Wall clock time and date at job start Wed Apr 1 2020 04:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47380 * 2 1 4 4 O 1.42904 * 109.46620 * 239.99906 * 2 1 3 5 5 C 1.35905 * 116.99906 * 88.97510 * 4 2 1 6 6 C 1.39143 * 120.47696 * 358.16509 * 5 4 2 7 7 C 1.38529 * 118.37821 * 180.02562 * 6 5 4 8 8 C 1.38257 * 119.21933 * 0.02562 * 7 6 5 9 9 N 1.31844 * 120.88835 * 359.97438 * 8 7 6 10 10 C 1.31835 * 121.77959 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.47182 * 120.00458 * 2 1 3 12 12 O 1.21273 * 120.00135 * 112.47123 * 11 2 1 13 13 N 1.34778 * 119.99588 * 292.46878 * 11 2 1 14 14 C 1.46931 * 120.62930 * 5.55538 * 13 11 2 15 15 C 1.52765 * 109.00673 * 233.58382 * 14 13 11 16 16 C 1.53045 * 109.38238 * 305.59095 * 15 14 13 17 17 C 1.53004 * 109.46007 * 181.25967 * 16 15 14 18 18 C 1.52997 * 109.46880 * 64.92988 * 17 16 15 19 19 N 1.46501 * 109.47134 * 179.97438 * 18 17 16 20 20 C 1.36931 * 120.00148 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00147 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00029 * 180.02562 * 20 19 18 23 23 N 1.31621 * 120.00133 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00022 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46920 * 90.00526 * 24 22 20 26 26 H 1.48501 * 109.46931 * 210.00384 * 24 22 20 27 27 H 1.48494 * 109.46851 * 330.00422 * 24 22 20 28 28 C 1.53041 * 109.53892 * 61.24071 * 16 15 14 29 29 C 1.46927 * 120.62850 * 185.83708 * 13 11 2 30 30 H 1.08999 * 109.46374 * 295.35306 * 1 2 3 31 31 H 1.08991 * 109.47019 * 55.34847 * 1 2 3 32 32 H 1.08996 * 109.47274 * 175.35317 * 1 2 3 33 33 H 1.08006 * 120.81186 * 0.02562 * 6 5 4 34 34 H 1.08004 * 120.39090 * 179.97438 * 7 6 5 35 35 H 1.08002 * 119.55136 * 180.02562 * 8 7 6 36 36 H 1.08000 * 119.65735 * 179.97438 * 10 9 8 37 37 H 1.08999 * 109.58883 * 353.41965 * 14 13 11 38 38 H 1.08995 * 109.58202 * 113.84740 * 14 13 11 39 39 H 1.08998 * 109.56373 * 185.55585 * 15 14 13 40 40 H 1.08997 * 109.36027 * 65.49877 * 15 14 13 41 41 H 1.08994 * 109.46193 * 301.21639 * 16 15 14 42 42 H 1.08996 * 109.47151 * 184.93515 * 17 16 15 43 43 H 1.09001 * 109.47083 * 304.93382 * 17 16 15 44 44 H 1.08996 * 109.47659 * 300.00216 * 18 17 16 45 45 H 1.09001 * 109.46940 * 60.00308 * 18 17 16 46 46 H 0.97002 * 119.99616 * 0.02562 * 19 18 17 47 47 H 0.97001 * 120.00288 * 180.02562 * 23 22 20 48 48 H 1.08998 * 109.49890 * 178.68493 * 28 16 15 49 49 H 1.09000 * 109.52242 * 58.60084 * 28 16 15 50 50 H 1.09003 * 109.58577 * 246.15461 * 29 13 11 51 51 H 1.08997 * 109.58573 * 6.43652 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.1915 0.0804 -2.2822 6 6 1.8864 1.4379 -2.2750 7 6 2.0915 2.1650 -3.4362 8 6 2.5881 1.5232 -4.5555 9 7 2.8671 0.2349 -4.5291 10 6 2.6863 -0.4925 -3.4446 11 6 2.0324 -0.7105 1.2304 12 8 2.6130 -1.7699 1.1243 13 7 1.8364 -0.1685 2.4487 14 6 1.0310 1.0504 2.6050 15 6 1.8468 2.0912 3.3698 16 6 2.3340 1.4859 4.6883 17 6 3.1249 2.5368 5.4701 18 6 2.1937 3.6834 5.8689 19 7 2.9507 4.6893 6.6180 20 6 2.3222 5.8139 7.0820 21 1 1.2683 5.9592 6.8960 22 6 3.0397 6.7673 7.7914 23 7 2.4355 7.8481 8.2378 24 14 4.8624 6.5158 8.1136 25 1 5.6482 7.1112 7.0031 26 1 5.2345 7.1740 9.3918 27 1 5.1534 5.0623 8.2022 28 6 3.2340 0.2827 4.3975 29 6 2.4293 -0.7817 3.6451 30 1 -0.3632 0.4401 0.9287 31 1 -0.3633 0.5843 -0.8453 32 1 -0.3633 -1.0242 -0.0833 33 1 1.4991 1.9132 -1.3858 34 1 1.8653 3.2207 -3.4670 35 1 2.7505 2.0850 -5.4635 36 1 2.9260 -1.5454 -3.4612 37 1 0.7686 1.4435 1.6228 38 1 0.1235 0.8196 3.1628 39 1 1.2249 2.9621 3.5771 40 1 2.7048 2.3911 2.7682 41 1 1.4765 1.1637 5.2788 42 1 3.5458 2.0819 6.3668 43 1 3.9308 2.9234 4.8463 44 1 1.7728 4.1383 4.9723 45 1 1.3878 3.2967 6.4927 46 1 3.8972 4.5587 6.7853 47 1 2.9369 8.5145 8.7332 48 1 3.5994 -0.1336 5.3362 49 1 4.0792 0.5993 3.7864 50 1 1.6381 -1.1650 4.2895 51 1 3.0872 -1.5987 3.3489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753572877.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:42 Heat of formation + Delta-G solvation = -43.272758 kcal Electronic energy + Delta-G solvation = -30348.796678 eV Core-core repulsion = 26248.073450 eV Total energy + Delta-G solvation = -4100.723228 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.10439 -41.17773 -39.52594 -38.69317 -37.04692 -35.26759 -33.86670 -33.22241 -33.04029 -31.86799 -30.95173 -30.18658 -27.04128 -25.81595 -24.86767 -24.45296 -24.20481 -23.56976 -22.41402 -21.45420 -20.23795 -19.67809 -19.56529 -18.28870 -17.83549 -17.49681 -16.97074 -16.74700 -16.59513 -16.15345 -15.87285 -15.79671 -15.39652 -15.25786 -15.08331 -14.90081 -14.82302 -14.60663 -14.45714 -14.36063 -13.94532 -13.86069 -13.48406 -13.38674 -13.33509 -12.96303 -12.88935 -12.64430 -12.54503 -12.34280 -12.28531 -12.17552 -12.05533 -11.83160 -11.70515 -11.35952 -11.22033 -10.92048 -10.88951 -10.72514 -10.60305 -9.76249 -9.49054 -9.26870 -8.02606 -5.35476 0.12503 0.20762 1.32304 1.37832 1.40840 1.42382 1.48464 2.29981 2.48414 2.77485 3.18149 3.29038 3.47784 3.53932 3.55387 3.72416 3.74643 3.77288 3.83366 3.89075 4.01385 4.10435 4.13004 4.28488 4.29698 4.35439 4.45698 4.53876 4.55457 4.62273 4.62735 4.74372 4.76291 4.81091 4.91053 4.94877 4.98674 5.02627 5.07168 5.08001 5.12207 5.20469 5.28337 5.35118 5.42900 5.52926 5.57592 5.77049 6.08283 6.22077 6.25695 6.94262 6.96071 7.09091 7.87088 8.04173 9.18786 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012808 B = 0.002069 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.526349 B =13531.933672 C =14783.267196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.063 3.937 3 H 0.122 0.878 4 O -0.303 6.303 5 C 0.068 3.932 6 C -0.169 4.169 7 C -0.121 4.121 8 C 0.047 3.953 9 N -0.473 5.473 10 C 0.053 3.947 11 C 0.515 3.485 12 O -0.571 6.571 13 N -0.599 5.599 14 C 0.095 3.905 15 C -0.134 4.134 16 C -0.076 4.076 17 C -0.114 4.114 18 C 0.152 3.848 19 N -0.764 5.764 20 C -0.233 4.233 21 H 0.059 0.941 22 C -0.068 4.068 23 N -0.984 5.984 24 Si 0.956 3.044 25 H -0.278 1.278 26 H -0.297 1.297 27 H -0.252 1.252 28 C -0.121 4.121 29 C 0.113 3.887 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.166 0.834 34 H 0.173 0.827 35 H 0.183 0.817 36 H 0.160 0.840 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.034 0.966 45 H 0.022 0.978 46 H 0.364 0.636 47 H 0.257 0.743 48 H 0.086 0.914 49 H 0.057 0.943 50 H 0.087 0.913 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.190 -17.121 -22.112 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.004 3.996 3 H 0.139 0.861 4 O -0.215 6.215 5 C 0.021 3.979 6 C -0.195 4.195 7 C -0.140 4.140 8 C -0.110 4.110 9 N -0.182 5.182 10 C -0.105 4.105 11 C 0.302 3.698 12 O -0.450 6.450 13 N -0.333 5.333 14 C -0.026 4.026 15 C -0.172 4.172 16 C -0.095 4.095 17 C -0.152 4.152 18 C 0.026 3.974 19 N -0.409 5.409 20 C -0.364 4.364 21 H 0.077 0.923 22 C -0.259 4.259 23 N -0.635 5.635 24 Si 0.783 3.217 25 H -0.204 1.204 26 H -0.224 1.224 27 H -0.177 1.177 28 C -0.159 4.159 29 C -0.008 4.008 30 H 0.128 0.872 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.183 0.817 34 H 0.190 0.810 35 H 0.200 0.800 36 H 0.177 0.823 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.052 0.948 45 H 0.040 0.960 46 H 0.197 0.803 47 H 0.066 0.934 48 H 0.104 0.896 49 H 0.076 0.924 50 H 0.105 0.895 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.726 -18.184 -22.846 29.437 hybrid contribution 0.805 0.802 1.449 1.841 sum -2.921 -17.382 -21.398 27.722 Atomic orbital electron populations 1.22531 0.90121 1.04680 1.06167 1.22438 0.97532 0.97353 0.82305 0.86077 1.86209 1.81146 1.36416 1.17716 1.20332 0.97704 0.91812 0.88070 1.22095 1.03393 0.92388 1.01655 1.22415 0.96778 1.02852 0.91978 1.23250 0.97361 0.90191 1.00198 1.67744 1.14806 1.08858 1.26828 1.22294 1.00158 1.01244 0.86781 1.20542 0.79046 0.85160 0.85029 1.90711 1.43851 1.23772 1.86627 1.48108 1.51427 1.28143 1.05615 1.22244 0.94119 0.83170 1.03088 1.21998 1.00837 0.98503 0.95902 1.21019 0.98368 0.93966 0.96142 1.21702 0.98235 0.95253 0.99993 1.20909 0.94042 0.88520 0.93893 1.42831 1.08906 1.22092 1.67113 1.19067 0.94418 0.96175 1.26745 0.92344 1.25543 1.02772 0.96598 1.01006 1.69883 1.37414 1.12045 1.44127 0.85398 0.80639 0.78578 0.77097 1.20436 1.22379 1.17694 1.21907 0.97967 0.95271 1.00791 1.21665 0.98003 0.95813 0.85356 0.87219 0.89002 0.91617 0.81686 0.80954 0.80028 0.82258 0.87102 0.88516 0.89337 0.91790 0.89789 0.91970 0.92173 0.94794 0.95991 0.80298 0.93385 0.89564 0.92423 0.89531 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 8.92 71.98 0.64 -0.96 16 2 C 0.06 0.93 1.80 29.85 0.05 0.98 16 3 H 0.12 1.19 5.32 -2.39 -0.01 1.18 16 4 O -0.30 -6.31 9.34 -73.55 -0.69 -7.00 16 5 C 0.07 1.23 6.67 22.60 0.15 1.38 16 6 C -0.17 -2.05 8.69 22.56 0.20 -1.85 16 7 C -0.12 -1.21 10.11 22.34 0.23 -0.99 16 8 C 0.05 0.63 11.18 84.70 0.95 1.58 16 9 N -0.47 -9.24 10.35 -195.44 -2.02 -11.26 16 10 C 0.05 1.05 11.14 84.81 0.94 2.00 16 11 C 0.51 10.66 7.10 87.66 0.62 11.28 16 12 O -0.57 -17.40 15.96 15.92 0.25 -17.14 16 13 N -0.60 -9.41 2.98 -819.72 -2.44 -11.85 16 14 C 0.09 0.95 5.05 86.22 0.44 1.38 16 15 C -0.13 -1.91 5.13 30.53 0.16 -1.75 16 16 C -0.08 -1.30 2.15 -10.76 -0.02 -1.32 16 17 C -0.11 -2.77 4.80 30.59 0.15 -2.63 16 18 C 0.15 5.10 6.01 86.38 0.52 5.62 16 19 N -0.76 -34.28 5.41 -343.46 -1.86 -36.14 16 20 C -0.23 -13.01 10.47 84.03 0.88 -12.12 16 21 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 22 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 23 N -0.98 -62.32 13.97 21.65 0.30 -62.02 16 24 Si 0.96 44.75 27.74 68.60 1.90 46.65 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 27 H -0.25 -10.62 6.52 99.48 0.65 -9.97 16 28 C -0.12 -1.94 5.36 30.67 0.16 -1.78 16 29 C 0.11 1.85 6.42 86.36 0.55 2.40 16 30 H 0.11 0.52 5.32 -2.39 -0.01 0.50 16 31 H 0.09 0.56 7.64 -2.39 -0.02 0.54 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.17 1.06 5.84 -2.91 -0.02 1.04 16 34 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 35 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.11 0.58 4.50 -2.39 -0.01 0.57 16 38 H 0.10 0.70 8.14 -2.39 -0.02 0.69 16 39 H 0.09 1.33 6.50 -2.39 -0.02 1.31 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.03 1.11 6.53 -2.39 -0.02 1.10 16 45 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.36 15.67 5.53 -92.71 -0.51 15.16 16 47 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 48 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.07 1.52 7.04 -2.39 -0.02 1.50 16 Total: -1.00 -80.31 399.16 2.90 -77.41 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.37 Total: 21.61 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 7.08 Total: -0.26 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -6.02 Total: -121.27 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.43 Total: -24.14 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.90 Total: 46.65 kcal Total: -80.31 2.90 -77.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753572877.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.134 kcal (2) G-P(sol) polarization free energy of solvation -80.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds