Wall clock time and date at job start Wed Apr 1 2020 04:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46614 * 2 1 4 4 O 1.42899 * 109.47438 * 120.00276 * 2 1 3 5 5 C 1.42903 * 113.99629 * 270.00038 * 4 2 1 6 6 C 1.50701 * 109.46878 * 179.97438 * 5 4 2 7 7 C 1.38643 * 120.79007 * 269.71867 * 6 5 4 8 8 C 1.38202 * 119.16151 * 179.75662 * 7 6 5 9 9 N 1.31868 * 120.76342 * 0.53017 * 8 7 6 10 10 C 1.31872 * 121.72934 * 359.74281 * 9 8 7 11 11 C 1.38206 * 120.75773 * 359.97431 * 10 9 8 12 12 C 1.50704 * 109.46819 * 240.00548 * 2 1 3 13 13 O 1.21282 * 119.99404 * 244.99537 * 12 2 1 14 14 N 1.34773 * 120.00398 * 64.99112 * 12 2 1 15 15 C 1.47421 * 125.64811 * 359.69864 * 14 12 2 16 16 C 1.55133 * 104.72571 * 155.81054 * 15 14 12 17 17 H 1.08989 * 110.90599 * 155.27337 * 16 15 14 18 18 N 1.46494 * 111.22402 * 279.17882 * 16 15 14 19 19 C 1.36946 * 119.99938 * 267.20068 * 18 16 15 20 20 H 1.07999 * 119.99777 * 0.02562 * 19 18 16 21 21 C 1.38810 * 119.99610 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99413 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00565 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.47196 * 89.99927 * 23 21 19 25 25 H 1.48495 * 109.47032 * 209.99679 * 23 21 19 26 26 H 1.48498 * 109.46927 * 329.99816 * 23 21 19 27 27 C 1.55156 * 101.48171 * 37.29455 * 16 15 14 28 28 C 1.53003 * 110.72036 * 205.96951 * 27 16 15 29 29 C 1.53001 * 110.87363 * 82.76673 * 27 16 15 30 30 C 1.47024 * 125.64959 * 179.97438 * 14 12 2 31 31 H 1.09000 * 109.46387 * 299.99499 * 1 2 3 32 32 H 1.08994 * 109.47301 * 59.99785 * 1 2 3 33 33 H 1.08999 * 109.46614 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47382 * 59.99956 * 5 4 2 35 35 H 1.09001 * 109.46938 * 299.99942 * 5 4 2 36 36 H 1.08003 * 120.42289 * 0.02562 * 7 6 5 37 37 H 1.08002 * 119.62360 * 180.29511 * 8 7 6 38 38 H 1.07991 * 119.62083 * 180.02562 * 10 9 8 39 39 H 1.08001 * 120.41568 * 180.02562 * 11 10 9 40 40 H 1.08995 * 110.36711 * 274.74419 * 15 14 12 41 41 H 1.09008 * 110.36648 * 37.06146 * 15 14 12 42 42 H 0.97002 * 120.00127 * 87.20625 * 18 16 15 43 43 H 0.96999 * 119.99711 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.47052 * 174.97793 * 28 27 16 45 45 H 1.08992 * 109.47083 * 294.97769 * 28 27 16 46 46 H 1.09006 * 109.46878 * 54.97489 * 28 27 16 47 47 H 1.09002 * 109.46903 * 304.93926 * 29 27 16 48 48 H 1.09002 * 109.47053 * 64.93443 * 29 27 16 49 49 H 1.08994 * 109.47279 * 184.93334 * 29 27 16 50 50 H 1.08995 * 109.88101 * 300.45167 * 30 14 12 51 51 H 1.09001 * 109.87858 * 61.45796 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0065 -0.6737 1.1667 5 6 2.2002 0.1829 2.2940 6 6 2.7005 -0.6284 3.4613 7 6 1.8132 -1.2038 4.3579 8 6 2.3086 -1.9455 5.4136 9 7 3.6078 -2.0995 5.5786 10 6 4.4808 -1.5623 4.7490 11 6 4.0592 -0.8124 3.6673 12 6 2.0324 -0.7103 -1.2306 13 8 2.6530 -1.7466 -1.1216 14 7 1.7918 -0.1941 -2.4521 15 6 1.0485 1.0486 -2.7285 16 6 1.5676 1.5190 -4.1126 17 1 0.8282 2.1436 -4.6136 18 7 2.8469 2.2218 -3.9884 19 6 2.8694 3.5846 -3.8551 20 1 1.9440 4.1411 -3.8412 21 6 4.0817 4.2505 -3.7379 22 7 4.1033 5.5604 -3.6103 23 14 5.6824 3.2880 -3.7626 24 1 6.1667 3.1686 -5.1614 25 1 6.6993 3.9976 -2.9456 26 1 5.4537 1.9327 -3.2005 27 6 1.7456 0.1664 -4.8517 28 6 2.8068 0.2840 -5.9476 29 6 0.4163 -0.3138 -5.4374 30 6 2.2222 -0.7802 -3.7299 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3632 -1.0277 -0.0005 34 1 1.2539 0.6547 2.5588 35 1 2.9321 0.9513 2.0449 36 1 0.7481 -1.0778 4.2304 37 1 1.6240 -2.4010 6.1137 38 1 5.5374 -1.7106 4.9163 39 1 4.7790 -0.3753 2.9912 40 1 -0.0222 0.8490 -2.7701 41 1 1.2661 1.7981 -1.9674 42 1 3.6781 1.7219 -4.0005 43 1 4.9504 6.0257 -3.5280 44 1 2.9793 -0.6959 -6.3929 45 1 2.4611 0.9761 -6.7154 46 1 3.7360 0.6554 -5.5153 47 1 -0.3328 -0.3619 -4.6470 48 1 0.0864 0.3823 -6.2086 49 1 0.5481 -1.3038 -5.8740 50 1 3.3087 -0.8640 -3.7520 51 1 1.7720 -1.7647 -3.8565 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734501862.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:50 Heat of formation + Delta-G solvation = -44.427214 kcal Electronic energy + Delta-G solvation = -31345.799830 eV Core-core repulsion = 27245.026542 eV Total energy + Delta-G solvation = -4100.773289 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.62166 -41.14395 -39.82552 -38.49879 -35.83245 -34.96290 -34.33479 -33.03008 -32.20029 -32.10432 -29.81468 -28.04418 -27.94914 -27.63085 -25.67170 -24.60716 -24.44734 -23.03249 -22.85268 -20.65901 -20.43575 -19.39928 -18.60807 -17.83001 -17.60270 -17.36690 -17.08796 -16.85406 -16.54545 -16.36059 -16.03243 -15.87705 -15.15383 -15.00983 -14.84541 -14.74460 -14.60139 -14.50152 -14.34364 -13.94764 -13.71857 -13.65086 -13.50826 -13.26580 -13.15267 -12.97195 -12.91449 -12.80980 -12.67148 -12.52708 -12.32272 -12.28522 -11.94109 -11.83942 -11.58397 -11.34141 -11.18191 -10.98967 -10.81085 -10.56816 -10.52412 -10.13844 -9.78138 -9.23425 -8.02910 -5.33700 0.07667 0.14808 1.32233 1.34781 1.39243 1.48692 1.70911 2.44163 2.60475 2.99831 3.26801 3.28892 3.50753 3.53598 3.62598 3.69350 3.71805 3.78205 3.88981 3.96516 4.02642 4.06018 4.14585 4.26592 4.33055 4.35871 4.41557 4.53724 4.62617 4.64383 4.68477 4.73775 4.78112 4.83547 4.85751 4.88311 4.93403 4.96980 5.05435 5.10395 5.16132 5.27090 5.29048 5.30074 5.40578 5.52682 5.70085 5.80457 5.92388 6.22333 6.45890 6.94502 7.06145 7.07299 7.84213 8.00873 9.18118 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010695 B = 0.003019 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.430148 B = 9271.453052 C =10687.539178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.076 3.924 3 H 0.094 0.906 4 O -0.377 6.377 5 C 0.094 3.906 6 C -0.058 4.058 7 C -0.151 4.151 8 C 0.088 3.912 9 N -0.507 5.507 10 C 0.086 3.914 11 C -0.166 4.166 12 C 0.520 3.480 13 O -0.581 6.581 14 N -0.602 5.602 15 C 0.073 3.927 16 C 0.170 3.830 17 H 0.093 0.907 18 N -0.739 5.739 19 C -0.214 4.214 20 H 0.076 0.924 21 C -0.051 4.051 22 N -0.977 5.977 23 Si 0.931 3.069 24 H -0.279 1.279 25 H -0.300 1.300 26 H -0.272 1.272 27 C -0.078 4.078 28 C -0.128 4.128 29 C -0.125 4.125 30 C 0.118 3.882 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.162 0.838 37 H 0.185 0.815 38 H 0.175 0.825 39 H 0.138 0.862 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.360 0.640 43 H 0.255 0.745 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.032 0.968 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.069 0.931 50 H 0.040 0.960 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.245 -13.164 8.564 19.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.015 3.985 3 H 0.112 0.888 4 O -0.295 6.295 5 C 0.018 3.982 6 C -0.066 4.066 7 C -0.170 4.170 8 C -0.069 4.069 9 N -0.217 5.217 10 C -0.070 4.070 11 C -0.185 4.185 12 C 0.309 3.691 13 O -0.461 6.461 14 N -0.335 5.335 15 C -0.052 4.052 16 C 0.060 3.940 17 H 0.111 0.889 18 N -0.380 5.380 19 C -0.345 4.345 20 H 0.094 0.906 21 C -0.243 4.243 22 N -0.628 5.628 23 Si 0.761 3.239 24 H -0.205 1.205 25 H -0.228 1.228 26 H -0.197 1.197 27 C -0.080 4.080 28 C -0.186 4.186 29 C -0.182 4.182 30 C -0.004 4.004 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.179 0.821 37 H 0.202 0.798 38 H 0.192 0.808 39 H 0.156 0.844 40 H 0.123 0.877 41 H 0.090 0.910 42 H 0.194 0.806 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.051 0.949 47 H 0.085 0.915 48 H 0.090 0.910 49 H 0.088 0.912 50 H 0.058 0.942 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.627 -14.192 9.410 20.072 hybrid contribution 1.589 0.665 -0.673 1.849 sum -9.037 -13.528 8.738 18.467 Atomic orbital electron populations 1.22251 0.90613 1.03823 1.05297 1.21923 0.97202 0.95800 0.83526 0.88808 1.88040 1.87117 1.35021 1.19367 1.21599 1.01714 0.91313 0.83562 1.20199 0.94049 0.97171 0.95220 1.22369 1.02101 0.97446 0.95122 1.23288 0.91896 0.95147 0.96563 1.67704 1.04358 1.20450 1.29163 1.23090 1.00683 0.92930 0.90275 1.22318 0.96461 1.00255 0.99503 1.20589 0.79310 0.84805 0.84363 1.90660 1.42771 1.25917 1.86715 1.48367 1.54695 1.25708 1.04745 1.23519 0.96562 0.84548 1.00570 1.21694 0.87921 0.91750 0.92624 0.88911 1.42789 1.03720 1.03309 1.88185 1.19072 0.93624 0.82647 1.39181 0.90618 1.25194 0.99876 0.95814 1.03440 1.69820 1.25703 1.07754 1.59473 0.85785 0.81930 0.78388 0.77786 1.20487 1.22761 1.19737 1.21924 0.98163 0.93970 0.93931 1.21657 0.97266 1.02031 0.97664 1.21727 0.93579 1.01780 1.01156 1.22088 0.98525 0.97327 0.82506 0.88855 0.89171 0.91776 0.88824 0.91778 0.82061 0.79788 0.80772 0.84386 0.87747 0.90974 0.80600 0.93539 0.91021 0.91553 0.94883 0.91458 0.91015 0.91163 0.94175 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.39 71.98 0.68 -2.31 16 2 C 0.08 2.02 2.48 29.85 0.07 2.09 16 3 H 0.09 2.40 7.27 -2.39 -0.02 2.38 16 4 O -0.38 -10.82 9.51 -129.99 -1.24 -12.05 16 5 C 0.09 2.02 5.92 71.24 0.42 2.44 16 6 C -0.06 -1.28 5.55 -19.67 -0.11 -1.39 16 7 C -0.15 -2.73 9.82 22.36 0.22 -2.52 16 8 C 0.09 1.62 11.18 84.68 0.95 2.57 16 9 N -0.51 -11.60 10.36 -195.85 -2.03 -13.63 16 10 C 0.09 1.86 11.18 84.68 0.95 2.81 16 11 C -0.17 -3.75 9.82 22.36 0.22 -3.53 16 12 C 0.52 17.59 7.24 87.66 0.63 18.22 16 13 O -0.58 -24.62 16.83 15.95 0.27 -24.35 16 14 N -0.60 -18.05 3.32 -811.35 -2.70 -20.75 16 15 C 0.07 1.91 4.73 86.93 0.41 2.32 16 16 C 0.17 5.16 2.96 46.46 0.14 5.30 16 17 H 0.09 2.72 7.99 -2.39 -0.02 2.70 16 18 N -0.74 -30.40 4.38 -316.03 -1.38 -31.78 16 19 C -0.21 -10.86 10.44 84.03 0.88 -9.98 16 20 H 0.08 4.08 8.06 -2.91 -0.02 4.06 16 21 C -0.05 -2.84 5.50 84.86 0.47 -2.37 16 22 N -0.98 -59.24 13.97 21.65 0.30 -58.94 16 23 Si 0.93 44.86 27.74 68.60 1.90 46.76 16 24 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 25 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 26 H -0.27 -12.58 6.52 99.48 0.65 -11.94 16 27 C -0.08 -1.95 0.80 -50.99 -0.04 -2.00 16 28 C -0.13 -3.38 8.15 71.98 0.59 -2.80 16 29 C -0.12 -2.20 8.44 71.98 0.61 -1.59 16 30 C 0.12 3.40 6.03 86.73 0.52 3.92 16 31 H 0.09 1.26 7.87 -2.39 -0.02 1.25 16 32 H 0.09 1.44 5.55 -2.39 -0.01 1.43 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.44 7.83 -2.39 -0.02 1.42 16 35 H 0.06 1.38 8.05 -2.39 -0.02 1.36 16 36 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 37 H 0.19 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.18 2.86 8.06 -2.92 -0.02 2.83 16 39 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 40 H 0.10 1.98 6.74 -2.39 -0.02 1.96 16 41 H 0.07 2.10 7.33 -2.38 -0.02 2.08 16 42 H 0.36 15.51 4.18 -92.71 -0.39 15.13 16 43 H 0.26 15.04 8.31 -92.71 -0.77 14.26 16 44 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.03 1.05 6.34 -2.38 -0.02 1.03 16 47 H 0.07 1.06 7.44 -2.39 -0.02 1.04 16 48 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.04 1.34 7.82 -2.39 -0.02 1.32 16 51 H 0.08 2.00 7.85 -2.39 -0.02 1.99 16 Total: -1.00 -75.41 408.05 3.21 -72.20 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.48 Total: 31.35 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 7.60 Total: 11.19 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -5.81 Total: -125.10 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -0.97 Total: -36.41 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.90 Total: 46.76 kcal Total: -75.41 3.21 -72.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734501862.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.773 kcal (2) G-P(sol) polarization free energy of solvation -75.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds