Wall clock time and date at job start Wed Apr 1 2020 04:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47380 * 2 1 4 4 O 1.42904 * 109.46620 * 239.99906 * 2 1 3 5 5 C 1.35905 * 116.99906 * 88.97510 * 4 2 1 6 6 C 1.39143 * 120.47696 * 358.16509 * 5 4 2 7 7 C 1.38529 * 118.37821 * 180.02562 * 6 5 4 8 8 C 1.38257 * 119.21933 * 0.02562 * 7 6 5 9 9 N 1.31844 * 120.88835 * 359.97438 * 8 7 6 10 10 C 1.31835 * 121.77959 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.47182 * 120.00458 * 2 1 3 12 12 O 1.21273 * 120.00135 * 112.47123 * 11 2 1 13 13 N 1.34778 * 119.99588 * 292.46878 * 11 2 1 14 14 C 1.46931 * 120.62930 * 5.55538 * 13 11 2 15 15 C 1.52765 * 109.00673 * 233.58382 * 14 13 11 16 16 C 1.53045 * 109.38238 * 305.59095 * 15 14 13 17 17 C 1.53004 * 109.46007 * 181.25967 * 16 15 14 18 18 C 1.52997 * 109.46880 * 64.92988 * 17 16 15 19 19 N 1.46501 * 109.47134 * 179.97438 * 18 17 16 20 20 C 1.36931 * 120.00148 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00147 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00029 * 180.02562 * 20 19 18 23 23 N 1.31621 * 120.00133 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00022 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46920 * 90.00526 * 24 22 20 26 26 H 1.48501 * 109.46931 * 210.00384 * 24 22 20 27 27 H 1.48494 * 109.46851 * 330.00422 * 24 22 20 28 28 C 1.53041 * 109.53892 * 61.24071 * 16 15 14 29 29 C 1.46927 * 120.62850 * 185.83708 * 13 11 2 30 30 H 1.08999 * 109.46374 * 295.35306 * 1 2 3 31 31 H 1.08991 * 109.47019 * 55.34847 * 1 2 3 32 32 H 1.08996 * 109.47274 * 175.35317 * 1 2 3 33 33 H 1.08006 * 120.81186 * 0.02562 * 6 5 4 34 34 H 1.08004 * 120.39090 * 179.97438 * 7 6 5 35 35 H 1.08002 * 119.55136 * 180.02562 * 8 7 6 36 36 H 1.08000 * 119.65735 * 179.97438 * 10 9 8 37 37 H 1.08999 * 109.58883 * 353.41965 * 14 13 11 38 38 H 1.08995 * 109.58202 * 113.84740 * 14 13 11 39 39 H 1.08998 * 109.56373 * 185.55585 * 15 14 13 40 40 H 1.08997 * 109.36027 * 65.49877 * 15 14 13 41 41 H 1.08994 * 109.46193 * 301.21639 * 16 15 14 42 42 H 1.08996 * 109.47151 * 184.93515 * 17 16 15 43 43 H 1.09001 * 109.47083 * 304.93382 * 17 16 15 44 44 H 1.08996 * 109.47659 * 300.00216 * 18 17 16 45 45 H 1.09001 * 109.46940 * 60.00308 * 18 17 16 46 46 H 0.97002 * 119.99616 * 0.02562 * 19 18 17 47 47 H 0.97001 * 120.00288 * 180.02562 * 23 22 20 48 48 H 1.08998 * 109.49890 * 178.68493 * 28 16 15 49 49 H 1.09000 * 109.52242 * 58.60084 * 28 16 15 50 50 H 1.09003 * 109.58577 * 246.15461 * 29 13 11 51 51 H 1.08997 * 109.58573 * 6.43652 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.1915 0.0804 -2.2822 6 6 1.8864 1.4379 -2.2750 7 6 2.0915 2.1650 -3.4362 8 6 2.5881 1.5232 -4.5555 9 7 2.8671 0.2349 -4.5291 10 6 2.6863 -0.4925 -3.4446 11 6 2.0324 -0.7105 1.2304 12 8 2.6130 -1.7699 1.1243 13 7 1.8364 -0.1685 2.4487 14 6 1.0310 1.0504 2.6050 15 6 1.8468 2.0912 3.3698 16 6 2.3340 1.4859 4.6883 17 6 3.1249 2.5368 5.4701 18 6 2.1937 3.6834 5.8689 19 7 2.9507 4.6893 6.6180 20 6 2.3222 5.8139 7.0820 21 1 1.2683 5.9592 6.8960 22 6 3.0397 6.7673 7.7914 23 7 2.4355 7.8481 8.2378 24 14 4.8624 6.5158 8.1136 25 1 5.6482 7.1112 7.0031 26 1 5.2345 7.1740 9.3918 27 1 5.1534 5.0623 8.2022 28 6 3.2340 0.2827 4.3975 29 6 2.4293 -0.7817 3.6451 30 1 -0.3632 0.4401 0.9287 31 1 -0.3633 0.5843 -0.8453 32 1 -0.3633 -1.0242 -0.0833 33 1 1.4991 1.9132 -1.3858 34 1 1.8653 3.2207 -3.4670 35 1 2.7505 2.0850 -5.4635 36 1 2.9260 -1.5454 -3.4612 37 1 0.7686 1.4435 1.6228 38 1 0.1235 0.8196 3.1628 39 1 1.2249 2.9621 3.5771 40 1 2.7048 2.3911 2.7682 41 1 1.4765 1.1637 5.2788 42 1 3.5458 2.0819 6.3668 43 1 3.9308 2.9234 4.8463 44 1 1.7728 4.1383 4.9723 45 1 1.3878 3.2967 6.4927 46 1 3.8972 4.5587 6.7853 47 1 2.9369 8.5145 8.7332 48 1 3.5994 -0.1336 5.3362 49 1 4.0792 0.5993 3.7864 50 1 1.6381 -1.1650 4.2895 51 1 3.0872 -1.5987 3.3489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753572877.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:43 Heat of formation + Delta-G solvation = -20.332119 kcal Electronic energy + Delta-G solvation = -30347.801897 eV Core-core repulsion = 26248.073450 eV Total energy + Delta-G solvation = -4099.728447 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.44351 -40.49308 -38.82265 -37.83999 -35.63778 -34.04120 -32.91730 -32.63832 -31.37735 -31.19769 -30.34600 -28.91380 -26.05695 -24.93951 -24.08660 -23.71824 -23.34923 -22.39278 -21.17182 -20.57652 -19.51486 -19.04037 -17.65478 -17.52200 -17.22103 -16.79592 -16.29845 -16.06356 -15.36643 -15.03378 -14.85051 -14.68104 -14.59077 -14.42392 -14.24799 -14.01860 -13.95014 -13.61973 -13.45832 -13.23317 -13.04000 -12.84794 -12.75650 -12.65070 -12.32464 -12.04481 -11.73890 -11.63603 -11.52828 -11.42667 -11.23977 -10.89039 -10.74758 -10.44859 -10.31698 -10.27848 -10.10081 -10.03530 -9.99516 -9.63365 -9.01893 -8.92250 -8.87000 -7.26870 -5.81074 -3.16565 0.69643 0.78271 2.02036 2.15492 2.93961 3.33806 3.36259 3.36694 3.41944 3.82241 4.02738 4.09689 4.26570 4.28246 4.36494 4.39803 4.55066 4.57450 4.60244 4.64707 4.76760 4.77119 4.94460 4.95808 5.01184 5.05075 5.21285 5.29078 5.38375 5.44660 5.45000 5.49820 5.53814 5.57548 5.58553 5.60394 5.64667 5.83379 5.84622 5.91101 5.97565 6.03103 6.14811 6.19820 6.27540 6.68320 6.69030 6.73417 6.95109 7.53436 7.72316 7.95003 8.38157 9.17379 9.90037 10.09797 11.37304 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012808 B = 0.002069 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.526349 B =13531.933672 C =14783.267196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.064 3.936 3 H 0.101 0.899 4 O -0.277 6.277 5 C 0.082 3.918 6 C -0.170 4.170 7 C -0.127 4.127 8 C 0.056 3.944 9 N -0.446 5.446 10 C 0.077 3.923 11 C 0.521 3.479 12 O -0.519 6.519 13 N -0.605 5.605 14 C 0.096 3.904 15 C -0.136 4.136 16 C -0.082 4.082 17 C -0.126 4.126 18 C 0.157 3.843 19 N -0.758 5.758 20 C -0.245 4.245 21 H 0.089 0.911 22 C 0.003 3.997 23 N -0.934 5.934 24 Si 0.886 3.114 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.130 4.130 29 C 0.114 3.886 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.159 0.841 36 H 0.165 0.835 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.027 0.973 45 H 0.024 0.976 46 H 0.360 0.640 47 H 0.260 0.740 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.071 0.929 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.099 -17.331 -21.440 27.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.004 3.996 3 H 0.118 0.882 4 O -0.188 6.188 5 C 0.034 3.966 6 C -0.197 4.197 7 C -0.147 4.147 8 C -0.101 4.101 9 N -0.155 5.155 10 C -0.082 4.082 11 C 0.307 3.693 12 O -0.394 6.394 13 N -0.340 5.340 14 C -0.027 4.027 15 C -0.174 4.174 16 C -0.101 4.101 17 C -0.163 4.163 18 C 0.030 3.970 19 N -0.404 5.404 20 C -0.375 4.375 21 H 0.107 0.893 22 C -0.193 4.193 23 N -0.582 5.582 24 Si 0.716 3.284 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.168 4.168 29 C -0.008 4.008 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.176 0.824 36 H 0.182 0.818 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.042 0.958 46 H 0.193 0.807 47 H 0.070 0.930 48 H 0.097 0.903 49 H 0.085 0.915 50 H 0.089 0.911 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.616 -18.357 -22.160 29.002 hybrid contribution 0.872 0.842 1.274 1.759 sum -2.744 -17.515 -20.886 27.396 Atomic orbital electron populations 1.22519 0.92140 1.04941 1.04472 1.22276 0.96139 0.97169 0.84064 0.88181 1.86243 1.80569 1.35116 1.16890 1.20267 0.96890 0.90854 0.88556 1.21774 1.04182 0.93318 1.00409 1.22042 0.98301 1.01438 0.92932 1.22721 0.97973 0.90727 0.98676 1.67758 1.13746 1.07530 1.26498 1.22257 0.98918 1.00996 0.86061 1.19992 0.79838 0.85620 0.83873 1.90737 1.41377 1.21407 1.85844 1.48018 1.51929 1.27886 1.06171 1.22045 0.94363 0.84659 1.01590 1.22029 1.00721 0.98108 0.96511 1.21073 0.98491 0.94790 0.95756 1.21818 0.98858 0.96078 0.99589 1.20676 0.93540 0.88323 0.94491 1.42742 1.08439 1.22389 1.66796 1.19057 0.95534 0.94915 1.27972 0.89273 1.24695 0.97628 0.96654 1.00329 1.69702 1.35388 1.10704 1.42424 0.86527 0.86837 0.77350 0.77685 1.21091 1.21689 1.20371 1.22006 0.98512 0.95689 1.00613 1.21674 0.97709 0.96248 0.85124 0.89175 0.90589 0.90283 0.84099 0.84193 0.82358 0.81794 0.89587 0.90352 0.89218 0.91390 0.90615 0.91851 0.92066 0.95499 0.95785 0.80730 0.93043 0.90300 0.91480 0.91071 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 8.92 37.16 0.33 -0.73 16 2 C 0.06 0.52 1.80 -27.88 -0.05 0.47 16 3 H 0.10 0.65 5.32 -51.93 -0.28 0.37 16 4 O -0.28 -2.91 9.34 -39.24 -0.37 -3.27 16 5 C 0.08 0.76 6.67 -39.07 -0.26 0.50 16 6 C -0.17 -1.24 8.69 -39.14 -0.34 -1.58 16 7 C -0.13 -0.82 10.11 -39.47 -0.40 -1.22 16 8 C 0.06 0.42 11.18 -17.54 -0.20 0.22 16 9 N -0.45 -4.38 10.35 -13.13 -0.14 -4.52 16 10 C 0.08 0.73 11.14 -17.38 -0.19 0.54 16 11 C 0.52 5.63 7.10 -10.98 -0.08 5.55 16 12 O -0.52 -7.72 15.96 -14.23 -0.23 -7.95 16 13 N -0.60 -5.37 2.98 -173.03 -0.52 -5.89 16 14 C 0.10 0.65 5.05 -3.93 -0.02 0.63 16 15 C -0.14 -1.18 5.13 -26.83 -0.14 -1.31 16 16 C -0.08 -0.81 2.15 -90.57 -0.19 -1.01 16 17 C -0.13 -1.69 4.80 -26.73 -0.13 -1.82 16 18 C 0.16 2.78 6.01 -4.04 -0.02 2.76 16 19 N -0.76 -17.62 5.41 -59.91 -0.32 -17.94 16 20 C -0.24 -6.85 10.47 -15.06 -0.16 -7.00 16 21 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 22 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 23 N -0.93 -29.09 13.97 55.49 0.78 -28.31 16 24 Si 0.89 21.90 27.74 -169.99 -4.71 17.19 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 28 C -0.13 -1.18 5.36 -26.61 -0.14 -1.32 16 29 C 0.11 1.02 6.42 -3.71 -0.02 1.00 16 30 H 0.09 0.39 5.32 -51.93 -0.28 0.11 16 31 H 0.08 0.36 7.64 -51.93 -0.40 -0.04 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.14 0.73 5.84 -52.48 -0.31 0.42 16 34 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 35 H 0.16 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.09 0.41 4.50 -51.93 -0.23 0.18 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.82 6.50 -51.93 -0.34 0.48 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.03 0.47 6.53 -51.93 -0.34 0.13 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.36 8.20 5.53 -40.82 -0.23 7.98 16 47 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 48 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.09 0.94 7.04 -51.93 -0.37 0.57 16 LS Contribution 399.16 15.07 6.02 6.02 Total: -1.00 -35.73 399.16 -9.45 -45.18 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.85 Total: 3.84 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -2.11 Total: -4.34 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -0.20 Total: -56.66 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.59 Total: -11.22 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.73 -9.45 -45.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753572877.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.848 kcal (2) G-P(sol) polarization free energy of solvation -35.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds