Wall clock time and date at job start Wed Apr 1 2020 04:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46614 * 2 1 4 4 O 1.42899 * 109.47438 * 120.00276 * 2 1 3 5 5 C 1.42903 * 113.99629 * 270.00038 * 4 2 1 6 6 C 1.50701 * 109.46878 * 179.97438 * 5 4 2 7 7 C 1.38643 * 120.79007 * 269.71867 * 6 5 4 8 8 C 1.38202 * 119.16151 * 179.75662 * 7 6 5 9 9 N 1.31868 * 120.76342 * 0.53017 * 8 7 6 10 10 C 1.31872 * 121.72934 * 359.74281 * 9 8 7 11 11 C 1.38206 * 120.75773 * 359.97431 * 10 9 8 12 12 C 1.50704 * 109.46819 * 240.00548 * 2 1 3 13 13 O 1.21282 * 119.99404 * 244.99537 * 12 2 1 14 14 N 1.34773 * 120.00398 * 64.99112 * 12 2 1 15 15 C 1.47421 * 125.64811 * 359.69864 * 14 12 2 16 16 C 1.55133 * 104.72571 * 155.81054 * 15 14 12 17 17 H 1.08989 * 110.90599 * 155.27337 * 16 15 14 18 18 N 1.46494 * 111.22402 * 279.17882 * 16 15 14 19 19 C 1.36946 * 119.99938 * 267.20068 * 18 16 15 20 20 H 1.07999 * 119.99777 * 0.02562 * 19 18 16 21 21 C 1.38810 * 119.99610 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99413 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00565 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.47196 * 89.99927 * 23 21 19 25 25 H 1.48495 * 109.47032 * 209.99679 * 23 21 19 26 26 H 1.48498 * 109.46927 * 329.99816 * 23 21 19 27 27 C 1.55156 * 101.48171 * 37.29455 * 16 15 14 28 28 C 1.53003 * 110.72036 * 205.96951 * 27 16 15 29 29 C 1.53001 * 110.87363 * 82.76673 * 27 16 15 30 30 C 1.47024 * 125.64959 * 179.97438 * 14 12 2 31 31 H 1.09000 * 109.46387 * 299.99499 * 1 2 3 32 32 H 1.08994 * 109.47301 * 59.99785 * 1 2 3 33 33 H 1.08999 * 109.46614 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47382 * 59.99956 * 5 4 2 35 35 H 1.09001 * 109.46938 * 299.99942 * 5 4 2 36 36 H 1.08003 * 120.42289 * 0.02562 * 7 6 5 37 37 H 1.08002 * 119.62360 * 180.29511 * 8 7 6 38 38 H 1.07991 * 119.62083 * 180.02562 * 10 9 8 39 39 H 1.08001 * 120.41568 * 180.02562 * 11 10 9 40 40 H 1.08995 * 110.36711 * 274.74419 * 15 14 12 41 41 H 1.09008 * 110.36648 * 37.06146 * 15 14 12 42 42 H 0.97002 * 120.00127 * 87.20625 * 18 16 15 43 43 H 0.96999 * 119.99711 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.47052 * 174.97793 * 28 27 16 45 45 H 1.08992 * 109.47083 * 294.97769 * 28 27 16 46 46 H 1.09006 * 109.46878 * 54.97489 * 28 27 16 47 47 H 1.09002 * 109.46903 * 304.93926 * 29 27 16 48 48 H 1.09002 * 109.47053 * 64.93443 * 29 27 16 49 49 H 1.08994 * 109.47279 * 184.93334 * 29 27 16 50 50 H 1.08995 * 109.88101 * 300.45167 * 30 14 12 51 51 H 1.09001 * 109.87858 * 61.45796 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0065 -0.6737 1.1667 5 6 2.2002 0.1829 2.2940 6 6 2.7005 -0.6284 3.4613 7 6 1.8132 -1.2038 4.3579 8 6 2.3086 -1.9455 5.4136 9 7 3.6078 -2.0995 5.5786 10 6 4.4808 -1.5623 4.7490 11 6 4.0592 -0.8124 3.6673 12 6 2.0324 -0.7103 -1.2306 13 8 2.6530 -1.7466 -1.1216 14 7 1.7918 -0.1941 -2.4521 15 6 1.0485 1.0486 -2.7285 16 6 1.5676 1.5190 -4.1126 17 1 0.8282 2.1436 -4.6136 18 7 2.8469 2.2218 -3.9884 19 6 2.8694 3.5846 -3.8551 20 1 1.9440 4.1411 -3.8412 21 6 4.0817 4.2505 -3.7379 22 7 4.1033 5.5604 -3.6103 23 14 5.6824 3.2880 -3.7626 24 1 6.1667 3.1686 -5.1614 25 1 6.6993 3.9976 -2.9456 26 1 5.4537 1.9327 -3.2005 27 6 1.7456 0.1664 -4.8517 28 6 2.8068 0.2840 -5.9476 29 6 0.4163 -0.3138 -5.4374 30 6 2.2222 -0.7802 -3.7299 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3632 -1.0277 -0.0005 34 1 1.2539 0.6547 2.5588 35 1 2.9321 0.9513 2.0449 36 1 0.7481 -1.0778 4.2304 37 1 1.6240 -2.4010 6.1137 38 1 5.5374 -1.7106 4.9163 39 1 4.7790 -0.3753 2.9912 40 1 -0.0222 0.8490 -2.7701 41 1 1.2661 1.7981 -1.9674 42 1 3.6781 1.7219 -4.0005 43 1 4.9504 6.0257 -3.5280 44 1 2.9793 -0.6959 -6.3929 45 1 2.4611 0.9761 -6.7154 46 1 3.7360 0.6554 -5.5153 47 1 -0.3328 -0.3619 -4.6470 48 1 0.0864 0.3823 -6.2086 49 1 0.5481 -1.3038 -5.8740 50 1 3.3087 -0.8640 -3.7520 51 1 1.7720 -1.7647 -3.8565 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734501862.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:51 Heat of formation + Delta-G solvation = -23.283735 kcal Electronic energy + Delta-G solvation = -31344.882980 eV Core-core repulsion = 27245.026542 eV Total energy + Delta-G solvation = -4099.856439 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.48316 -40.22420 -38.65987 -37.29518 -34.14393 -33.76371 -33.33430 -31.42701 -31.19088 -31.11138 -28.44441 -27.08957 -26.92984 -26.48384 -24.19718 -23.68480 -23.27463 -22.19742 -21.43551 -19.37761 -19.08909 -17.71676 -17.53108 -16.82905 -16.68850 -16.31071 -15.83409 -15.77755 -15.52671 -15.06461 -14.56185 -14.48807 -14.00183 -13.94386 -13.90252 -13.69763 -13.48284 -13.38291 -12.80983 -12.77382 -12.63667 -12.52650 -12.23870 -12.21529 -12.02231 -11.79192 -11.74854 -11.63876 -11.39732 -11.30025 -11.06408 -10.67411 -10.62850 -10.33692 -10.10891 -10.03682 -9.93756 -9.71341 -9.69644 -9.39660 -9.35659 -9.12057 -8.40019 -7.42192 -5.91983 -3.28779 0.90882 0.93135 2.79159 2.83840 3.27696 3.31973 3.37146 3.52896 3.90029 4.24678 4.39950 4.46173 4.46926 4.56692 4.75565 4.83440 4.84849 4.89500 4.91411 4.94274 5.00990 5.10260 5.17229 5.18951 5.39800 5.40566 5.47485 5.49003 5.55330 5.56716 5.59093 5.73152 5.73477 5.78777 5.83949 5.93181 5.98439 6.01242 6.07086 6.09718 6.15316 6.19007 6.36508 6.44868 6.46356 6.56840 6.63314 6.90237 7.72731 7.73628 7.82528 8.26979 8.36512 9.04035 9.76901 9.95514 11.25546 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010695 B = 0.003019 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.430148 B = 9271.453052 C =10687.539178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.074 3.926 3 H 0.092 0.908 4 O -0.351 6.351 5 C 0.096 3.904 6 C -0.040 4.040 7 C -0.152 4.152 8 C 0.093 3.907 9 N -0.484 5.484 10 C 0.096 3.904 11 C -0.149 4.149 12 C 0.531 3.469 13 O -0.533 6.533 14 N -0.603 5.603 15 C 0.065 3.935 16 C 0.184 3.816 17 H 0.085 0.915 18 N -0.733 5.733 19 C -0.251 4.251 20 H 0.093 0.907 21 C 0.013 3.987 22 N -0.928 5.928 23 Si 0.876 3.124 24 H -0.281 1.281 25 H -0.290 1.290 26 H -0.277 1.277 27 C -0.092 4.092 28 C -0.128 4.128 29 C -0.131 4.131 30 C 0.122 3.878 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.136 0.864 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.138 0.862 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.364 0.636 43 H 0.261 0.739 44 H 0.048 0.952 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.061 0.939 49 H 0.054 0.946 50 H 0.063 0.937 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.795 -11.780 8.543 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.013 3.987 3 H 0.110 0.890 4 O -0.269 6.269 5 C 0.019 3.981 6 C -0.048 4.048 7 C -0.172 4.172 8 C -0.064 4.064 9 N -0.193 5.193 10 C -0.061 4.061 11 C -0.168 4.168 12 C 0.318 3.682 13 O -0.410 6.410 14 N -0.338 5.338 15 C -0.061 4.061 16 C 0.072 3.928 17 H 0.102 0.898 18 N -0.374 5.374 19 C -0.380 4.380 20 H 0.111 0.889 21 C -0.184 4.184 22 N -0.575 5.575 23 Si 0.706 3.294 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.204 1.204 27 C -0.094 4.094 28 C -0.185 4.185 29 C -0.188 4.188 30 C 0.000 4.000 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.154 0.846 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.156 0.844 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.198 0.802 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.082 0.918 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.128 -12.772 9.410 17.825 hybrid contribution 0.920 0.297 -0.650 1.165 sum -7.209 -12.475 8.760 16.862 Atomic orbital electron populations 1.22279 0.93491 1.03566 1.03575 1.21854 0.95158 0.96660 0.84993 0.89035 1.88076 1.86716 1.33582 1.18514 1.21439 1.00348 0.91714 0.84552 1.19984 0.93677 0.96496 0.94690 1.22076 1.00974 0.98321 0.95818 1.22753 0.91995 0.95503 0.96102 1.67660 1.03363 1.19743 1.28575 1.22777 0.99709 0.93137 0.90469 1.22161 0.96010 0.99641 0.99034 1.19865 0.80045 0.85149 0.83172 1.90692 1.40588 1.23698 1.85981 1.48262 1.55115 1.25628 1.04754 1.23557 0.94629 0.85380 1.02542 1.21355 0.89880 0.90595 0.90954 0.89764 1.42740 1.01815 1.04776 1.88113 1.19044 0.94795 0.80878 1.43313 0.88907 1.24634 0.97080 0.95218 1.01483 1.69688 1.25550 1.06190 1.56040 0.86691 0.85139 0.79551 0.78013 1.20788 1.21587 1.20356 1.21969 0.96460 0.96233 0.94741 1.21652 0.98458 1.00805 0.97623 1.21746 0.95605 1.00848 1.00637 1.21996 0.99702 0.96195 0.82150 0.91335 0.90175 0.91366 0.91609 0.91450 0.84615 0.82618 0.82516 0.84442 0.91832 0.89957 0.80172 0.92890 0.93286 0.91698 0.92103 0.92582 0.91988 0.92664 0.91822 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 9.39 37.16 0.35 -1.49 16 2 C 0.07 1.04 2.48 -27.88 -0.07 0.97 16 3 H 0.09 1.23 7.27 -51.93 -0.38 0.85 16 4 O -0.35 -5.19 9.51 -55.09 -0.52 -5.71 16 5 C 0.10 1.09 5.92 36.01 0.21 1.30 16 6 C -0.04 -0.46 5.55 -104.32 -0.58 -1.04 16 7 C -0.15 -1.52 9.82 -39.44 -0.39 -1.90 16 8 C 0.09 0.94 11.18 -17.55 -0.20 0.74 16 9 N -0.48 -5.72 10.36 -13.25 -0.14 -5.86 16 10 C 0.10 1.04 11.18 -17.55 -0.20 0.84 16 11 C -0.15 -1.67 9.82 -39.44 -0.39 -2.06 16 12 C 0.53 9.17 7.24 -10.98 -0.08 9.09 16 13 O -0.53 -11.22 16.83 -14.31 -0.24 -11.46 16 14 N -0.60 -9.54 3.32 -170.38 -0.57 -10.11 16 15 C 0.06 0.94 4.73 -2.41 -0.01 0.93 16 16 C 0.18 3.00 2.96 -65.66 -0.19 2.81 16 17 H 0.08 1.36 7.99 -51.94 -0.42 0.94 16 18 N -0.73 -15.42 4.38 -51.24 -0.22 -15.64 16 19 C -0.25 -6.37 10.44 -15.06 -0.16 -6.53 16 20 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 21 C 0.01 0.34 5.50 -17.43 -0.10 0.25 16 22 N -0.93 -27.50 13.97 55.49 0.78 -26.73 16 23 Si 0.88 21.26 27.74 -169.99 -4.71 16.55 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 27 C -0.09 -1.27 0.80 -152.67 -0.12 -1.39 16 28 C -0.13 -1.80 8.15 37.16 0.30 -1.50 16 29 C -0.13 -1.42 8.44 37.16 0.31 -1.10 16 30 C 0.12 1.85 6.03 -3.06 -0.02 1.84 16 31 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 32 H 0.08 0.80 5.55 -51.93 -0.29 0.51 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.59 7.83 -51.93 -0.41 0.18 16 35 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 36 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.06 0.75 6.74 -51.93 -0.35 0.40 16 41 H 0.08 1.29 7.33 -51.92 -0.38 0.91 16 42 H 0.36 7.94 4.18 -40.82 -0.17 7.77 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.06 1.00 6.34 -51.93 -0.33 0.67 16 47 H 0.06 0.57 7.44 -51.93 -0.39 0.19 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.06 1.07 7.82 -51.93 -0.41 0.67 16 51 H 0.06 0.90 7.85 -51.93 -0.41 0.50 16 LS Contribution 408.05 15.07 6.15 6.15 Total: -1.00 -33.76 408.05 -8.94 -42.69 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -8.14 Total: 8.36 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.31 Total: 1.75 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.15 Total: -58.33 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.76 Total: -17.17 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.71 Total: 16.55 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.76 -8.94 -42.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734501862.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.410 kcal (2) G-P(sol) polarization free energy of solvation -33.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds