Wall clock time and date at job start Wed Apr 1 2020 04:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47179 * 2 1 4 4 O 1.42897 * 109.47073 * 120.00348 * 2 1 3 5 5 C 1.42895 * 114.00222 * 269.99673 * 4 2 1 6 6 C 1.50698 * 109.47465 * 179.97438 * 5 4 2 7 7 C 1.38656 * 120.79065 * 269.72017 * 6 5 4 8 8 C 1.38199 * 119.15823 * 179.75362 * 7 6 5 9 9 N 1.31870 * 120.76660 * 0.53083 * 8 7 6 10 10 C 1.31867 * 121.72475 * 359.74235 * 9 8 7 11 11 C 1.38203 * 120.76521 * 359.97438 * 10 9 8 12 12 C 1.50702 * 109.46922 * 240.00168 * 2 1 3 13 13 O 1.21282 * 120.00103 * 245.00229 * 12 2 1 14 14 N 1.34786 * 120.00009 * 65.00129 * 12 2 1 15 15 C 1.47485 * 127.03052 * 0.02562 * 14 12 2 16 16 C 1.54005 * 107.24392 * 154.61643 * 15 14 12 17 17 H 1.09001 * 110.32306 * 242.31588 * 16 15 14 18 18 N 1.46496 * 110.32767 * 120.10236 * 16 15 14 19 19 C 1.36938 * 120.00289 * 86.45241 * 18 16 15 20 20 H 1.07995 * 119.99769 * 0.02562 * 19 18 16 21 21 C 1.38810 * 119.99829 * 180.02562 * 19 18 16 22 22 N 1.31611 * 120.00272 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99737 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47037 * 89.99978 * 23 21 19 25 25 H 1.48496 * 109.47089 * 209.99789 * 23 21 19 26 26 H 1.48502 * 109.47141 * 330.00191 * 23 21 19 27 27 C 1.54616 * 105.04550 * 1.20635 * 16 15 14 28 28 C 1.52999 * 110.73839 * 140.18699 * 27 16 15 29 29 C 1.53004 * 110.74066 * 263.33330 * 27 16 15 30 30 C 1.48377 * 127.17223 * 179.82156 * 14 12 2 31 31 H 1.09002 * 109.46859 * 59.99566 * 1 2 3 32 32 H 1.08991 * 109.47361 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46749 * 299.99830 * 1 2 3 34 34 H 1.09003 * 109.47116 * 300.00374 * 5 4 2 35 35 H 1.09001 * 109.47209 * 60.00039 * 5 4 2 36 36 H 1.08001 * 120.41757 * 0.02562 * 7 6 5 37 37 H 1.08002 * 119.61535 * 180.25689 * 8 7 6 38 38 H 1.08002 * 119.61548 * 179.97438 * 10 9 8 39 39 H 1.07995 * 120.41505 * 180.02562 * 11 10 9 40 40 H 1.09002 * 109.91598 * 35.15729 * 15 14 12 41 41 H 1.08999 * 109.91369 * 274.06810 * 15 14 12 42 42 H 0.97005 * 119.99777 * 266.44910 * 18 16 15 43 43 H 0.97004 * 120.00317 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.46800 * 60.00464 * 28 27 16 45 45 H 1.09000 * 109.46856 * 179.97438 * 28 27 16 46 46 H 1.09002 * 109.47265 * 300.00125 * 28 27 16 47 47 H 1.09005 * 109.46948 * 59.99904 * 29 27 16 48 48 H 1.08999 * 109.46853 * 179.97438 * 29 27 16 49 49 H 1.09001 * 109.46580 * 300.00009 * 29 27 16 50 50 H 1.09005 * 110.51886 * 100.79006 * 30 14 12 51 51 H 1.09006 * 110.83140 * 337.82723 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 0.1827 2.2940 6 6 2.7003 -0.6286 3.4613 7 6 1.8129 -1.2041 4.3579 8 6 2.3083 -1.9457 5.4135 9 7 3.6075 -2.0999 5.5786 10 6 4.4805 -1.5627 4.7490 11 6 4.0590 -0.8128 3.6674 12 6 2.0324 -0.7104 -1.2305 13 8 2.6529 -1.7467 -1.1216 14 7 1.7919 -0.1941 -2.4521 15 6 1.0595 1.0477 -2.7631 16 6 1.5725 1.5515 -4.1250 17 1 2.0429 2.5285 -4.0145 18 7 0.4719 1.6215 -5.0892 19 6 -0.3075 2.7453 -5.1583 20 1 -0.1105 3.5802 -4.5022 21 6 -1.3507 2.8114 -6.0716 22 7 -1.5912 1.7937 -6.8708 23 14 -2.4143 4.3442 -6.1653 24 1 -1.8272 5.2951 -7.1434 25 1 -3.7842 3.9703 -6.5997 26 1 -2.4769 4.9858 -4.8276 27 6 2.6146 0.5015 -4.5747 28 6 2.4998 0.2330 -6.0766 29 6 4.0308 0.9546 -4.2140 30 6 2.2119 -0.7538 -3.7605 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.9321 0.9512 2.0450 35 1 1.2539 0.6545 2.5589 36 1 0.7479 -1.0779 4.2304 37 1 1.6236 -2.4007 6.1140 38 1 5.5371 -1.7104 4.9168 39 1 4.7788 -0.3757 2.9913 40 1 1.2528 1.7954 -1.9939 41 1 -0.0096 0.8434 -2.8217 42 1 0.2951 0.8717 -5.6788 43 1 -2.3200 1.8400 -7.5093 44 1 2.6735 1.1585 -6.6254 45 1 3.2427 -0.5084 -6.3709 46 1 1.5018 -0.1422 -6.3034 47 1 4.1065 1.0856 -3.1345 48 1 4.7474 0.2005 -4.5393 49 1 4.2471 1.9004 -4.7109 50 1 1.3808 -1.2722 -4.2388 51 1 3.0633 -1.4237 -3.6402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734501861.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:46 Heat of formation + Delta-G solvation = -40.889005 kcal Electronic energy + Delta-G solvation = -30894.401694 eV Core-core repulsion = 26793.781834 eV Total energy + Delta-G solvation = -4100.619860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.53604 -41.09717 -39.76818 -38.45390 -35.79076 -34.88345 -34.28205 -32.62492 -32.16176 -32.07130 -29.30335 -28.14263 -27.90069 -27.61141 -25.77440 -24.73554 -24.42007 -23.04166 -22.92520 -20.56068 -20.01317 -19.12195 -18.55750 -17.75293 -17.56202 -17.36526 -17.12361 -16.58939 -16.47460 -16.28731 -15.92779 -15.72299 -15.44634 -15.02968 -14.87092 -14.77143 -14.53896 -14.39382 -14.10278 -13.95395 -13.67705 -13.42497 -13.23112 -13.18266 -13.11074 -12.91783 -12.80449 -12.74861 -12.58270 -12.49701 -12.30958 -12.11172 -12.03263 -11.81462 -11.41014 -11.27511 -11.13169 -10.90918 -10.77087 -10.53955 -10.48306 -10.10044 -9.70641 -8.98570 -7.88829 -5.16819 0.11884 0.18739 1.50310 1.52773 1.53398 1.60932 1.69602 2.59387 2.63825 3.03388 3.32414 3.43625 3.57218 3.66355 3.72098 3.75615 3.77840 3.89416 3.91464 4.02036 4.08086 4.10468 4.19065 4.33150 4.37847 4.41332 4.42459 4.59479 4.62176 4.64643 4.68485 4.73794 4.77354 4.87546 4.88384 4.90352 4.97393 5.02740 5.06576 5.10079 5.14162 5.18171 5.33526 5.35248 5.43682 5.55619 5.62918 5.74072 5.97570 6.32560 6.52923 6.98665 7.07623 7.40938 8.14887 8.38007 9.34208 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015696 B = 0.002289 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.424808 B =12231.849196 C =13368.680334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.083 3.917 3 H 0.115 0.885 4 O -0.377 6.377 5 C 0.094 3.906 6 C -0.059 4.059 7 C -0.155 4.155 8 C 0.084 3.916 9 N -0.510 5.510 10 C 0.084 3.916 11 C -0.158 4.158 12 C 0.526 3.474 13 O -0.577 6.577 14 N -0.607 5.607 15 C 0.082 3.918 16 C 0.169 3.831 17 H 0.072 0.928 18 N -0.724 5.724 19 C -0.233 4.233 20 H 0.083 0.917 21 C -0.072 4.072 22 N -0.968 5.968 23 Si 0.964 3.036 24 H -0.292 1.292 25 H -0.304 1.304 26 H -0.266 1.266 27 C -0.078 4.078 28 C -0.119 4.119 29 C -0.122 4.122 30 C 0.118 3.882 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.156 0.844 37 H 0.179 0.821 38 H 0.177 0.823 39 H 0.149 0.851 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.378 0.622 43 H 0.248 0.752 44 H 0.052 0.948 45 H 0.068 0.932 46 H 0.042 0.958 47 H 0.052 0.948 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.060 0.940 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.788 -0.685 19.364 21.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.022 3.978 3 H 0.132 0.868 4 O -0.296 6.296 5 C 0.018 3.982 6 C -0.068 4.068 7 C -0.175 4.175 8 C -0.072 4.072 9 N -0.220 5.220 10 C -0.072 4.072 11 C -0.178 4.178 12 C 0.316 3.684 13 O -0.457 6.457 14 N -0.341 5.341 15 C -0.043 4.043 16 C 0.058 3.942 17 H 0.090 0.910 18 N -0.366 5.366 19 C -0.364 4.364 20 H 0.100 0.900 21 C -0.264 4.264 22 N -0.618 5.618 23 Si 0.795 3.205 24 H -0.220 1.220 25 H -0.231 1.231 26 H -0.191 1.191 27 C -0.079 4.079 28 C -0.177 4.177 29 C -0.180 4.180 30 C -0.004 4.004 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.174 0.826 37 H 0.196 0.804 38 H 0.194 0.806 39 H 0.167 0.833 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.214 0.786 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.078 0.922 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.382 -1.769 20.271 22.844 hybrid contribution -1.399 0.920 -1.494 2.244 sum 8.984 -0.849 18.777 20.833 Atomic orbital electron populations 1.22269 0.92221 1.03278 1.04914 1.21843 0.95903 0.96623 0.83407 0.86771 1.88071 1.86887 1.35272 1.19378 1.21632 1.01867 0.91393 0.83278 1.20238 0.94120 0.97198 0.95196 1.22361 1.02051 0.97677 0.95381 1.23206 0.91955 0.95367 0.96684 1.67691 1.04286 1.20541 1.29478 1.23156 1.00656 0.92966 0.90414 1.22340 0.96289 0.99897 0.99289 1.20585 0.79082 0.84833 0.83936 1.90673 1.42949 1.25530 1.86515 1.48800 1.54788 1.25666 1.04812 1.23302 0.96175 0.85003 0.99807 1.21310 0.87987 0.97103 0.87783 0.90972 1.42791 1.34054 1.17797 1.41930 1.19624 1.07262 0.94863 1.14691 0.89956 1.25442 1.01303 1.00204 0.99492 1.69799 1.33613 1.32304 1.26107 0.85272 0.77657 0.79621 0.77977 1.21991 1.23128 1.19074 1.21849 0.96336 0.94244 0.95510 1.21507 1.00999 1.01558 0.93599 1.21654 0.93436 1.01735 1.01155 1.22547 0.99508 0.96146 0.82239 0.90372 0.92842 0.88446 0.90198 0.89359 0.82644 0.80394 0.80612 0.83338 0.89128 0.91929 0.78627 0.94316 0.92873 0.91352 0.93909 0.92847 0.91632 0.91591 0.92210 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.45 9.40 71.98 0.68 -2.77 16 2 C 0.08 1.90 2.51 29.85 0.07 1.97 16 3 H 0.11 1.93 7.33 -2.39 -0.02 1.91 16 4 O -0.38 -9.33 9.51 -129.99 -1.24 -10.56 16 5 C 0.09 1.52 5.92 71.24 0.42 1.95 16 6 C -0.06 -1.07 5.55 -19.67 -0.11 -1.18 16 7 C -0.16 -2.53 9.82 22.36 0.22 -2.31 16 8 C 0.08 1.44 11.18 84.68 0.95 2.39 16 9 N -0.51 -10.57 10.36 -195.85 -2.03 -12.60 16 10 C 0.08 1.51 11.18 84.68 0.95 2.46 16 11 C -0.16 -2.78 9.82 22.36 0.22 -2.56 16 12 C 0.53 16.41 7.28 87.66 0.64 17.04 16 13 O -0.58 -22.84 16.74 15.95 0.27 -22.58 16 14 N -0.61 -18.04 3.23 -808.69 -2.61 -20.65 16 15 C 0.08 2.40 5.18 86.53 0.45 2.85 16 16 C 0.17 5.58 3.09 45.88 0.14 5.72 16 17 H 0.07 2.33 7.83 -2.39 -0.02 2.31 16 18 N -0.72 -31.59 4.51 -318.74 -1.44 -33.03 16 19 C -0.23 -11.38 9.97 84.03 0.84 -10.54 16 20 H 0.08 3.78 7.83 -2.91 -0.02 3.75 16 21 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 22 N -0.97 -55.58 13.06 21.65 0.28 -55.30 16 23 Si 0.96 43.00 29.55 68.60 2.03 45.03 16 24 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 25 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 27 C -0.08 -2.24 0.93 -50.97 -0.05 -2.29 16 28 C -0.12 -3.64 7.82 71.98 0.56 -3.08 16 29 C -0.12 -2.91 8.50 71.98 0.61 -2.30 16 30 C 0.12 3.61 5.99 86.68 0.52 4.13 16 31 H 0.08 1.69 5.71 -2.39 -0.01 1.67 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 1.40 7.87 -2.39 -0.02 1.38 16 34 H 0.08 1.03 8.05 -2.39 -0.02 1.01 16 35 H 0.09 1.01 7.83 -2.39 -0.02 0.99 16 36 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 37 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 38 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 40 H 0.09 2.10 7.39 -2.39 -0.02 2.08 16 41 H 0.06 2.11 7.08 -2.39 -0.02 2.10 16 42 H 0.38 18.17 5.51 -92.70 -0.51 17.66 16 43 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 46 H 0.04 1.53 6.23 -2.39 -0.01 1.52 16 47 H 0.05 1.25 8.09 -2.38 -0.02 1.23 16 48 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.06 1.98 8.02 -2.38 -0.02 1.96 16 51 H 0.08 2.38 7.79 -2.38 -0.02 2.37 16 Total: -1.00 -69.99 411.71 3.25 -66.74 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: 0.41 Total: 34.82 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 7.57 Total: 8.13 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -5.79 Total: -121.58 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -0.97 Total: -33.14 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -69.99 3.25 -66.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734501861.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.849 kcal (2) G-P(sol) polarization free energy of solvation -69.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds