Wall clock time and date at job start Wed Apr 1 2020 04:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47436 * 2 1 4 4 O 1.42901 * 109.47037 * 119.99816 * 2 1 3 5 5 C 1.42901 * 113.99770 * 270.00113 * 4 2 1 6 6 C 1.50703 * 109.46886 * 179.97438 * 5 4 2 7 7 C 1.38651 * 120.79131 * 269.71675 * 6 5 4 8 8 C 1.38202 * 119.16461 * 179.75990 * 7 6 5 9 9 N 1.31875 * 120.76164 * 0.52607 * 8 7 6 10 10 C 1.31869 * 121.72620 * 359.74921 * 9 8 7 11 11 C 1.38200 * 120.76435 * 359.97360 * 10 9 8 12 12 C 1.50701 * 109.47104 * 239.99513 * 2 1 3 13 13 O 1.21285 * 120.00192 * 245.00010 * 12 2 1 14 14 N 1.34774 * 119.99967 * 65.00409 * 12 2 1 15 15 C 1.46925 * 120.62914 * 0.02562 * 14 12 2 16 16 C 1.53192 * 108.77449 * 126.37373 * 15 14 12 17 17 C 1.53038 * 109.31728 * 54.63281 * 16 15 14 18 18 C 1.53044 * 109.53427 * 298.63266 * 17 16 15 19 19 H 1.08990 * 109.52704 * 301.39592 * 18 17 16 20 20 C 1.53004 * 109.49415 * 181.31520 * 18 17 16 21 21 N 1.46504 * 109.46932 * 65.16708 * 20 18 17 22 22 C 1.36934 * 119.99567 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00537 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99798 * 179.97438 * 22 21 20 25 25 N 1.31624 * 120.00134 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00229 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47228 * 179.97438 * 26 24 22 28 28 H 1.48501 * 109.46793 * 299.99987 * 26 24 22 29 29 H 1.48500 * 109.47000 * 60.00079 * 26 24 22 30 30 C 1.46926 * 120.63180 * 179.97438 * 14 12 2 31 31 H 1.08999 * 109.47395 * 300.00192 * 1 2 3 32 32 H 1.09007 * 109.46760 * 60.00506 * 1 2 3 33 33 H 1.08998 * 109.47436 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47086 * 299.99327 * 5 4 2 35 35 H 1.08997 * 109.47291 * 59.99979 * 5 4 2 36 36 H 1.08000 * 120.41388 * 0.02562 * 7 6 5 37 37 H 1.07999 * 119.62235 * 180.29523 * 8 7 6 38 38 H 1.07995 * 119.61799 * 179.97438 * 10 9 8 39 39 H 1.08005 * 120.42016 * 180.02562 * 11 10 9 40 40 H 1.09007 * 109.58369 * 246.15303 * 15 14 12 41 41 H 1.08992 * 109.58945 * 6.58076 * 15 14 12 42 42 H 1.09004 * 109.49777 * 174.58787 * 16 15 14 43 43 H 1.09002 * 109.49278 * 294.64560 * 16 15 14 44 44 H 1.08998 * 109.46226 * 178.61392 * 17 16 15 45 45 H 1.08994 * 109.46096 * 58.65429 * 17 16 15 46 46 H 1.08998 * 109.47524 * 305.16352 * 20 18 17 47 47 H 1.08997 * 109.47093 * 185.16253 * 20 18 17 48 48 H 0.97000 * 119.99825 * 359.97438 * 21 20 18 49 49 H 0.97005 * 119.99717 * 0.02562 * 25 24 22 50 50 H 1.08998 * 109.58784 * 113.84427 * 30 14 12 51 51 H 1.09004 * 109.58782 * 353.42010 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1999 0.1830 2.2941 6 6 2.7001 -0.6283 3.4614 7 6 1.8127 -1.2036 4.3581 8 6 2.3080 -1.9452 5.4139 9 7 3.6073 -2.0993 5.5790 10 6 4.4803 -1.5621 4.7494 11 6 4.0588 -0.8123 3.6677 12 6 2.0323 -0.7105 -1.2304 13 8 2.6529 -1.7468 -1.1214 14 7 1.7919 -0.1943 -2.4520 15 6 1.0421 1.0605 -2.6001 16 6 1.8703 2.0328 -3.4459 17 6 2.2412 1.3621 -4.7706 18 6 3.0896 0.1186 -4.4947 19 1 3.9870 0.4043 -3.9461 20 6 3.4873 -0.5327 -5.8208 21 7 4.3650 0.3733 -6.5659 22 6 4.8514 0.0017 -7.7908 23 1 4.5883 -0.9593 -8.2075 24 6 5.6826 0.8603 -8.4971 25 7 6.0028 2.0318 -7.9895 26 14 6.3467 0.3532 -10.1678 27 1 7.2029 1.4385 -10.7103 28 1 7.1503 -0.8874 -10.0252 29 1 5.2145 0.1058 -11.0962 30 6 2.2756 -0.8751 -3.6608 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 2.9319 0.9513 2.0450 35 1 1.2537 0.6548 2.5588 36 1 0.7477 -1.0775 4.2305 37 1 1.6233 -2.4006 6.1140 38 1 5.5369 -1.7098 4.9172 39 1 4.7787 -0.3752 2.9915 40 1 0.0922 0.8620 -3.0966 41 1 0.8594 1.4952 -1.6174 42 1 1.2858 2.9313 -3.6442 43 1 2.7786 2.3013 -2.9066 44 1 2.8096 2.0606 -5.3846 45 1 1.3323 1.0721 -5.2977 46 1 2.5922 -0.7364 -6.4085 47 1 4.0128 -1.4670 -5.6235 48 1 4.6016 1.2363 -6.1915 49 1 5.6583 2.2950 -7.1218 50 1 1.4266 -1.2317 -4.2439 51 1 2.9069 -1.7176 -3.3779 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752806666.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:41 Heat of formation + Delta-G solvation = -31.237855 kcal Electronic energy + Delta-G solvation = -30192.447756 eV Core-core repulsion = 26092.246401 eV Total energy + Delta-G solvation = -4100.201355 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.75608 -40.42598 -38.53212 -37.38119 -35.29422 -33.94644 -33.14504 -31.87818 -31.59314 -31.43688 -29.59073 -27.35488 -26.05015 -25.39936 -23.88906 -23.78399 -22.82803 -22.41276 -21.97493 -20.17364 -19.33881 -17.96188 -17.36964 -17.13154 -16.93630 -16.70088 -16.07313 -15.91248 -15.56710 -15.08579 -14.87969 -14.51960 -14.39381 -14.24789 -14.12133 -14.02423 -13.69925 -13.50963 -13.46913 -13.24482 -12.97548 -12.82185 -12.60674 -12.39660 -12.18734 -11.98985 -11.78356 -11.66263 -11.19404 -10.87819 -10.74244 -10.56356 -10.43422 -10.34992 -10.22131 -10.15290 -9.98654 -9.87023 -9.62919 -9.52257 -9.19115 -8.88775 -8.70644 -7.00257 -6.10809 -3.10022 0.72528 0.76560 2.44665 2.52076 3.26921 3.51891 3.55595 3.63607 3.72833 4.07270 4.10829 4.25085 4.28928 4.42880 4.56636 4.61519 4.63739 4.66880 4.72577 4.80788 4.85062 4.88802 4.91464 5.05143 5.11124 5.20457 5.21452 5.23767 5.31424 5.39735 5.48204 5.54843 5.60682 5.65440 5.71904 5.74090 5.86417 5.89373 5.95705 5.96488 6.06829 6.29642 6.33073 6.36822 6.49582 6.61047 6.69355 6.78523 7.24378 7.58571 7.81010 8.03903 8.75527 9.22799 10.09160 10.24311 11.37754 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017409 B = 0.001858 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.011059 B =15066.546473 C =15933.734639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.072 3.928 3 H 0.087 0.913 4 O -0.348 6.348 5 C 0.098 3.902 6 C -0.044 4.044 7 C -0.152 4.152 8 C 0.095 3.905 9 N -0.482 5.482 10 C 0.097 3.903 11 C -0.148 4.148 12 C 0.515 3.485 13 O -0.519 6.519 14 N -0.606 5.606 15 C 0.101 3.899 16 C -0.137 4.137 17 C -0.111 4.111 18 C -0.108 4.108 19 H 0.072 0.928 20 C 0.165 3.835 21 N -0.741 5.741 22 C -0.330 4.330 23 H 0.064 0.936 24 C -0.046 4.046 25 N -0.945 5.945 26 Si 1.080 2.920 27 H -0.285 1.285 28 H -0.295 1.295 29 H -0.295 1.295 30 C 0.121 3.879 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.136 0.864 37 H 0.157 0.843 38 H 0.159 0.841 39 H 0.138 0.862 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.022 0.978 47 H 0.022 0.978 48 H 0.367 0.633 49 H 0.253 0.747 50 H 0.070 0.930 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.832 0.220 25.172 29.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.011 3.989 3 H 0.105 0.895 4 O -0.266 6.266 5 C 0.021 3.979 6 C -0.053 4.053 7 C -0.172 4.172 8 C -0.062 4.062 9 N -0.192 5.192 10 C -0.059 4.059 11 C -0.168 4.168 12 C 0.301 3.699 13 O -0.393 6.393 14 N -0.341 5.341 15 C -0.022 4.022 16 C -0.175 4.175 17 C -0.149 4.149 18 C -0.128 4.128 19 H 0.091 0.909 20 C 0.037 3.963 21 N -0.387 5.387 22 C -0.461 4.461 23 H 0.082 0.918 24 C -0.244 4.244 25 N -0.590 5.590 26 Si 0.911 3.089 27 H -0.210 1.210 28 H -0.223 1.223 29 H -0.223 1.223 30 C -0.001 4.001 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.154 0.846 37 H 0.175 0.825 38 H 0.176 0.824 39 H 0.155 0.845 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.040 0.960 47 H 0.039 0.961 48 H 0.200 0.800 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.259 -0.789 24.569 27.930 hybrid contribution -1.303 0.591 0.578 1.543 sum -14.562 -0.198 25.147 29.060 Atomic orbital electron populations 1.22427 0.93398 1.04259 1.03534 1.21900 0.95226 0.96291 0.85519 0.89494 1.88133 1.86590 1.33476 1.18412 1.21428 1.00147 0.91683 0.84596 1.19946 0.93724 0.96879 0.94702 1.22071 1.00935 0.98337 0.95831 1.22781 0.92011 0.95331 0.96075 1.67678 1.03369 1.19553 1.28579 1.22807 0.99800 0.92942 0.90398 1.22141 0.95900 0.99737 0.99054 1.20259 0.80028 0.85628 0.83975 1.90736 1.39488 1.23249 1.85858 1.48041 1.55600 1.24737 1.05729 1.21998 0.95072 0.84270 1.00864 1.21974 1.00361 0.97949 0.97207 1.21524 1.00083 0.97277 0.95988 1.21687 0.98271 0.95557 0.97236 0.90930 1.20521 0.93462 0.93073 0.89231 1.42340 1.57743 1.18337 1.20313 1.20041 1.27363 1.03088 0.95617 0.91764 1.25781 0.98357 0.95077 1.05158 1.70897 1.47765 1.20900 1.19475 0.83234 0.75993 0.74976 0.74676 1.21041 1.22262 1.22280 1.21636 0.98635 0.95740 0.84107 0.91166 0.90059 0.90882 0.91635 0.91654 0.84624 0.82541 0.82417 0.84455 0.90860 0.89833 0.90620 0.91536 0.90607 0.91851 0.96037 0.96056 0.79994 0.93540 0.91204 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 9.10 37.15 0.34 -0.86 16 2 C 0.07 0.68 2.30 -27.89 -0.06 0.62 16 3 H 0.09 0.62 7.08 -51.93 -0.37 0.25 16 4 O -0.35 -3.92 9.51 -55.09 -0.52 -4.45 16 5 C 0.10 0.75 5.92 36.01 0.21 0.96 16 6 C -0.04 -0.39 5.55 -104.31 -0.58 -0.96 16 7 C -0.15 -1.17 9.82 -39.44 -0.39 -1.56 16 8 C 0.09 0.78 11.18 -17.55 -0.20 0.58 16 9 N -0.48 -4.88 10.36 -13.26 -0.14 -5.02 16 10 C 0.10 0.87 11.18 -17.55 -0.20 0.67 16 11 C -0.15 -1.30 9.82 -39.44 -0.39 -1.69 16 12 C 0.51 6.93 7.12 -10.99 -0.08 6.85 16 13 O -0.52 -9.43 15.92 -14.31 -0.23 -9.66 16 14 N -0.61 -7.27 2.97 -172.80 -0.51 -7.79 16 15 C 0.10 0.86 4.97 -3.71 -0.02 0.85 16 16 C -0.14 -1.39 6.08 -26.61 -0.16 -1.55 16 17 C -0.11 -1.55 5.06 -26.69 -0.13 -1.68 16 18 C -0.11 -1.71 2.37 -90.52 -0.21 -1.93 16 19 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 20 C 0.17 3.34 5.65 -4.04 -0.02 3.32 16 21 N -0.74 -18.69 5.32 -59.91 -0.32 -19.01 16 22 C -0.33 -9.42 9.99 -15.06 -0.15 -9.57 16 23 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.05 -1.36 5.50 -17.43 -0.10 -1.46 16 25 N -0.94 -29.25 13.70 55.49 0.76 -28.49 16 26 Si 1.08 26.10 29.92 -169.99 -5.09 21.02 16 27 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.30 -6.80 7.11 56.52 0.40 -6.39 16 30 C 0.12 1.70 5.71 -3.73 -0.02 1.68 16 31 H 0.07 0.33 7.87 -51.93 -0.41 -0.08 16 32 H 0.08 0.43 5.41 -51.92 -0.28 0.15 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.42 8.05 -51.93 -0.42 0.01 16 35 H 0.07 0.34 7.83 -51.93 -0.41 -0.06 16 36 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 39 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.50 4.66 -51.93 -0.24 0.26 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 1.26 7.16 -51.93 -0.37 0.88 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.37 9.36 5.69 -40.82 -0.23 9.13 16 49 H 0.25 7.70 6.77 -40.82 -0.28 7.42 16 50 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.09 1.49 7.01 -51.93 -0.36 1.12 16 LS Contribution 407.21 15.07 6.14 6.14 Total: -1.00 -37.26 407.21 -10.14 -47.40 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -8.07 Total: 5.59 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.16 Total: -5.74 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -0.21 Total: -60.30 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.75 Total: -14.10 kcal Atomic # 14 Polarization: 26.10 SS G_CDS: -5.09 Total: 21.02 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.26 -10.14 -47.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752806666.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.164 kcal (2) G-P(sol) polarization free energy of solvation -37.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds