Wall clock time and date at job start Wed Apr 1 2020 04:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47436 * 2 1 4 4 O 1.42901 * 109.47037 * 119.99816 * 2 1 3 5 5 C 1.42901 * 113.99770 * 270.00113 * 4 2 1 6 6 C 1.50703 * 109.46886 * 179.97438 * 5 4 2 7 7 C 1.38651 * 120.79131 * 269.71675 * 6 5 4 8 8 C 1.38202 * 119.16461 * 179.75990 * 7 6 5 9 9 N 1.31875 * 120.76164 * 0.52607 * 8 7 6 10 10 C 1.31869 * 121.72620 * 359.74921 * 9 8 7 11 11 C 1.38200 * 120.76435 * 359.97360 * 10 9 8 12 12 C 1.50701 * 109.47104 * 239.99513 * 2 1 3 13 13 O 1.21285 * 120.00192 * 245.00010 * 12 2 1 14 14 N 1.34774 * 119.99967 * 65.00409 * 12 2 1 15 15 C 1.46925 * 120.62914 * 0.02562 * 14 12 2 16 16 C 1.53192 * 108.77449 * 126.37373 * 15 14 12 17 17 C 1.53038 * 109.31728 * 54.63281 * 16 15 14 18 18 C 1.53044 * 109.53427 * 298.63266 * 17 16 15 19 19 H 1.08990 * 109.52704 * 301.39592 * 18 17 16 20 20 C 1.53004 * 109.49415 * 181.31520 * 18 17 16 21 21 N 1.46504 * 109.46932 * 65.16708 * 20 18 17 22 22 C 1.36934 * 119.99567 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00537 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99798 * 179.97438 * 22 21 20 25 25 N 1.31624 * 120.00134 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00229 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47228 * 179.97438 * 26 24 22 28 28 H 1.48501 * 109.46793 * 299.99987 * 26 24 22 29 29 H 1.48500 * 109.47000 * 60.00079 * 26 24 22 30 30 C 1.46926 * 120.63180 * 179.97438 * 14 12 2 31 31 H 1.08999 * 109.47395 * 300.00192 * 1 2 3 32 32 H 1.09007 * 109.46760 * 60.00506 * 1 2 3 33 33 H 1.08998 * 109.47436 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47086 * 299.99327 * 5 4 2 35 35 H 1.08997 * 109.47291 * 59.99979 * 5 4 2 36 36 H 1.08000 * 120.41388 * 0.02562 * 7 6 5 37 37 H 1.07999 * 119.62235 * 180.29523 * 8 7 6 38 38 H 1.07995 * 119.61799 * 179.97438 * 10 9 8 39 39 H 1.08005 * 120.42016 * 180.02562 * 11 10 9 40 40 H 1.09007 * 109.58369 * 246.15303 * 15 14 12 41 41 H 1.08992 * 109.58945 * 6.58076 * 15 14 12 42 42 H 1.09004 * 109.49777 * 174.58787 * 16 15 14 43 43 H 1.09002 * 109.49278 * 294.64560 * 16 15 14 44 44 H 1.08998 * 109.46226 * 178.61392 * 17 16 15 45 45 H 1.08994 * 109.46096 * 58.65429 * 17 16 15 46 46 H 1.08998 * 109.47524 * 305.16352 * 20 18 17 47 47 H 1.08997 * 109.47093 * 185.16253 * 20 18 17 48 48 H 0.97000 * 119.99825 * 359.97438 * 21 20 18 49 49 H 0.97005 * 119.99717 * 0.02562 * 25 24 22 50 50 H 1.08998 * 109.58784 * 113.84427 * 30 14 12 51 51 H 1.09004 * 109.58782 * 353.42010 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1999 0.1830 2.2941 6 6 2.7001 -0.6283 3.4614 7 6 1.8127 -1.2036 4.3581 8 6 2.3080 -1.9452 5.4139 9 7 3.6073 -2.0993 5.5790 10 6 4.4803 -1.5621 4.7494 11 6 4.0588 -0.8123 3.6677 12 6 2.0323 -0.7105 -1.2304 13 8 2.6529 -1.7468 -1.1214 14 7 1.7919 -0.1943 -2.4520 15 6 1.0421 1.0605 -2.6001 16 6 1.8703 2.0328 -3.4459 17 6 2.2412 1.3621 -4.7706 18 6 3.0896 0.1186 -4.4947 19 1 3.9870 0.4043 -3.9461 20 6 3.4873 -0.5327 -5.8208 21 7 4.3650 0.3733 -6.5659 22 6 4.8514 0.0017 -7.7908 23 1 4.5883 -0.9593 -8.2075 24 6 5.6826 0.8603 -8.4971 25 7 6.0028 2.0318 -7.9895 26 14 6.3467 0.3532 -10.1678 27 1 7.2029 1.4385 -10.7103 28 1 7.1503 -0.8874 -10.0252 29 1 5.2145 0.1058 -11.0962 30 6 2.2756 -0.8751 -3.6608 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 2.9319 0.9513 2.0450 35 1 1.2537 0.6548 2.5588 36 1 0.7477 -1.0775 4.2305 37 1 1.6233 -2.4006 6.1140 38 1 5.5369 -1.7098 4.9172 39 1 4.7787 -0.3752 2.9915 40 1 0.0922 0.8620 -3.0966 41 1 0.8594 1.4952 -1.6174 42 1 1.2858 2.9313 -3.6442 43 1 2.7786 2.3013 -2.9066 44 1 2.8096 2.0606 -5.3846 45 1 1.3323 1.0721 -5.2977 46 1 2.5922 -0.7364 -6.4085 47 1 4.0128 -1.4670 -5.6235 48 1 4.6016 1.2363 -6.1915 49 1 5.6583 2.2950 -7.1218 50 1 1.4266 -1.2317 -4.2439 51 1 2.9069 -1.7176 -3.3779 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752806666.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:40 Heat of formation + Delta-G solvation = -55.635040 kcal Electronic energy + Delta-G solvation = -30193.505697 eV Core-core repulsion = 26092.246401 eV Total energy + Delta-G solvation = -4101.259296 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.64357 -41.10912 -39.44302 -38.43590 -36.93896 -34.96363 -34.29987 -33.01889 -32.45620 -32.18036 -31.11627 -27.93811 -27.11783 -26.88378 -25.12594 -24.45854 -24.24287 -23.16038 -22.99604 -21.40661 -20.30851 -19.42245 -18.71789 -17.92160 -17.62960 -17.45248 -17.06085 -16.60121 -16.48005 -16.41356 -16.17129 -15.71365 -15.58424 -15.41026 -15.22736 -14.84570 -14.74813 -14.61817 -14.38684 -14.17281 -13.93058 -13.78876 -13.62992 -13.39244 -13.02204 -12.88576 -12.79459 -12.62225 -12.51544 -12.33552 -12.16374 -11.90871 -11.85601 -11.67984 -11.50565 -11.29755 -11.04956 -10.94969 -10.78577 -10.52684 -10.49813 -10.12355 -9.75403 -9.14320 -8.43438 -5.36995 0.10251 0.16432 1.46473 1.56925 1.65938 1.67028 1.83661 2.58984 2.69353 3.01323 3.32597 3.36400 3.55114 3.62115 3.64986 3.70951 3.73809 3.81266 3.88344 3.93507 4.02331 4.08311 4.17128 4.17294 4.24589 4.32321 4.35735 4.40161 4.47056 4.57008 4.66191 4.68023 4.69101 4.73818 4.78733 4.80804 4.85089 4.86076 4.95516 5.09581 5.13251 5.19866 5.28899 5.31127 5.38110 5.41606 5.54913 5.72211 5.95859 6.33325 6.46433 6.96896 7.05098 7.06476 7.96198 8.07449 9.08466 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017409 B = 0.001858 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.011059 B =15066.546473 C =15933.734639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.076 3.924 3 H 0.118 0.882 4 O -0.382 6.382 5 C 0.096 3.904 6 C -0.060 4.060 7 C -0.151 4.151 8 C 0.084 3.916 9 N -0.511 5.511 10 C 0.082 3.918 11 C -0.162 4.162 12 C 0.505 3.495 13 O -0.580 6.580 14 N -0.602 5.602 15 C 0.098 3.902 16 C -0.130 4.130 17 C -0.108 4.108 18 C -0.093 4.093 19 H 0.050 0.950 20 C 0.163 3.837 21 N -0.752 5.752 22 C -0.338 4.338 23 H 0.065 0.935 24 C -0.103 4.103 25 N -0.972 5.972 26 Si 1.129 2.871 27 H -0.291 1.291 28 H -0.281 1.281 29 H -0.275 1.275 30 C 0.128 3.872 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.162 0.838 37 H 0.181 0.819 38 H 0.172 0.828 39 H 0.143 0.857 40 H 0.097 0.903 41 H 0.121 0.879 42 H 0.105 0.895 43 H 0.058 0.942 44 H 0.043 0.957 45 H 0.072 0.928 46 H 0.028 0.972 47 H 0.008 0.992 48 H 0.362 0.638 49 H 0.243 0.757 50 H 0.086 0.914 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.600 1.415 25.898 31.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 H 0.135 0.865 4 O -0.301 6.301 5 C 0.020 3.980 6 C -0.068 4.068 7 C -0.171 4.171 8 C -0.073 4.073 9 N -0.221 5.221 10 C -0.074 4.074 11 C -0.182 4.182 12 C 0.294 3.706 13 O -0.459 6.459 14 N -0.336 5.336 15 C -0.023 4.023 16 C -0.168 4.168 17 C -0.146 4.146 18 C -0.113 4.113 19 H 0.068 0.932 20 C 0.036 3.964 21 N -0.397 5.397 22 C -0.470 4.470 23 H 0.083 0.917 24 C -0.295 4.295 25 N -0.620 5.620 26 Si 0.953 3.047 27 H -0.217 1.217 28 H -0.207 1.207 29 H -0.201 1.201 30 C 0.005 3.995 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.180 0.820 37 H 0.198 0.802 38 H 0.189 0.811 39 H 0.161 0.839 40 H 0.115 0.885 41 H 0.139 0.861 42 H 0.123 0.877 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.091 0.909 46 H 0.046 0.954 47 H 0.026 0.974 48 H 0.194 0.806 49 H 0.054 0.946 50 H 0.104 0.896 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.080 0.417 25.321 29.998 hybrid contribution -0.453 0.174 0.383 0.618 sum -16.533 0.591 25.704 30.568 Atomic orbital electron populations 1.22438 0.90814 1.03856 1.05860 1.22026 0.96916 0.96511 0.83036 0.86477 1.88092 1.87074 1.35390 1.19585 1.21623 1.02029 0.91175 0.83139 1.20274 0.93842 0.97257 0.95453 1.22376 1.02178 0.97418 0.95103 1.23264 0.91837 0.95375 0.96815 1.67690 1.04459 1.20515 1.29452 1.23100 1.00578 0.93132 0.90573 1.22332 0.96618 1.00043 0.99234 1.21212 0.78905 0.85112 0.85382 1.90705 1.42292 1.26108 1.86770 1.48125 1.55188 1.25616 1.04654 1.22346 0.94903 0.82134 1.02923 1.21944 1.00889 0.99068 0.94850 1.21472 0.99345 0.95597 0.98145 1.21479 0.98212 0.96833 0.94763 0.93181 1.20657 0.92512 0.92105 0.91110 1.42513 1.58400 1.18844 1.19974 1.20403 1.26893 1.02961 0.96696 0.91742 1.27255 0.98952 0.94742 1.08515 1.71002 1.49255 1.22238 1.19511 0.82616 0.76070 0.74902 0.71081 1.21660 1.20686 1.20106 1.21360 0.98528 0.94514 0.85091 0.88293 0.88191 0.92704 0.90660 0.88500 0.82024 0.80222 0.81071 0.83881 0.88487 0.86118 0.87711 0.92311 0.93790 0.90925 0.95380 0.97380 0.80567 0.94637 0.89571 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 9.10 71.98 0.66 -0.93 16 2 C 0.08 1.21 2.30 29.85 0.07 1.28 16 3 H 0.12 1.14 7.08 -2.39 -0.02 1.12 16 4 O -0.38 -7.94 9.51 -129.99 -1.24 -9.17 16 5 C 0.10 1.22 5.92 71.24 0.42 1.65 16 6 C -0.06 -0.97 5.55 -19.67 -0.11 -1.08 16 7 C -0.15 -2.07 9.82 22.36 0.22 -1.85 16 8 C 0.08 1.30 11.18 84.68 0.95 2.24 16 9 N -0.51 -10.33 10.36 -195.85 -2.03 -12.36 16 10 C 0.08 1.49 11.18 84.68 0.95 2.44 16 11 C -0.16 -2.83 9.82 22.36 0.22 -2.61 16 12 C 0.51 13.11 7.12 87.66 0.62 13.73 16 13 O -0.58 -21.75 15.92 15.94 0.25 -21.50 16 14 N -0.60 -13.44 2.97 -818.99 -2.43 -15.88 16 15 C 0.10 1.28 4.97 86.36 0.43 1.71 16 16 C -0.13 -2.25 6.08 30.67 0.19 -2.07 16 17 C -0.11 -2.92 5.06 30.62 0.15 -2.76 16 18 C -0.09 -3.01 2.37 -10.73 -0.03 -3.04 16 19 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 20 C 0.16 6.78 5.65 86.38 0.49 7.27 16 21 N -0.75 -39.04 5.32 -343.44 -1.83 -40.87 16 22 C -0.34 -19.59 9.99 84.03 0.84 -18.75 16 23 H 0.06 3.66 7.83 -2.91 -0.02 3.63 16 24 C -0.10 -6.11 5.50 84.86 0.47 -5.64 16 25 N -0.97 -61.34 13.70 21.65 0.30 -61.04 16 26 Si 1.13 52.57 29.92 68.60 2.05 54.63 16 27 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 28 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 29 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 30 C 0.13 3.60 5.71 86.35 0.49 4.10 16 31 H 0.10 0.38 7.87 -2.39 -0.02 0.36 16 32 H 0.10 0.52 5.41 -2.38 -0.01 0.51 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 0.78 8.05 -2.39 -0.02 0.76 16 35 H 0.10 0.59 7.83 -2.39 -0.02 0.57 16 36 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 37 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 38 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 39 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 40 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.12 0.75 4.66 -2.39 -0.01 0.74 16 42 H 0.10 1.30 8.14 -2.38 -0.02 1.29 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.04 1.47 7.16 -2.39 -0.02 1.46 16 45 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 48 H 0.36 19.25 5.69 -92.71 -0.53 18.72 16 49 H 0.24 15.27 6.77 -92.70 -0.63 14.64 16 50 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 51 H 0.07 2.23 7.01 -2.38 -0.02 2.21 16 Total: -1.00 -85.59 407.21 2.64 -82.95 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.54 Total: 27.55 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 7.03 Total: -4.31 kcal Atomic # 7 Polarization: -124.15 SS G_CDS: -5.99 Total: -130.14 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.98 Total: -30.67 kcal Atomic # 14 Polarization: 52.57 SS G_CDS: 2.05 Total: 54.63 kcal Total: -85.59 2.64 -82.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752806666.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.314 kcal (2) G-P(sol) polarization free energy of solvation -85.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds