Wall clock time and date at job start Wed Apr 1 2020 04:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47070 * 2 1 4 4 O 1.42897 * 109.47161 * 239.99730 * 2 1 3 5 5 C 1.42897 * 113.99692 * 90.00247 * 4 2 1 6 6 C 1.50706 * 109.46808 * 179.97438 * 5 4 2 7 7 C 1.38645 * 120.78808 * 269.71142 * 6 5 4 8 8 C 1.38207 * 119.15897 * 179.75588 * 7 6 5 9 9 N 1.31869 * 120.76746 * 0.53797 * 8 7 6 10 10 C 1.31876 * 121.72113 * 359.73909 * 9 8 7 11 11 C 1.38198 * 120.76561 * 359.97438 * 10 9 8 12 12 C 1.50700 * 109.47096 * 119.99415 * 2 1 3 13 13 O 1.21286 * 119.99874 * 109.51127 * 12 2 1 14 14 N 1.34781 * 120.00477 * 289.51665 * 12 2 1 15 15 C 1.46921 * 120.62570 * 354.70961 * 14 12 2 16 16 C 1.53196 * 108.77393 * 126.36930 * 15 14 12 17 17 C 1.53046 * 109.31198 * 54.63505 * 16 15 14 18 18 C 1.53045 * 109.53818 * 298.63825 * 17 16 15 19 19 H 1.09006 * 109.51928 * 301.39736 * 18 17 16 20 20 C 1.52997 * 109.49777 * 181.31476 * 18 17 16 21 21 N 1.46497 * 109.46995 * 65.16111 * 20 18 17 22 22 C 1.36944 * 119.99711 * 180.02562 * 21 20 18 23 23 H 1.07995 * 120.00043 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99724 * 179.97438 * 22 21 20 25 25 N 1.31616 * 120.00279 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99882 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47057 * 180.02562 * 26 24 22 28 28 H 1.48493 * 109.47265 * 300.00049 * 26 24 22 29 29 H 1.48501 * 109.47067 * 60.00250 * 26 24 22 30 30 C 1.46924 * 120.63192 * 174.68811 * 14 12 2 31 31 H 1.08999 * 109.47220 * 294.41159 * 1 2 3 32 32 H 1.08994 * 109.47340 * 54.41684 * 1 2 3 33 33 H 1.09005 * 109.46495 * 174.41072 * 1 2 3 34 34 H 1.09004 * 109.47382 * 299.99617 * 5 4 2 35 35 H 1.09000 * 109.47715 * 59.99515 * 5 4 2 36 36 H 1.08002 * 120.42278 * 0.02562 * 7 6 5 37 37 H 1.08002 * 119.61692 * 180.30068 * 8 7 6 38 38 H 1.07992 * 119.61401 * 180.02562 * 10 9 8 39 39 H 1.08004 * 120.42148 * 180.02562 * 11 10 9 40 40 H 1.08997 * 109.58585 * 246.15573 * 15 14 12 41 41 H 1.08998 * 109.58992 * 6.58658 * 15 14 12 42 42 H 1.08999 * 109.50170 * 174.57895 * 16 15 14 43 43 H 1.09001 * 109.49998 * 294.65408 * 16 15 14 44 44 H 1.08992 * 109.46309 * 178.61299 * 17 16 15 45 45 H 1.09007 * 109.45616 * 58.65327 * 17 16 15 46 46 H 1.08998 * 109.47022 * 305.15843 * 20 18 17 47 47 H 1.08995 * 109.46883 * 185.15674 * 20 18 17 48 48 H 0.96997 * 120.00706 * 359.97438 * 21 20 18 49 49 H 0.97000 * 119.99950 * 359.97438 * 25 24 22 50 50 H 1.09001 * 109.58263 * 113.84213 * 30 14 12 51 51 H 1.09001 * 109.58657 * 353.42191 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2001 0.1829 -2.2940 6 6 2.7015 -0.6283 -3.4609 7 6 4.0605 -0.8065 -3.6697 8 6 4.4830 -1.5611 -4.7477 9 7 3.6109 -2.0991 -5.5777 10 6 2.3114 -1.9459 -5.4133 11 6 1.8148 -1.2093 -4.3546 12 6 2.0323 -0.7103 1.2305 13 8 2.5652 -1.7951 1.1295 14 7 1.8894 -0.1401 2.4434 15 6 1.3519 1.2212 2.5719 16 6 0.1703 1.1948 3.5465 17 6 0.6190 0.5688 4.8691 18 6 1.0759 -0.8713 4.6247 19 1 0.2574 -1.4440 4.1885 20 6 1.4933 -1.5069 5.9523 21 7 0.3249 -1.6183 6.8290 22 6 0.4565 -2.1606 8.0796 23 1 1.4215 -2.5065 8.4193 24 6 -0.6505 -2.2657 8.9105 25 7 -1.8267 -1.8447 8.4962 26 14 -0.4711 -3.0061 10.6161 27 1 -1.7906 -3.0049 11.2975 28 1 0.0245 -4.4011 10.5006 29 1 0.4951 -2.2013 11.4059 30 6 2.2676 -0.8683 3.6622 31 1 -0.3633 0.4247 0.9358 32 1 -0.3634 0.5979 -0.8357 33 1 -0.3632 -1.0229 -0.1001 34 1 1.2538 0.6546 -2.5588 35 1 2.9319 0.9514 -2.0450 36 1 4.7798 -0.3649 -2.9959 37 1 5.5398 -1.7087 -4.9145 38 1 1.6274 -2.4020 -6.1135 39 1 0.7495 -1.0878 -4.2250 40 1 2.1267 1.8853 2.9548 41 1 1.0139 1.5741 1.5975 42 1 -0.1768 2.2125 3.7252 43 1 -0.6400 0.6035 3.1201 44 1 -0.2133 0.5712 5.5728 45 1 1.4456 1.1468 5.2824 46 1 2.2490 -0.8845 6.4314 47 1 1.9041 -2.4992 5.7667 48 1 -0.5418 -1.3074 6.5240 49 1 -1.9199 -1.4606 7.6104 50 1 3.1171 -0.3745 4.1340 51 1 2.5340 -1.8941 3.4072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752806667.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:45 Heat of formation + Delta-G solvation = -33.344451 kcal Electronic energy + Delta-G solvation = -30185.962135 eV Core-core repulsion = 26085.669431 eV Total energy + Delta-G solvation = -4100.292704 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.75891 -40.43611 -38.53199 -37.39193 -35.27548 -33.93249 -33.10963 -31.91471 -31.61316 -31.40935 -29.62022 -27.35284 -25.99224 -25.45041 -23.90003 -23.77504 -22.77250 -22.40999 -22.07503 -20.24339 -19.13947 -18.01426 -17.37966 -17.15441 -16.94932 -16.74442 -16.03109 -15.82466 -15.69550 -15.08112 -14.78046 -14.60770 -14.50766 -14.23472 -14.11366 -14.04972 -13.72062 -13.58589 -13.32743 -13.16517 -12.93460 -12.81184 -12.63328 -12.33696 -12.14783 -11.98140 -11.89769 -11.66144 -11.19293 -10.90212 -10.74171 -10.57832 -10.43451 -10.35844 -10.22572 -10.17232 -9.98644 -9.88943 -9.62711 -9.54257 -9.19044 -8.88734 -8.70586 -7.00212 -6.10733 -3.09983 0.70763 0.74421 2.42476 2.53001 3.25899 3.51959 3.55682 3.62508 3.72892 4.06475 4.10230 4.22945 4.28022 4.42519 4.59259 4.60690 4.62120 4.67177 4.71084 4.82286 4.83273 4.88981 4.89559 5.04991 5.18137 5.20003 5.20676 5.26067 5.31367 5.37460 5.48330 5.52880 5.60593 5.67170 5.72520 5.79189 5.86206 5.87198 5.95907 5.96597 6.07351 6.27560 6.33064 6.36709 6.49439 6.60958 6.69286 6.78401 7.24357 7.56633 7.81170 8.03427 8.75627 9.22893 10.09239 10.24303 11.37844 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.001748 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.683178 B =16014.163181 C =16377.330010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.073 3.927 3 H 0.085 0.915 4 O -0.348 6.348 5 C 0.098 3.902 6 C -0.044 4.044 7 C -0.150 4.150 8 C 0.097 3.903 9 N -0.482 5.482 10 C 0.096 3.904 11 C -0.151 4.151 12 C 0.515 3.485 13 O -0.518 6.518 14 N -0.607 5.607 15 C 0.102 3.898 16 C -0.136 4.136 17 C -0.111 4.111 18 C -0.108 4.108 19 H 0.073 0.927 20 C 0.165 3.835 21 N -0.741 5.741 22 C -0.330 4.330 23 H 0.064 0.936 24 C -0.046 4.046 25 N -0.944 5.944 26 Si 1.080 2.920 27 H -0.285 1.285 28 H -0.295 1.295 29 H -0.295 1.295 30 C 0.122 3.878 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.137 0.863 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.137 0.863 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.022 0.978 47 H 0.022 0.978 48 H 0.367 0.633 49 H 0.254 0.746 50 H 0.069 0.931 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.744 11.416 -26.654 30.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.012 3.988 3 H 0.103 0.897 4 O -0.267 6.267 5 C 0.021 3.979 6 C -0.052 4.052 7 C -0.170 4.170 8 C -0.060 4.060 9 N -0.192 5.192 10 C -0.061 4.061 11 C -0.171 4.171 12 C 0.301 3.699 13 O -0.393 6.393 14 N -0.342 5.342 15 C -0.021 4.021 16 C -0.175 4.175 17 C -0.149 4.149 18 C -0.128 4.128 19 H 0.091 0.909 20 C 0.037 3.963 21 N -0.387 5.387 22 C -0.461 4.461 23 H 0.082 0.918 24 C -0.243 4.243 25 N -0.590 5.590 26 Si 0.911 3.089 27 H -0.210 1.210 28 H -0.223 1.223 29 H -0.223 1.223 30 C -0.001 4.001 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.154 0.846 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.155 0.845 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.040 0.960 47 H 0.039 0.961 48 H 0.200 0.800 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.786 9.647 -25.950 28.759 hybrid contribution 0.191 1.334 -0.672 1.506 sum 7.977 10.981 -26.622 29.882 Atomic orbital electron populations 1.22340 0.93121 1.04391 1.03503 1.21927 0.95433 0.96053 0.85431 0.89720 1.88145 1.86572 1.33497 1.18441 1.21424 1.00133 0.91640 0.84654 1.19949 0.93711 0.96870 0.94716 1.22110 0.95832 0.99916 0.99100 1.22797 0.99777 0.92977 0.90465 1.67681 1.03410 1.19526 1.28563 1.22793 0.91979 0.95268 0.96064 1.22092 1.01042 0.98192 0.95754 1.20265 0.79358 0.86214 0.84023 1.90733 1.41942 1.20953 1.85668 1.48052 1.64111 1.16196 1.05832 1.21907 0.96748 0.82998 1.00468 1.21976 0.97321 1.01734 0.96420 1.21523 1.02031 0.95123 0.96175 1.21699 0.97729 0.96925 0.96406 0.90897 1.20517 0.90974 0.96788 0.88006 1.42338 1.05796 1.75627 1.14965 1.20043 0.96904 1.36955 0.92240 0.91769 1.25775 0.92256 1.01525 1.04787 1.70891 1.23545 1.44154 1.20431 0.83235 0.75318 0.75508 0.74827 1.21039 1.22273 1.22277 1.21641 0.96884 0.98214 0.83323 0.90188 0.91177 0.90664 0.91611 0.91754 0.84560 0.82473 0.82492 0.84544 0.90956 0.90046 0.90618 0.91420 0.90583 0.91860 0.96046 0.96063 0.79991 0.93533 0.91231 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 9.11 37.16 0.34 -1.04 16 2 C 0.07 0.69 2.28 -27.88 -0.06 0.63 16 3 H 0.09 0.55 6.77 -51.93 -0.35 0.20 16 4 O -0.35 -3.90 9.53 -54.92 -0.52 -4.42 16 5 C 0.10 0.72 5.92 36.01 0.21 0.93 16 6 C -0.04 -0.37 5.55 -104.32 -0.58 -0.95 16 7 C -0.15 -1.22 9.82 -39.44 -0.39 -1.60 16 8 C 0.10 0.81 11.18 -17.55 -0.20 0.62 16 9 N -0.48 -4.77 10.36 -13.25 -0.14 -4.90 16 10 C 0.10 0.78 11.18 -17.55 -0.20 0.59 16 11 C -0.15 -1.17 9.82 -39.44 -0.39 -1.55 16 12 C 0.52 6.94 7.03 -10.98 -0.08 6.86 16 13 O -0.52 -9.41 15.97 -14.14 -0.23 -9.64 16 14 N -0.61 -7.29 2.97 -172.77 -0.51 -7.80 16 15 C 0.10 0.87 5.50 -3.71 -0.02 0.85 16 16 C -0.14 -1.36 5.96 -26.61 -0.16 -1.52 16 17 C -0.11 -1.54 5.06 -26.68 -0.13 -1.67 16 18 C -0.11 -1.70 2.37 -90.50 -0.21 -1.92 16 19 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 20 C 0.17 3.33 5.65 -4.04 -0.02 3.31 16 21 N -0.74 -18.64 5.32 -59.91 -0.32 -18.96 16 22 C -0.33 -9.42 9.99 -15.06 -0.15 -9.57 16 23 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.05 -1.35 5.50 -17.43 -0.10 -1.45 16 25 N -0.94 -29.21 13.70 55.49 0.76 -28.45 16 26 Si 1.08 26.09 29.92 -169.99 -5.09 21.01 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 30 C 0.12 1.71 5.70 -3.71 -0.02 1.69 16 31 H 0.08 0.58 5.57 -51.93 -0.29 0.30 16 32 H 0.07 0.38 8.00 -51.93 -0.42 -0.03 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.34 7.97 -51.93 -0.41 -0.07 16 35 H 0.06 0.36 8.04 -51.93 -0.42 -0.05 16 36 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.49 4.71 -51.93 -0.24 0.25 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.71 7.53 -51.93 -0.39 0.32 16 44 H 0.08 1.25 7.16 -51.93 -0.37 0.88 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.37 9.33 5.69 -40.82 -0.23 9.10 16 49 H 0.25 7.69 6.77 -40.82 -0.28 7.41 16 50 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.09 1.48 7.04 -51.93 -0.37 1.11 16 LS Contribution 407.15 15.07 6.14 6.14 Total: -1.00 -37.19 407.15 -10.11 -47.30 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -8.05 Total: 5.54 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -2.15 Total: -5.81 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -0.21 Total: -60.12 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.75 Total: -14.06 kcal Atomic # 14 Polarization: 26.09 SS G_CDS: -5.09 Total: 21.01 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.19 -10.11 -47.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752806667.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.959 kcal (2) G-P(sol) polarization free energy of solvation -37.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds