Wall clock time and date at job start Wed Apr 1 2020 04:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47216 * 2 1 4 4 O 1.42905 * 109.46761 * 119.99770 * 2 1 3 5 5 C 1.42902 * 113.99772 * 269.99560 * 4 2 1 6 6 C 1.50697 * 109.47017 * 180.02562 * 5 4 2 7 7 C 1.38651 * 120.78950 * 269.71929 * 6 5 4 8 8 C 1.38204 * 119.16426 * 179.75330 * 7 6 5 9 9 N 1.31873 * 120.76176 * 0.53608 * 8 7 6 10 10 C 1.31867 * 121.72362 * 359.74053 * 9 8 7 11 11 C 1.38203 * 120.77026 * 359.97438 * 10 9 8 12 12 C 1.50702 * 109.46963 * 239.99489 * 2 1 3 13 13 O 1.21287 * 119.99734 * 249.75764 * 12 2 1 14 14 N 1.34769 * 119.99747 * 69.48339 * 12 2 1 15 15 C 1.46919 * 120.63533 * 5.09016 * 14 12 2 16 16 C 1.52762 * 109.01512 * 233.58614 * 15 14 12 17 17 C 1.53041 * 109.37982 * 305.58884 * 16 15 14 18 18 C 1.53041 * 109.53869 * 61.23739 * 17 16 15 19 19 H 1.09000 * 109.52620 * 58.59826 * 18 17 16 20 20 C 1.52998 * 109.49978 * 178.68117 * 18 17 16 21 21 N 1.46500 * 109.47254 * 294.84359 * 20 18 17 22 22 C 1.36941 * 120.00200 * 179.97438 * 21 20 18 23 23 H 1.07998 * 119.99660 * 0.02562 * 22 21 20 24 24 C 1.38812 * 119.99874 * 179.97438 * 22 21 20 25 25 N 1.31616 * 120.00275 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99791 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47243 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47152 * 120.00433 * 26 24 22 29 29 H 1.48501 * 109.47359 * 240.00600 * 26 24 22 30 30 C 1.46930 * 120.62913 * 185.37238 * 14 12 2 31 31 H 1.09000 * 109.46894 * 305.13803 * 1 2 3 32 32 H 1.08997 * 109.46559 * 65.13783 * 1 2 3 33 33 H 1.09000 * 109.47328 * 185.13881 * 1 2 3 34 34 H 1.08996 * 109.47098 * 300.00261 * 5 4 2 35 35 H 1.09002 * 109.46843 * 60.00210 * 5 4 2 36 36 H 1.07999 * 120.41983 * 0.02562 * 7 6 5 37 37 H 1.07999 * 119.62403 * 180.29660 * 8 7 6 38 38 H 1.08001 * 119.61764 * 180.02562 * 10 9 8 39 39 H 1.07999 * 120.42257 * 180.02562 * 11 10 9 40 40 H 1.09000 * 109.58642 * 353.42533 * 15 14 12 41 41 H 1.09002 * 109.58800 * 113.84590 * 15 14 12 42 42 H 1.08996 * 109.56515 * 185.55378 * 16 15 14 43 43 H 1.09001 * 109.38447 * 65.51416 * 16 15 14 44 44 H 1.08996 * 109.45904 * 301.21480 * 17 16 15 45 45 H 1.09001 * 109.45988 * 181.25757 * 17 16 15 46 46 H 1.09008 * 109.46880 * 54.83648 * 20 18 17 47 47 H 1.08998 * 109.47414 * 174.83761 * 20 18 17 48 48 H 0.97001 * 119.99852 * 359.97438 * 21 20 18 49 49 H 0.96996 * 120.00303 * 179.97438 * 25 24 22 50 50 H 1.09003 * 109.58869 * 246.15520 * 30 14 12 51 51 H 1.08997 * 109.58580 * 6.58148 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2001 0.1830 2.2941 6 6 2.7014 -0.6280 3.4611 7 6 1.8148 -1.2040 4.3581 8 6 2.3111 -1.9454 5.4136 9 7 3.6105 -2.0987 5.5781 10 6 4.4827 -1.5608 4.7481 11 6 4.0603 -0.8112 3.6666 12 6 2.0324 -0.7105 -1.2304 13 8 2.5771 -1.7893 -1.1278 14 7 1.8713 -0.1498 -2.4453 15 6 1.3093 1.2012 -2.5777 16 6 0.1250 1.1554 -3.5415 17 6 0.5705 0.5273 -4.8640 18 6 1.0485 -0.9051 -4.6149 19 1 0.2417 -1.4859 -4.1681 20 6 1.4628 -1.5433 -5.9422 21 7 0.2884 -1.6756 -6.8081 22 6 0.4163 -2.2238 -8.0564 23 1 1.3828 -2.5590 -8.4025 24 6 -0.6966 -2.3495 -8.8765 25 7 -1.8746 -1.9414 -8.4546 26 14 -0.5220 -3.0967 -10.5796 27 1 0.8958 -3.4721 -10.8126 28 1 -1.3769 -4.3068 -10.6793 29 1 -0.9462 -2.1055 -11.6009 30 6 2.2486 -0.8803 -3.6630 31 1 -0.3633 0.5915 0.8404 32 1 -0.3632 0.4321 -0.9324 33 1 -0.3634 -1.0235 0.0920 34 1 2.9320 0.9514 2.0450 35 1 1.2538 0.6548 2.5588 36 1 0.7496 -1.0785 4.2311 37 1 1.6270 -2.4014 6.1140 38 1 5.5395 -1.7085 4.9149 39 1 4.7795 -0.3736 2.9902 40 1 0.9721 1.5538 -1.6030 41 1 2.0699 1.8766 -2.9697 42 1 -0.2371 2.1673 -3.7231 43 1 -0.6738 0.5560 -3.1048 44 1 1.3856 1.1136 -5.2881 45 1 -0.2679 0.5143 -5.5605 46 1 2.2060 -0.9138 -6.4318 47 1 1.8885 -2.5290 -5.7543 48 1 -0.5798 -1.3748 -6.4971 49 1 -2.6522 -2.0289 -9.0278 50 1 3.0873 -0.3783 -4.1453 51 1 2.5307 -1.9008 -3.4042 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752806669.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:52 Heat of formation + Delta-G solvation = -33.537200 kcal Electronic energy + Delta-G solvation = -30142.509907 eV Core-core repulsion = 26042.208845 eV Total energy + Delta-G solvation = -4100.301062 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.72270 -40.40333 -38.47949 -37.32950 -35.09060 -33.87897 -32.92807 -31.86009 -31.59346 -31.36678 -29.77293 -27.32608 -25.96948 -25.61149 -23.89236 -23.78683 -22.73193 -22.38332 -21.91410 -20.13653 -19.07078 -17.97367 -17.28476 -17.06188 -16.91954 -16.65833 -16.00496 -15.79043 -15.62389 -14.99113 -14.81014 -14.56173 -14.26514 -14.19584 -14.08266 -14.03222 -13.74848 -13.43037 -13.27812 -13.06199 -12.78871 -12.74021 -12.50024 -12.29618 -12.08542 -11.95270 -11.85356 -11.62793 -11.10086 -10.92531 -10.84990 -10.67064 -10.38577 -10.32086 -10.20115 -10.14602 -9.98727 -9.87034 -9.74153 -9.54326 -9.52025 -8.88622 -8.65164 -6.92051 -5.77396 -3.05558 0.72888 0.76376 2.46868 2.58527 3.29180 3.43090 3.49109 3.51107 3.65390 4.08888 4.13691 4.25299 4.31857 4.46747 4.58746 4.61790 4.65535 4.67725 4.73345 4.85755 4.90506 4.92011 4.97401 5.13885 5.21659 5.23758 5.27146 5.30512 5.39423 5.39907 5.54871 5.55484 5.57704 5.73213 5.80098 5.86708 5.89632 5.94555 6.04278 6.14945 6.18459 6.29541 6.42189 6.44231 6.62225 6.66209 6.78301 6.87682 7.30116 7.58513 7.70762 8.08581 8.41747 9.53129 10.10754 10.45540 11.45663 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023311 B = 0.001746 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.853453 B =16030.829653 C =16395.145553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.073 3.927 3 H 0.085 0.915 4 O -0.349 6.349 5 C 0.098 3.902 6 C -0.044 4.044 7 C -0.151 4.151 8 C 0.096 3.904 9 N -0.483 5.483 10 C 0.096 3.904 11 C -0.150 4.150 12 C 0.515 3.485 13 O -0.519 6.519 14 N -0.606 5.606 15 C 0.101 3.899 16 C -0.137 4.137 17 C -0.111 4.111 18 C -0.107 4.107 19 H 0.074 0.926 20 C 0.160 3.840 21 N -0.730 5.730 22 C -0.237 4.237 23 H 0.071 0.929 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 C 0.121 3.879 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.137 0.863 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.021 0.979 47 H 0.021 0.979 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.069 0.931 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.380 11.761 26.556 29.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.011 3.989 3 H 0.103 0.897 4 O -0.267 6.267 5 C 0.022 3.978 6 C -0.052 4.052 7 C -0.171 4.171 8 C -0.061 4.061 9 N -0.192 5.192 10 C -0.060 4.060 11 C -0.169 4.169 12 C 0.301 3.699 13 O -0.394 6.394 14 N -0.341 5.341 15 C -0.022 4.022 16 C -0.175 4.175 17 C -0.149 4.149 18 C -0.126 4.126 19 H 0.092 0.908 20 C 0.031 3.969 21 N -0.375 5.375 22 C -0.369 4.369 23 H 0.089 0.911 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.001 4.001 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.155 0.845 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.154 0.846 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.039 0.961 47 H 0.039 0.961 48 H 0.218 0.782 49 H 0.064 0.936 50 H 0.087 0.913 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.109 10.402 27.185 30.216 hybrid contribution -0.744 0.534 -1.715 1.945 sum 7.365 10.937 25.470 28.680 Atomic orbital electron populations 1.22356 0.93128 1.04403 1.03529 1.21931 0.95424 0.96061 0.85439 0.89738 1.88146 1.86584 1.33485 1.18442 1.21419 1.00119 0.91640 0.84672 1.19952 0.93706 0.96861 0.94704 1.22093 1.01038 0.98202 0.95753 1.22792 0.91977 0.95257 0.96088 1.67676 1.03410 1.19528 1.28589 1.22793 0.99766 0.93022 0.90456 1.22110 0.95849 0.99903 0.99082 1.20248 0.79466 0.86121 0.84029 1.90732 1.41688 1.21224 1.85740 1.48049 1.63330 1.16983 1.05746 1.21828 0.96542 0.83273 1.00510 1.21902 0.97244 1.01751 0.96597 1.21529 1.02159 0.95070 0.96145 1.21679 0.97502 0.97039 0.96410 0.90771 1.20587 0.91229 0.96662 0.88387 1.42344 1.05717 1.74646 1.14774 1.19290 0.94274 1.32106 0.91196 0.91115 1.24731 0.95474 1.02108 0.98759 1.69663 0.98630 1.53122 1.36892 0.86114 0.77219 0.78474 0.84382 1.20555 1.21894 1.21900 1.21666 0.96985 0.98079 0.83409 0.91228 0.90082 0.90667 0.91764 0.91623 0.84543 0.82503 0.82489 0.84555 0.90109 0.91040 0.90654 0.91424 0.91984 0.90129 0.96134 0.96146 0.78244 0.93608 0.91278 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 9.11 37.16 0.34 -1.06 16 2 C 0.07 0.70 2.28 -27.88 -0.06 0.63 16 3 H 0.08 0.55 6.84 -51.93 -0.36 0.20 16 4 O -0.35 -3.92 9.52 -54.95 -0.52 -4.44 16 5 C 0.10 0.73 5.92 36.00 0.21 0.94 16 6 C -0.04 -0.37 5.55 -104.32 -0.58 -0.95 16 7 C -0.15 -1.17 9.82 -39.44 -0.39 -1.56 16 8 C 0.10 0.79 11.18 -17.55 -0.20 0.59 16 9 N -0.48 -4.79 10.36 -13.25 -0.14 -4.93 16 10 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16 11 C -0.15 -1.22 9.82 -39.44 -0.39 -1.61 16 12 C 0.52 6.96 7.04 -10.99 -0.08 6.89 16 13 O -0.52 -9.44 15.96 -14.17 -0.23 -9.66 16 14 N -0.61 -7.31 2.98 -173.03 -0.52 -7.82 16 15 C 0.10 0.88 5.46 -3.94 -0.02 0.86 16 16 C -0.14 -1.39 5.93 -26.83 -0.16 -1.55 16 17 C -0.11 -1.55 5.06 -26.69 -0.13 -1.69 16 18 C -0.11 -1.68 2.37 -90.50 -0.21 -1.90 16 19 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 20 C 0.16 3.17 5.65 -4.04 -0.02 3.14 16 21 N -0.73 -18.27 5.32 -59.91 -0.32 -18.59 16 22 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 23 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 24 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 25 N -0.93 -28.09 13.06 55.49 0.72 -27.37 16 26 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 30 C 0.12 1.69 5.70 -3.71 -0.02 1.67 16 31 H 0.07 0.39 7.99 -51.93 -0.42 -0.03 16 32 H 0.08 0.60 5.40 -51.93 -0.28 0.32 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.37 8.04 -51.93 -0.42 -0.05 16 35 H 0.07 0.34 7.95 -51.93 -0.41 -0.07 16 36 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 37 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.08 0.50 4.66 -51.93 -0.24 0.26 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.72 7.51 -51.93 -0.39 0.33 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.35 7.16 -51.93 -0.37 0.98 16 46 H 0.02 0.41 8.14 -51.92 -0.42 -0.02 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.38 10.00 6.86 -40.82 -0.28 9.72 16 49 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 50 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 51 H 0.09 1.46 7.04 -51.93 -0.37 1.10 16 LS Contribution 408.60 15.07 6.16 6.16 Total: -1.00 -35.95 408.60 -10.17 -46.12 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -8.15 Total: 5.40 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -2.16 Total: -2.30 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -0.25 Total: -58.71 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.75 Total: -14.11 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.95 -10.17 -46.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752806669.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.582 kcal (2) G-P(sol) polarization free energy of solvation -35.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds