Wall clock time and date at job start Wed Apr 1 2020 04:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47070 * 2 1 4 4 O 1.42897 * 109.47161 * 239.99730 * 2 1 3 5 5 C 1.42897 * 113.99692 * 90.00247 * 4 2 1 6 6 C 1.50706 * 109.46808 * 179.97438 * 5 4 2 7 7 C 1.38645 * 120.78808 * 269.71142 * 6 5 4 8 8 C 1.38207 * 119.15897 * 179.75588 * 7 6 5 9 9 N 1.31869 * 120.76746 * 0.53797 * 8 7 6 10 10 C 1.31876 * 121.72113 * 359.73909 * 9 8 7 11 11 C 1.38198 * 120.76561 * 359.97438 * 10 9 8 12 12 C 1.50700 * 109.47096 * 119.99415 * 2 1 3 13 13 O 1.21286 * 119.99874 * 109.51127 * 12 2 1 14 14 N 1.34781 * 120.00477 * 289.51665 * 12 2 1 15 15 C 1.46921 * 120.62570 * 354.70961 * 14 12 2 16 16 C 1.53196 * 108.77393 * 126.36930 * 15 14 12 17 17 C 1.53046 * 109.31198 * 54.63505 * 16 15 14 18 18 C 1.53045 * 109.53818 * 298.63825 * 17 16 15 19 19 H 1.09006 * 109.51928 * 301.39736 * 18 17 16 20 20 C 1.52997 * 109.49777 * 181.31476 * 18 17 16 21 21 N 1.46497 * 109.46995 * 65.16111 * 20 18 17 22 22 C 1.36944 * 119.99711 * 180.02562 * 21 20 18 23 23 H 1.07995 * 120.00043 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99724 * 179.97438 * 22 21 20 25 25 N 1.31616 * 120.00279 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99882 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47057 * 180.02562 * 26 24 22 28 28 H 1.48493 * 109.47265 * 300.00049 * 26 24 22 29 29 H 1.48501 * 109.47067 * 60.00250 * 26 24 22 30 30 C 1.46924 * 120.63192 * 174.68811 * 14 12 2 31 31 H 1.08999 * 109.47220 * 294.41159 * 1 2 3 32 32 H 1.08994 * 109.47340 * 54.41684 * 1 2 3 33 33 H 1.09005 * 109.46495 * 174.41072 * 1 2 3 34 34 H 1.09004 * 109.47382 * 299.99617 * 5 4 2 35 35 H 1.09000 * 109.47715 * 59.99515 * 5 4 2 36 36 H 1.08002 * 120.42278 * 0.02562 * 7 6 5 37 37 H 1.08002 * 119.61692 * 180.30068 * 8 7 6 38 38 H 1.07992 * 119.61401 * 180.02562 * 10 9 8 39 39 H 1.08004 * 120.42148 * 180.02562 * 11 10 9 40 40 H 1.08997 * 109.58585 * 246.15573 * 15 14 12 41 41 H 1.08998 * 109.58992 * 6.58658 * 15 14 12 42 42 H 1.08999 * 109.50170 * 174.57895 * 16 15 14 43 43 H 1.09001 * 109.49998 * 294.65408 * 16 15 14 44 44 H 1.08992 * 109.46309 * 178.61299 * 17 16 15 45 45 H 1.09007 * 109.45616 * 58.65327 * 17 16 15 46 46 H 1.08998 * 109.47022 * 305.15843 * 20 18 17 47 47 H 1.08995 * 109.46883 * 185.15674 * 20 18 17 48 48 H 0.96997 * 120.00706 * 359.97438 * 21 20 18 49 49 H 0.97000 * 119.99950 * 359.97438 * 25 24 22 50 50 H 1.09001 * 109.58263 * 113.84213 * 30 14 12 51 51 H 1.09001 * 109.58657 * 353.42191 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2001 0.1829 -2.2940 6 6 2.7015 -0.6283 -3.4609 7 6 4.0605 -0.8065 -3.6697 8 6 4.4830 -1.5611 -4.7477 9 7 3.6109 -2.0991 -5.5777 10 6 2.3114 -1.9459 -5.4133 11 6 1.8148 -1.2093 -4.3546 12 6 2.0323 -0.7103 1.2305 13 8 2.5652 -1.7951 1.1295 14 7 1.8894 -0.1401 2.4434 15 6 1.3519 1.2212 2.5719 16 6 0.1703 1.1948 3.5465 17 6 0.6190 0.5688 4.8691 18 6 1.0759 -0.8713 4.6247 19 1 0.2574 -1.4440 4.1885 20 6 1.4933 -1.5069 5.9523 21 7 0.3249 -1.6183 6.8290 22 6 0.4565 -2.1606 8.0796 23 1 1.4215 -2.5065 8.4193 24 6 -0.6505 -2.2657 8.9105 25 7 -1.8267 -1.8447 8.4962 26 14 -0.4711 -3.0061 10.6161 27 1 -1.7906 -3.0049 11.2975 28 1 0.0245 -4.4011 10.5006 29 1 0.4951 -2.2013 11.4059 30 6 2.2676 -0.8683 3.6622 31 1 -0.3633 0.4247 0.9358 32 1 -0.3634 0.5979 -0.8357 33 1 -0.3632 -1.0229 -0.1001 34 1 1.2538 0.6546 -2.5588 35 1 2.9319 0.9514 -2.0450 36 1 4.7798 -0.3649 -2.9959 37 1 5.5398 -1.7087 -4.9145 38 1 1.6274 -2.4020 -6.1135 39 1 0.7495 -1.0878 -4.2250 40 1 2.1267 1.8853 2.9548 41 1 1.0139 1.5741 1.5975 42 1 -0.1768 2.2125 3.7252 43 1 -0.6400 0.6035 3.1201 44 1 -0.2133 0.5712 5.5728 45 1 1.4456 1.1468 5.2824 46 1 2.2490 -0.8845 6.4314 47 1 1.9041 -2.4992 5.7667 48 1 -0.5418 -1.3074 6.5240 49 1 -1.9199 -1.4606 7.6104 50 1 3.1171 -0.3745 4.1340 51 1 2.5340 -1.8941 3.4072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752806667.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:44 Heat of formation + Delta-G solvation = -57.642756 kcal Electronic energy + Delta-G solvation = -30187.015789 eV Core-core repulsion = 26085.669431 eV Total energy + Delta-G solvation = -4101.346357 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.63860 -41.09940 -39.43558 -38.43924 -36.93011 -34.90527 -34.30438 -33.00667 -32.45871 -32.17077 -31.15438 -27.91603 -27.16247 -26.83002 -25.17566 -24.44850 -24.14801 -23.22811 -22.98690 -21.49794 -20.10431 -19.42025 -18.76758 -17.95989 -17.60818 -17.46454 -16.94731 -16.68625 -16.52968 -16.33795 -16.08028 -15.75027 -15.66026 -15.45126 -15.24088 -14.83348 -14.71422 -14.59658 -14.41787 -14.11140 -14.00841 -13.76661 -13.55244 -13.27452 -13.08367 -12.96255 -12.79256 -12.61924 -12.51784 -12.33530 -12.16701 -11.92788 -11.86608 -11.72411 -11.49875 -11.29247 -11.03800 -10.94662 -10.77971 -10.52476 -10.48936 -10.11410 -9.75128 -9.13856 -8.43021 -5.36584 0.11323 0.17394 1.44243 1.57160 1.67049 1.67244 1.83820 2.59562 2.69554 3.02191 3.33345 3.36862 3.56011 3.61093 3.66299 3.71155 3.75037 3.81233 3.87761 3.94745 4.01015 4.09465 4.18197 4.18354 4.24825 4.32531 4.36582 4.41698 4.49141 4.57117 4.60141 4.67750 4.69401 4.72855 4.78389 4.79686 4.86091 4.86611 4.96385 5.09982 5.10321 5.20099 5.29327 5.31842 5.38897 5.43318 5.55362 5.73136 5.96773 6.33543 6.46966 6.97857 7.04994 7.06708 7.96720 8.07854 9.08920 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.001748 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.683178 B =16014.163181 C =16377.330010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.079 3.921 3 H 0.127 0.873 4 O -0.383 6.383 5 C 0.095 3.905 6 C -0.060 4.060 7 C -0.159 4.159 8 C 0.082 3.918 9 N -0.512 5.512 10 C 0.082 3.918 11 C -0.155 4.155 12 C 0.506 3.494 13 O -0.579 6.579 14 N -0.603 5.603 15 C 0.099 3.901 16 C -0.129 4.129 17 C -0.108 4.108 18 C -0.093 4.093 19 H 0.051 0.949 20 C 0.163 3.837 21 N -0.752 5.752 22 C -0.339 4.339 23 H 0.064 0.936 24 C -0.103 4.103 25 N -0.972 5.972 26 Si 1.129 2.871 27 H -0.291 1.291 28 H -0.281 1.281 29 H -0.275 1.275 30 C 0.129 3.871 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.175 0.825 38 H 0.177 0.823 39 H 0.157 0.843 40 H 0.094 0.906 41 H 0.119 0.881 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.044 0.956 45 H 0.071 0.929 46 H 0.028 0.972 47 H 0.008 0.992 48 H 0.362 0.638 49 H 0.244 0.756 50 H 0.085 0.915 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.924 14.027 -27.505 31.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.018 3.982 3 H 0.144 0.856 4 O -0.302 6.302 5 C 0.020 3.980 6 C -0.069 4.069 7 C -0.179 4.179 8 C -0.074 4.074 9 N -0.222 5.222 10 C -0.074 4.074 11 C -0.174 4.174 12 C 0.294 3.706 13 O -0.458 6.458 14 N -0.337 5.337 15 C -0.022 4.022 16 C -0.167 4.167 17 C -0.145 4.145 18 C -0.113 4.113 19 H 0.070 0.930 20 C 0.036 3.964 21 N -0.397 5.397 22 C -0.470 4.470 23 H 0.082 0.918 24 C -0.294 4.294 25 N -0.620 5.620 26 Si 0.953 3.047 27 H -0.217 1.217 28 H -0.207 1.207 29 H -0.201 1.201 30 C 0.006 3.994 31 H 0.106 0.894 32 H 0.121 0.879 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.168 0.832 37 H 0.192 0.808 38 H 0.194 0.806 39 H 0.175 0.825 40 H 0.112 0.888 41 H 0.137 0.863 42 H 0.123 0.877 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.045 0.955 47 H 0.026 0.974 48 H 0.195 0.805 49 H 0.054 0.946 50 H 0.103 0.897 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.989 12.306 -26.833 30.582 hybrid contribution 0.179 0.502 -0.444 0.693 sum 8.168 12.808 -27.276 31.221 Atomic orbital electron populations 1.22353 0.91775 1.03509 1.05316 1.22009 0.96145 0.96956 0.83065 0.85565 1.88108 1.86925 1.35543 1.19632 1.21647 1.02077 0.91243 0.83058 1.20284 0.93963 0.97224 0.95380 1.22349 0.96421 0.99889 0.99191 1.23156 1.00611 0.93053 0.90593 1.67689 1.04386 1.20555 1.29579 1.23210 0.91900 0.95479 0.96820 1.22369 1.02136 0.97609 0.95318 1.21200 0.78244 0.85682 0.85432 1.90703 1.44733 1.23705 1.86611 1.48136 1.63532 1.17274 1.04721 1.22231 0.96629 0.81128 1.02197 1.21943 0.97787 1.02766 0.94194 1.21469 1.01092 0.93870 0.98104 1.21488 0.97755 0.97827 0.94196 0.93020 1.20652 0.89548 0.96580 0.89610 1.42506 1.06985 1.75386 1.14824 1.20403 0.96896 1.36218 0.93487 0.91773 1.27239 0.91826 1.01940 1.08395 1.70996 1.24668 1.46038 1.20280 0.82618 0.75427 0.75730 0.70916 1.21651 1.20723 1.20113 1.21360 0.96317 0.97639 0.84116 0.89430 0.87863 0.93331 0.88935 0.89826 0.83223 0.80813 0.80558 0.82499 0.88808 0.86331 0.87735 0.91943 0.93720 0.91054 0.95454 0.97391 0.80539 0.94612 0.89719 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 9.11 71.98 0.66 -1.49 16 2 C 0.08 1.26 2.28 29.85 0.07 1.33 16 3 H 0.13 0.94 6.77 -2.39 -0.02 0.92 16 4 O -0.38 -7.79 9.53 -130.16 -1.24 -9.03 16 5 C 0.10 1.10 5.92 71.24 0.42 1.52 16 6 C -0.06 -0.92 5.55 -19.67 -0.11 -1.03 16 7 C -0.16 -2.44 9.82 22.36 0.22 -2.22 16 8 C 0.08 1.36 11.18 84.68 0.95 2.31 16 9 N -0.51 -10.07 10.36 -195.85 -2.03 -12.10 16 10 C 0.08 1.30 11.18 84.68 0.95 2.24 16 11 C -0.15 -2.17 9.82 22.36 0.22 -1.95 16 12 C 0.51 13.06 7.03 87.66 0.62 13.68 16 13 O -0.58 -21.58 15.97 15.78 0.25 -21.32 16 14 N -0.60 -13.43 2.97 -818.92 -2.43 -15.86 16 15 C 0.10 1.30 5.50 86.36 0.47 1.77 16 16 C -0.13 -2.20 5.96 30.68 0.18 -2.01 16 17 C -0.11 -2.89 5.06 30.62 0.15 -2.73 16 18 C -0.09 -2.98 2.37 -10.72 -0.03 -3.01 16 19 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 20 C 0.16 6.76 5.65 86.38 0.49 7.25 16 21 N -0.75 -38.91 5.32 -343.47 -1.83 -40.74 16 22 C -0.34 -19.59 9.99 84.03 0.84 -18.75 16 23 H 0.06 3.64 7.83 -2.91 -0.02 3.61 16 24 C -0.10 -6.05 5.50 84.86 0.47 -5.59 16 25 N -0.97 -61.20 13.70 21.65 0.30 -60.90 16 26 Si 1.13 52.53 29.92 68.60 2.05 54.58 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 28 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 29 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 30 C 0.13 3.61 5.70 86.36 0.49 4.11 16 31 H 0.09 0.95 5.57 -2.39 -0.01 0.93 16 32 H 0.10 0.62 8.00 -2.39 -0.02 0.60 16 33 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.09 0.55 7.97 -2.38 -0.02 0.53 16 35 H 0.08 0.62 8.04 -2.39 -0.02 0.60 16 36 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 37 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.18 1.80 8.06 -2.91 -0.02 1.77 16 39 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.12 0.74 4.71 -2.39 -0.01 0.73 16 42 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.06 1.16 7.53 -2.39 -0.02 1.14 16 44 H 0.04 1.48 7.16 -2.39 -0.02 1.47 16 45 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 46 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 48 H 0.36 19.18 5.69 -92.71 -0.53 18.65 16 49 H 0.24 15.25 6.77 -92.71 -0.63 14.62 16 50 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 51 H 0.07 2.21 7.04 -2.39 -0.02 2.20 16 Total: -1.00 -85.29 407.15 2.67 -82.61 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.54 Total: 27.32 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 7.06 Total: -4.57 kcal Atomic # 7 Polarization: -123.60 SS G_CDS: -5.99 Total: -129.60 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.99 Total: -30.35 kcal Atomic # 14 Polarization: 52.53 SS G_CDS: 2.05 Total: 54.58 kcal Total: -85.29 2.67 -82.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752806667.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.969 kcal (2) G-P(sol) polarization free energy of solvation -85.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds