3.025 24 H -0.290 1.290 25 H -0.300 1.300 26 H -0.262 1.262 27 C 0.138 3.862 28 C -0.074 4.074 29 C -0.123 4.123 30 C -0.125 4.125 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.138 0.862 37 H 0.172 0.828 38 H 0.184 0.816 39 H 0.164 0.836 40 H 0.412 0.588 41 H 0.004 0.996 42 H -0.002 1.002 43 H 0.242 0.758 44 H 0.036 0.964 45 H 0.049 0.951 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.078 0.922 49 H 0.064 0.936 50 H 0.027 0.973 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.138 1.825 -14.262 23.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.014 3.986 3 H 0.126 0.874 4 O -0.300 6.300 5 C 0.019 3.981 6 C -0.068 4.068 7 C -0.185 4.185 8 C -0.072 4.072 9 N -0.219 5.219 10 C -0.071 4.071 11 C -0.169 4.169 12 C 0.291 3.709 13 O -0.459 6.459 14 N -0.346 5.346 15 C 0.032 3.968 16 H 0.091 0.909 17 C 0.065 3.935 18 N -0.346 5.346 19 C -0.363 4.363 20 H 0.106 0.894 21 C -0.262 4.262 22 N -0.601 5.601 23 Si 0.803 3.197 24 H -0.217 1.217 25 H -0.227 1.227 26 H -0.186 1.186 27 C 0.013 3.987 28 C -0.075 4.075 29 C -0.181 4.181 30 C -0.182 4.182 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.156 0.844 37 H 0.189 0.811 38 H 0.201 0.799 39 H 0.182 0.818 40 H 0.250 0.750 41 H 0.022 0.978 42 H 0.016 0.984 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.097 0.903 49 H 0.083 0.917 50 H 0.046 0.954 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.104 0.490 -15.028 22.774 hybrid contribution 1.418 1.160 1.362 2.283 sum -15.686 1.650 -13.666 20.870 Atomic orbital electron populations 1.22233 0.90257 1.03871 1.05429 1.22031 0.97209 0.96207 0.83112 0.87389 1.88077 1.87179 1.35202 1.19503 1.21611 1.01886 0.91236 0.83330 1.20258 0.93859 0.97243 0.95396 1.22326 0.96668 1.00237 0.99310 1.23071 1.00611 0.93057 0.90495 1.67698 1.04446 1.20417 1.29306 1.23295 0.91833 0.95272 0.96722 1.22376 1.02161 0.97340 0.95029 1.21169 0.79587 0.84514 0.85599 1.90704 1.39133 1.28782 1.87239 1.45708 1.52893 1.31817 1.04175 1.22036 0.94307 0.95760 0.84693 0.90937 1.21083 0.91946 0.90702 0.89722 1.44686 1.01862 1.46000 1.42062 1.19468 0.86730 1.13014 1.17122 0.89392 1.25683 0.99143 1.01089 1.00332 1.70246 1.13644 1.41888 1.34361 0.85108 0.78470 0.78260 0.77824 1.21745 1.22744 1.18647 1.21923 0.83133 0.94690 0.98918 1.21989 0.95992 0.96035 0.93518 1.21652 0.91779 1.02512 1.02113 1.21599 1.00975 0.97575 0.98088 0.92101 0.88774 0.88541 0.88341 0.91404 0.84430 0.81057 0.79891 0.81841 0.75030 0.97833 0.98405 0.94834 0.94608 0.93301 0.91862 0.91284 0.90343 0.91726 0.95380 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.42 71.98 0.68 -1.57 16 2 C 0.08 1.74 3.14 29.85 0.09 1.83 16 3 H 0.11 2.03 7.79 -2.39 -0.02 2.01 16 4 O -0.38 -10.28 9.50 -129.94 -1.23 -11.51 16 5 C 0.10 1.78 5.92 71.23 0.42 2.20 16 6 C -0.06 -1.24 5.55 -19.67 -0.11 -1.35 16 7 C -0.17 -3.72 9.82 22.36 0.22 -3.50 16 8 C 0.08 1.84 11.18 84.68 0.95 2.79 16 9 N -0.51 -11.76 10.36 -195.84 -2.03 -13.79 16 10 C 0.09 1.55 11.18 84.68 0.95 2.50 16 11 C -0.15 -2.56 9.82 22.36 0.22 -2.34 16 12 C 0.50 17.20 7.23 87.66 0.63 17.83 16 13 O -0.58 -26.70 16.15 15.99 0.26 -26.44 16 14 N -0.69 -21.48 4.35 -436.91 -1.90 -23.37 16 15 C 0.14 5.26 2.59 46.18 0.12 5.38 16 16 H 0.07 3.03 7.46 -2.39 -0.02 3.01 16 17 C 0.19 9.86 4.77 86.73 0.41 10.28 16 18 N -0.62 -30.84 3.38 -691.97 -2.34 -33.18 16 19 C -0.23 -12.91 10.27 84.03 0.86 -12.05 16 20 H 0.09 4.55 7.84 -2.91 -0.02 4.53 16 21 C -0.07 -4.03 5.48 84.86 0.46 -3.56 16 22 N -0.95 -59.75 10.36 21.65 0.22 -59.53 16 23 Si 0.97 46.40 29.56 68.60 2.03 48.42 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 26 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 27 C 0.14 5.02 6.12 86.86 0.53 5.55 16 28 C -0.07 -2.24 0.83 -50.79 -0.04 -2.28 16 29 C -0.12 -2.44 8.22 71.98 0.59 -1.85 16 30 C -0.12 -3.78 8.59 71.98 0.62 -3.16 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 0.93 7.56 -2.39 -0.02 0.92 16 33 H 0.10 0.83 7.87 -2.39 -0.02 0.81 16 34 H 0.10 1.12 7.83 -2.39 -0.02 1.10 16 35 H 0.07 1.21 8.04 -2.39 -0.02 1.19 16 36 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 37 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 38 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.41 9.77 6.53 -92.71 -0.61 9.16 16 41 H 0.00 0.21 7.30 -2.38 -0.02 0.20 16 42 H 0.00 -0.13 7.51 -2.39 -0.02 -0.15 16 43 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 44 H 0.04 1.18 7.98 -2.39 -0.02 1.17 16 45 H 0.05 1.73 8.05 -2.38 -0.02 1.71 16 46 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.07 1.13 6.48 -2.39 -0.02 1.12 16 48 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 49 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.03 1.06 7.86 -2.38 -0.02 1.05 16 51 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -84.52 412.46 2.93 -81.59 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.31 Total: 21.11 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 7.61 Total: 16.69 kcal Atomic # 7 Polarization: -123.82 SS G_CDS: -6.04 Total: -129.87 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.98 Total: -37.96 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -84.52 2.93 -81.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734150550.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.257 kcal (2) G-P(sol) polarization free energy of solvation -84.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds