Wall clock time and date at job start Wed Apr 1 2020 04:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47179 * 2 1 4 4 O 1.42897 * 109.47073 * 120.00348 * 2 1 3 5 5 C 1.42895 * 114.00222 * 269.99673 * 4 2 1 6 6 C 1.50698 * 109.47465 * 179.97438 * 5 4 2 7 7 C 1.38656 * 120.79065 * 269.72017 * 6 5 4 8 8 C 1.38199 * 119.15823 * 179.75362 * 7 6 5 9 9 N 1.31870 * 120.76660 * 0.53083 * 8 7 6 10 10 C 1.31867 * 121.72475 * 359.74235 * 9 8 7 11 11 C 1.38203 * 120.76521 * 359.97438 * 10 9 8 12 12 C 1.50702 * 109.46922 * 240.00168 * 2 1 3 13 13 O 1.21282 * 120.00103 * 245.00229 * 12 2 1 14 14 N 1.34786 * 120.00009 * 65.00129 * 12 2 1 15 15 C 1.47485 * 127.03052 * 0.02562 * 14 12 2 16 16 C 1.54005 * 107.24392 * 154.61643 * 15 14 12 17 17 H 1.09001 * 110.32306 * 242.31588 * 16 15 14 18 18 N 1.46496 * 110.32767 * 120.10236 * 16 15 14 19 19 C 1.36938 * 120.00289 * 86.45241 * 18 16 15 20 20 H 1.07995 * 119.99769 * 0.02562 * 19 18 16 21 21 C 1.38810 * 119.99829 * 180.02562 * 19 18 16 22 22 N 1.31611 * 120.00272 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99737 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47037 * 89.99978 * 23 21 19 25 25 H 1.48496 * 109.47089 * 209.99789 * 23 21 19 26 26 H 1.48502 * 109.47141 * 330.00191 * 23 21 19 27 27 C 1.54616 * 105.04550 * 1.20635 * 16 15 14 28 28 C 1.52999 * 110.73839 * 140.18699 * 27 16 15 29 29 C 1.53004 * 110.74066 * 263.33330 * 27 16 15 30 30 C 1.48377 * 127.17223 * 179.82156 * 14 12 2 31 31 H 1.09002 * 109.46859 * 59.99566 * 1 2 3 32 32 H 1.08991 * 109.47361 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46749 * 299.99830 * 1 2 3 34 34 H 1.09003 * 109.47116 * 300.00374 * 5 4 2 35 35 H 1.09001 * 109.47209 * 60.00039 * 5 4 2 36 36 H 1.08001 * 120.41757 * 0.02562 * 7 6 5 37 37 H 1.08002 * 119.61535 * 180.25689 * 8 7 6 38 38 H 1.08002 * 119.61548 * 179.97438 * 10 9 8 39 39 H 1.07995 * 120.41505 * 180.02562 * 11 10 9 40 40 H 1.09002 * 109.91598 * 35.15729 * 15 14 12 41 41 H 1.08999 * 109.91369 * 274.06810 * 15 14 12 42 42 H 0.97005 * 119.99777 * 266.44910 * 18 16 15 43 43 H 0.97004 * 120.00317 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.46800 * 60.00464 * 28 27 16 45 45 H 1.09000 * 109.46856 * 179.97438 * 28 27 16 46 46 H 1.09002 * 109.47265 * 300.00125 * 28 27 16 47 47 H 1.09005 * 109.46948 * 59.99904 * 29 27 16 48 48 H 1.08999 * 109.46853 * 179.97438 * 29 27 16 49 49 H 1.09001 * 109.46580 * 300.00009 * 29 27 16 50 50 H 1.09005 * 110.51886 * 100.79006 * 30 14 12 51 51 H 1.09006 * 110.83140 * 337.82723 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 0.1827 2.2940 6 6 2.7003 -0.6286 3.4613 7 6 1.8129 -1.2041 4.3579 8 6 2.3083 -1.9457 5.4135 9 7 3.6075 -2.0999 5.5786 10 6 4.4805 -1.5627 4.7490 11 6 4.0590 -0.8128 3.6674 12 6 2.0324 -0.7104 -1.2305 13 8 2.6529 -1.7467 -1.1216 14 7 1.7919 -0.1941 -2.4521 15 6 1.0595 1.0477 -2.7631 16 6 1.5725 1.5515 -4.1250 17 1 2.0429 2.5285 -4.0145 18 7 0.4719 1.6215 -5.0892 19 6 -0.3075 2.7453 -5.1583 20 1 -0.1105 3.5802 -4.5022 21 6 -1.3507 2.8114 -6.0716 22 7 -1.5912 1.7937 -6.8708 23 14 -2.4143 4.3442 -6.1653 24 1 -1.8272 5.2951 -7.1434 25 1 -3.7842 3.9703 -6.5997 26 1 -2.4769 4.9858 -4.8276 27 6 2.6146 0.5015 -4.5747 28 6 2.4998 0.2330 -6.0766 29 6 4.0308 0.9546 -4.2140 30 6 2.2119 -0.7538 -3.7605 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.9321 0.9512 2.0450 35 1 1.2539 0.6545 2.5589 36 1 0.7479 -1.0779 4.2304 37 1 1.6236 -2.4007 6.1140 38 1 5.5371 -1.7104 4.9168 39 1 4.7788 -0.3757 2.9913 40 1 1.2528 1.7954 -1.9939 41 1 -0.0096 0.8434 -2.8217 42 1 0.2951 0.8717 -5.6788 43 1 -2.3200 1.8400 -7.5093 44 1 2.6735 1.1585 -6.6254 45 1 3.2427 -0.5084 -6.3709 46 1 1.5018 -0.1422 -6.3034 47 1 4.1065 1.0856 -3.1345 48 1 4.7474 0.2005 -4.5393 49 1 4.2471 1.9004 -4.7109 50 1 1.3808 -1.2722 -4.2388 51 1 3.0633 -1.4237 -3.6402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734501861.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:47 Heat of formation + Delta-G solvation = -22.289630 kcal Electronic energy + Delta-G solvation = -30893.595165 eV Core-core repulsion = 26793.781834 eV Total energy + Delta-G solvation = -4099.813331 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.52491 -40.17056 -38.62914 -37.30711 -34.16764 -33.76756 -33.23616 -31.50640 -31.13872 -30.85545 -27.84797 -27.17130 -26.88921 -26.36755 -24.18928 -23.76941 -23.48821 -22.28941 -21.59638 -19.34879 -18.67976 -17.68406 -17.27499 -16.88660 -16.74990 -16.36905 -15.90516 -15.80049 -15.23026 -15.08989 -14.70620 -14.22655 -14.07326 -13.99960 -13.92354 -13.76057 -13.67374 -13.14949 -12.93127 -12.73833 -12.52668 -12.42980 -12.22730 -11.94909 -11.87522 -11.80090 -11.61298 -11.54367 -11.29809 -11.01693 -10.96705 -10.60546 -10.48417 -10.28719 -10.18510 -10.02551 -9.88955 -9.78814 -9.71707 -9.44290 -9.41469 -9.06018 -8.38131 -7.13797 -5.90449 -3.20703 0.82835 0.85045 2.74249 2.79948 3.34370 3.39786 3.41946 3.46351 3.83366 4.17439 4.36007 4.37608 4.46686 4.56014 4.72947 4.76828 4.81576 4.89669 4.92260 5.01730 5.03916 5.05553 5.20282 5.31514 5.40791 5.48328 5.49653 5.54209 5.57880 5.60233 5.64953 5.73401 5.85891 5.91127 5.99102 6.02396 6.05615 6.10211 6.21863 6.23648 6.32525 6.37499 6.38339 6.42543 6.56267 6.77115 6.81724 6.90956 7.57532 7.66330 7.78564 8.27365 8.33983 9.39769 9.94295 10.29012 11.31515 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015696 B = 0.002289 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.424808 B =12231.849196 C =13368.680334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.077 3.923 3 H 0.086 0.914 4 O -0.350 6.350 5 C 0.097 3.903 6 C -0.042 4.042 7 C -0.151 4.151 8 C 0.095 3.905 9 N -0.484 5.484 10 C 0.095 3.905 11 C -0.149 4.149 12 C 0.532 3.468 13 O -0.534 6.534 14 N -0.611 5.611 15 C 0.070 3.930 16 C 0.176 3.824 17 H 0.065 0.935 18 N -0.714 5.714 19 C -0.248 4.248 20 H 0.071 0.929 21 C -0.008 4.008 22 N -0.928 5.928 23 Si 0.906 3.094 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.088 4.088 28 C -0.125 4.125 29 C -0.129 4.129 30 C 0.120 3.880 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.137 0.863 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.137 0.863 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.389 0.611 43 H 0.257 0.743 44 H 0.064 0.936 45 H 0.044 0.956 46 H 0.067 0.933 47 H 0.050 0.950 48 H 0.052 0.948 49 H 0.058 0.942 50 H 0.073 0.927 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.044 -2.266 17.532 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.016 3.984 3 H 0.103 0.897 4 O -0.268 6.268 5 C 0.021 3.979 6 C -0.050 4.050 7 C -0.171 4.171 8 C -0.062 4.062 9 N -0.193 5.193 10 C -0.061 4.061 11 C -0.169 4.169 12 C 0.319 3.681 13 O -0.411 6.411 14 N -0.346 5.346 15 C -0.055 4.055 16 C 0.064 3.936 17 H 0.083 0.917 18 N -0.357 5.357 19 C -0.379 4.379 20 H 0.089 0.911 21 C -0.204 4.204 22 N -0.576 5.576 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.089 4.089 28 C -0.183 4.183 29 C -0.186 4.186 30 C -0.002 4.002 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.155 0.845 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.155 0.845 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.226 0.774 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.608 -3.383 18.389 21.022 hybrid contribution -1.256 1.471 -0.993 2.174 sum 8.351 -1.912 17.396 19.392 Atomic orbital electron populations 1.22301 0.93194 1.03979 1.03771 1.21844 0.95413 0.96091 0.85058 0.89669 1.88102 1.86674 1.33553 1.18477 1.21412 1.00183 0.91653 0.84677 1.19982 0.93688 0.96640 0.94688 1.22100 1.01067 0.98194 0.95747 1.22771 0.91978 0.95365 0.96096 1.67665 1.03381 1.19659 1.28608 1.22777 0.99709 0.93136 0.90504 1.22115 0.95899 0.99844 0.99057 1.19822 0.80025 0.85263 0.83022 1.90697 1.40921 1.23554 1.85905 1.48787 1.55204 1.25824 1.04796 1.23582 0.97456 0.84423 1.00073 1.21082 0.88710 0.95940 0.87889 0.91661 1.42636 1.33150 1.18853 1.41012 1.19218 1.08215 0.94228 1.16213 0.91095 1.24743 0.99283 0.97729 0.98681 1.69644 1.32837 1.30334 1.24758 0.86217 0.79922 0.82508 0.77634 1.21660 1.21772 1.20743 1.21914 0.95587 0.95357 0.96090 1.21597 1.01793 1.01674 0.93245 1.21704 0.94972 1.01055 1.00905 1.22581 0.99916 0.95865 0.81883 0.89787 0.91166 0.91413 0.91751 0.91635 0.84546 0.82562 0.82535 0.84538 0.92267 0.90077 0.77414 0.93336 0.91671 0.93682 0.91381 0.93135 0.92888 0.92290 0.90842 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.40 37.16 0.35 -1.64 16 2 C 0.08 0.98 2.51 -27.88 -0.07 0.91 16 3 H 0.09 0.90 7.33 -51.93 -0.38 0.52 16 4 O -0.35 -4.70 9.51 -55.09 -0.52 -5.22 16 5 C 0.10 0.93 5.92 36.00 0.21 1.14 16 6 C -0.04 -0.42 5.55 -104.32 -0.58 -0.99 16 7 C -0.15 -1.37 9.82 -39.44 -0.39 -1.75 16 8 C 0.09 0.87 11.18 -17.55 -0.20 0.67 16 9 N -0.48 -5.22 10.36 -13.25 -0.14 -5.35 16 10 C 0.10 0.90 11.18 -17.55 -0.20 0.70 16 11 C -0.15 -1.41 9.82 -39.44 -0.39 -1.80 16 12 C 0.53 8.64 7.28 -10.98 -0.08 8.56 16 13 O -0.53 -10.67 16.74 -14.30 -0.24 -10.91 16 14 N -0.61 -9.49 3.23 -169.54 -0.55 -10.04 16 15 C 0.07 1.10 5.18 -2.98 -0.02 1.08 16 16 C 0.18 3.05 3.09 -66.56 -0.21 2.84 16 17 H 0.07 1.14 7.83 -51.93 -0.41 0.73 16 18 N -0.71 -15.67 4.51 -52.10 -0.24 -15.90 16 19 C -0.25 -6.17 9.97 -15.06 -0.15 -6.32 16 20 H 0.07 1.71 7.83 -52.49 -0.41 1.29 16 21 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 22 N -0.93 -26.07 13.06 55.49 0.72 -25.35 16 23 Si 0.91 20.93 29.55 -169.99 -5.02 15.90 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 C -0.09 -1.32 0.93 -152.63 -0.14 -1.46 16 28 C -0.13 -1.94 7.82 37.16 0.29 -1.65 16 29 C -0.13 -1.69 8.50 37.16 0.32 -1.38 16 30 C 0.12 1.86 5.99 -1.98 -0.01 1.85 16 31 H 0.08 1.00 5.71 -51.93 -0.30 0.70 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.61 7.87 -51.93 -0.41 0.20 16 34 H 0.06 0.52 8.05 -51.93 -0.42 0.10 16 35 H 0.07 0.50 7.83 -51.93 -0.41 0.09 16 36 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 40 H 0.06 0.80 7.39 -51.93 -0.38 0.41 16 41 H 0.08 1.42 7.08 -51.93 -0.37 1.05 16 42 H 0.39 9.14 5.51 -40.82 -0.23 8.92 16 43 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.07 1.19 6.23 -51.93 -0.32 0.87 16 47 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 48 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.07 1.19 8.02 -51.93 -0.42 0.78 16 51 H 0.08 1.19 7.79 -51.93 -0.40 0.79 16 LS Contribution 411.71 15.07 6.20 6.20 Total: -1.00 -31.93 411.71 -9.33 -41.27 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -8.21 Total: 8.94 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.35 Total: 0.46 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.19 Total: -56.64 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.76 Total: -16.13 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.93 -9.33 -41.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734501861.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.978 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds