Wall clock time and date at job start Wed Apr 1 2020 04:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47216 * 2 1 4 4 O 1.42905 * 109.46761 * 119.99770 * 2 1 3 5 5 C 1.42902 * 113.99772 * 269.99560 * 4 2 1 6 6 C 1.50697 * 109.47017 * 180.02562 * 5 4 2 7 7 C 1.38651 * 120.78950 * 269.71929 * 6 5 4 8 8 C 1.38204 * 119.16426 * 179.75330 * 7 6 5 9 9 N 1.31873 * 120.76176 * 0.53608 * 8 7 6 10 10 C 1.31867 * 121.72362 * 359.74053 * 9 8 7 11 11 C 1.38203 * 120.77026 * 359.97438 * 10 9 8 12 12 C 1.50702 * 109.46963 * 239.99489 * 2 1 3 13 13 O 1.21287 * 119.99734 * 249.75764 * 12 2 1 14 14 N 1.34769 * 119.99747 * 69.48339 * 12 2 1 15 15 C 1.46919 * 120.63533 * 5.09016 * 14 12 2 16 16 C 1.52762 * 109.01512 * 233.58614 * 15 14 12 17 17 C 1.53041 * 109.37982 * 305.58884 * 16 15 14 18 18 C 1.53041 * 109.53869 * 61.23739 * 17 16 15 19 19 H 1.09000 * 109.52620 * 58.59826 * 18 17 16 20 20 C 1.52998 * 109.49978 * 178.68117 * 18 17 16 21 21 N 1.46500 * 109.47254 * 294.84359 * 20 18 17 22 22 C 1.36941 * 120.00200 * 179.97438 * 21 20 18 23 23 H 1.07998 * 119.99660 * 0.02562 * 22 21 20 24 24 C 1.38812 * 119.99874 * 179.97438 * 22 21 20 25 25 N 1.31616 * 120.00275 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99791 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47243 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47152 * 120.00433 * 26 24 22 29 29 H 1.48501 * 109.47359 * 240.00600 * 26 24 22 30 30 C 1.46930 * 120.62913 * 185.37238 * 14 12 2 31 31 H 1.09000 * 109.46894 * 305.13803 * 1 2 3 32 32 H 1.08997 * 109.46559 * 65.13783 * 1 2 3 33 33 H 1.09000 * 109.47328 * 185.13881 * 1 2 3 34 34 H 1.08996 * 109.47098 * 300.00261 * 5 4 2 35 35 H 1.09002 * 109.46843 * 60.00210 * 5 4 2 36 36 H 1.07999 * 120.41983 * 0.02562 * 7 6 5 37 37 H 1.07999 * 119.62403 * 180.29660 * 8 7 6 38 38 H 1.08001 * 119.61764 * 180.02562 * 10 9 8 39 39 H 1.07999 * 120.42257 * 180.02562 * 11 10 9 40 40 H 1.09000 * 109.58642 * 353.42533 * 15 14 12 41 41 H 1.09002 * 109.58800 * 113.84590 * 15 14 12 42 42 H 1.08996 * 109.56515 * 185.55378 * 16 15 14 43 43 H 1.09001 * 109.38447 * 65.51416 * 16 15 14 44 44 H 1.08996 * 109.45904 * 301.21480 * 17 16 15 45 45 H 1.09001 * 109.45988 * 181.25757 * 17 16 15 46 46 H 1.09008 * 109.46880 * 54.83648 * 20 18 17 47 47 H 1.08998 * 109.47414 * 174.83761 * 20 18 17 48 48 H 0.97001 * 119.99852 * 359.97438 * 21 20 18 49 49 H 0.96996 * 120.00303 * 179.97438 * 25 24 22 50 50 H 1.09003 * 109.58869 * 246.15520 * 30 14 12 51 51 H 1.08997 * 109.58580 * 6.58148 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2001 0.1830 2.2941 6 6 2.7014 -0.6280 3.4611 7 6 1.8148 -1.2040 4.3581 8 6 2.3111 -1.9454 5.4136 9 7 3.6105 -2.0987 5.5781 10 6 4.4827 -1.5608 4.7481 11 6 4.0603 -0.8112 3.6666 12 6 2.0324 -0.7105 -1.2304 13 8 2.5771 -1.7893 -1.1278 14 7 1.8713 -0.1498 -2.4453 15 6 1.3093 1.2012 -2.5777 16 6 0.1250 1.1554 -3.5415 17 6 0.5705 0.5273 -4.8640 18 6 1.0485 -0.9051 -4.6149 19 1 0.2417 -1.4859 -4.1681 20 6 1.4628 -1.5433 -5.9422 21 7 0.2884 -1.6756 -6.8081 22 6 0.4163 -2.2238 -8.0564 23 1 1.3828 -2.5590 -8.4025 24 6 -0.6966 -2.3495 -8.8765 25 7 -1.8746 -1.9414 -8.4546 26 14 -0.5220 -3.0967 -10.5796 27 1 0.8958 -3.4721 -10.8126 28 1 -1.3769 -4.3068 -10.6793 29 1 -0.9462 -2.1055 -11.6009 30 6 2.2486 -0.8803 -3.6630 31 1 -0.3633 0.5915 0.8404 32 1 -0.3632 0.4321 -0.9324 33 1 -0.3634 -1.0235 0.0920 34 1 2.9320 0.9514 2.0450 35 1 1.2538 0.6548 2.5588 36 1 0.7496 -1.0785 4.2311 37 1 1.6270 -2.4014 6.1140 38 1 5.5395 -1.7085 4.9149 39 1 4.7795 -0.3736 2.9902 40 1 0.9721 1.5538 -1.6030 41 1 2.0699 1.8766 -2.9697 42 1 -0.2371 2.1673 -3.7231 43 1 -0.6738 0.5560 -3.1048 44 1 1.3856 1.1136 -5.2881 45 1 -0.2679 0.5143 -5.5605 46 1 2.2060 -0.9138 -6.4318 47 1 1.8885 -2.5290 -5.7543 48 1 -0.5798 -1.3748 -6.4971 49 1 -2.6522 -2.0289 -9.0278 50 1 3.0873 -0.3783 -4.1453 51 1 2.5307 -1.9008 -3.4042 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752806669.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:51 Heat of formation + Delta-G solvation = -56.795186 kcal Electronic energy + Delta-G solvation = -30143.518449 eV Core-core repulsion = 26042.208845 eV Total energy + Delta-G solvation = -4101.309604 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.59225 -41.07898 -39.36785 -38.37572 -36.67306 -34.76704 -34.23453 -32.97543 -32.47930 -32.15486 -31.24869 -27.89378 -27.34969 -26.81118 -25.08239 -24.42929 -24.03867 -23.10426 -22.96650 -21.40852 -20.02868 -19.23173 -18.69388 -17.91280 -17.56857 -17.42205 -16.88441 -16.61132 -16.47341 -16.41530 -15.81976 -15.74495 -15.52338 -15.31876 -15.16073 -14.79829 -14.71551 -14.57606 -14.34472 -14.04561 -13.86223 -13.69325 -13.48188 -13.32336 -13.16467 -12.93730 -12.81685 -12.73770 -12.49450 -12.30449 -12.13669 -12.07713 -11.94042 -11.72094 -11.56397 -11.38237 -11.00916 -10.94699 -10.75690 -10.48947 -10.47140 -10.09814 -9.69043 -9.00993 -7.96991 -5.25499 0.13095 0.18985 1.46047 1.47100 1.48847 1.57213 1.72788 2.54476 2.62869 3.04608 3.36309 3.38239 3.57683 3.69518 3.75751 3.77264 3.78496 3.88644 3.93118 4.03443 4.06514 4.11332 4.19903 4.28713 4.38688 4.39729 4.41680 4.43678 4.56750 4.63676 4.66839 4.69729 4.76810 4.78741 4.84590 4.87446 4.87727 4.96376 4.98141 5.16351 5.20054 5.27959 5.33646 5.41314 5.44621 5.49279 5.52591 5.74750 6.00179 6.25548 6.38746 6.99388 7.10254 7.32156 8.07101 8.31598 9.26661 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023311 B = 0.001746 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.853453 B =16030.829653 C =16395.145553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.079 3.921 3 H 0.127 0.873 4 O -0.383 6.383 5 C 0.095 3.905 6 C -0.060 4.060 7 C -0.155 4.155 8 C 0.082 3.918 9 N -0.512 5.512 10 C 0.082 3.918 11 C -0.159 4.159 12 C 0.506 3.494 13 O -0.579 6.579 14 N -0.603 5.603 15 C 0.099 3.901 16 C -0.130 4.130 17 C -0.108 4.108 18 C -0.093 4.093 19 H 0.051 0.949 20 C 0.157 3.843 21 N -0.741 5.741 22 C -0.247 4.247 23 H 0.074 0.926 24 C -0.074 4.074 25 N -0.968 5.968 26 Si 0.973 3.027 27 H -0.268 1.268 28 H -0.294 1.294 29 H -0.290 1.290 30 C 0.128 3.872 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.157 0.843 37 H 0.177 0.823 38 H 0.175 0.825 39 H 0.150 0.850 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.029 0.971 47 H 0.010 0.990 48 H 0.375 0.625 49 H 0.252 0.748 50 H 0.085 0.915 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.584 14.369 27.403 31.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.018 3.982 3 H 0.144 0.856 4 O -0.302 6.302 5 C 0.020 3.980 6 C -0.068 4.068 7 C -0.174 4.174 8 C -0.074 4.074 9 N -0.222 5.222 10 C -0.074 4.074 11 C -0.178 4.178 12 C 0.294 3.706 13 O -0.458 6.458 14 N -0.336 5.336 15 C -0.022 4.022 16 C -0.168 4.168 17 C -0.146 4.146 18 C -0.112 4.112 19 H 0.070 0.930 20 C 0.030 3.970 21 N -0.384 5.384 22 C -0.378 4.378 23 H 0.092 0.908 24 C -0.267 4.267 25 N -0.618 5.618 26 Si 0.803 3.197 27 H -0.192 1.192 28 H -0.222 1.222 29 H -0.217 1.217 30 C 0.005 3.995 31 H 0.121 0.879 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.175 0.825 37 H 0.194 0.806 38 H 0.192 0.808 39 H 0.168 0.832 40 H 0.135 0.865 41 H 0.112 0.888 42 H 0.122 0.878 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.047 0.953 47 H 0.028 0.972 48 H 0.208 0.792 49 H 0.060 0.940 50 H 0.103 0.897 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.335 13.052 28.046 32.038 hybrid contribution -0.768 -0.298 -1.951 2.118 sum 7.567 12.754 26.095 30.015 Atomic orbital electron populations 1.22367 0.91799 1.03492 1.05349 1.22011 0.96124 0.96968 0.83098 0.85605 1.88110 1.86935 1.35527 1.19632 1.21641 1.02055 0.91246 0.83082 1.20287 0.93959 0.97215 0.95367 1.22370 1.02132 0.97614 0.95311 1.23211 0.91901 0.95470 0.96841 1.67685 1.04386 1.20555 1.29602 1.23151 1.00602 0.93091 0.90578 1.22349 0.96437 0.99880 0.99179 1.21173 0.78369 0.85591 0.85440 1.90701 1.44467 1.23961 1.86677 1.48136 1.62778 1.18010 1.04681 1.22142 0.96350 0.81494 1.02220 1.21867 0.97736 1.02724 0.94427 1.21464 1.01134 0.93963 0.97997 1.21474 0.97556 0.97833 0.94361 0.93048 1.20728 0.89761 0.96627 0.89850 1.42513 1.06785 1.74366 1.14714 1.19676 0.94396 1.31446 0.92316 0.90828 1.25550 0.95272 1.03247 1.02594 1.69811 0.99215 1.54654 1.38168 0.85073 0.77590 0.77280 0.79805 1.19223 1.22165 1.21685 1.21392 0.96387 0.97559 0.84166 0.87939 0.89321 0.93344 0.89848 0.88957 0.82491 0.80565 0.80824 0.83233 0.86452 0.88840 0.87815 0.92065 0.91046 0.93472 0.95279 0.97213 0.79242 0.93963 0.89670 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 9.11 71.98 0.66 -1.53 16 2 C 0.08 1.27 2.28 29.85 0.07 1.34 16 3 H 0.13 0.96 6.84 -2.39 -0.02 0.95 16 4 O -0.38 -7.84 9.52 -130.13 -1.24 -9.08 16 5 C 0.10 1.12 5.92 71.24 0.42 1.54 16 6 C -0.06 -0.92 5.55 -19.67 -0.11 -1.03 16 7 C -0.15 -2.19 9.82 22.36 0.22 -1.97 16 8 C 0.08 1.30 11.18 84.68 0.95 2.25 16 9 N -0.51 -10.11 10.36 -195.84 -2.03 -12.14 16 10 C 0.08 1.37 11.18 84.68 0.95 2.32 16 11 C -0.16 -2.46 9.82 22.36 0.22 -2.24 16 12 C 0.51 13.11 7.04 87.66 0.62 13.73 16 13 O -0.58 -21.60 15.96 15.80 0.25 -21.35 16 14 N -0.60 -13.46 2.98 -819.74 -2.44 -15.91 16 15 C 0.10 1.32 5.46 86.22 0.47 1.79 16 16 C -0.13 -2.25 5.93 30.53 0.18 -2.07 16 17 C -0.11 -2.91 5.06 30.62 0.15 -2.76 16 18 C -0.09 -2.96 2.37 -10.72 -0.03 -2.99 16 19 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 20 C 0.16 6.40 5.65 86.38 0.49 6.89 16 21 N -0.74 -38.07 5.32 -343.45 -1.83 -39.89 16 22 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16 23 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 24 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 25 N -0.97 -59.27 13.06 21.65 0.28 -58.99 16 26 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 28 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 29 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 30 C 0.13 3.57 5.70 86.36 0.49 4.06 16 31 H 0.10 0.64 7.99 -2.39 -0.02 0.62 16 32 H 0.09 0.98 5.40 -2.39 -0.01 0.96 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 0.64 8.04 -2.39 -0.02 0.62 16 35 H 0.09 0.57 7.95 -2.39 -0.02 0.55 16 36 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 40 H 0.12 0.77 4.66 -2.39 -0.01 0.76 16 41 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.17 7.51 -2.39 -0.02 1.15 16 44 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.05 1.60 7.16 -2.39 -0.02 1.58 16 46 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.38 20.30 6.86 -92.71 -0.64 19.67 16 49 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 50 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 51 H 0.07 2.20 7.04 -2.39 -0.02 2.18 16 Total: -1.00 -82.26 408.60 2.37 -79.89 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.29 Total: 26.58 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 7.05 Total: 2.33 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -6.01 Total: -126.93 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.99 Total: -30.43 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -82.26 2.37 -79.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752806669.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.090 kcal (2) G-P(sol) polarization free energy of solvation -82.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds