Wall clock time and date at job start Wed Apr 1 2020 04:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.46908 * 2 1 4 4 O 1.42895 * 109.46988 * 239.99641 * 2 1 3 5 5 C 1.35677 * 116.99879 * 90.00538 * 4 2 1 6 6 C 1.38925 * 119.68401 * 179.97438 * 5 4 2 7 7 C 1.38375 * 119.11206 * 179.97438 * 6 5 4 8 8 C 1.38829 * 118.48389 * 0.02562 * 7 6 5 9 9 C 1.38049 * 119.29052 * 0.24898 * 8 7 6 10 10 N 1.31961 * 120.83276 * 359.45665 * 9 8 7 11 11 C 1.50704 * 109.46881 * 120.00106 * 2 1 3 12 12 O 1.21276 * 120.00528 * 107.79548 * 11 2 1 13 13 N 1.34784 * 119.99726 * 287.79418 * 11 2 1 14 14 C 1.46927 * 120.62889 * 4.30608 * 13 11 2 15 15 C 1.52761 * 109.00498 * 233.58279 * 14 13 11 16 16 C 1.53037 * 109.38520 * 305.58859 * 15 14 13 17 17 C 1.52995 * 109.45141 * 181.25500 * 16 15 14 18 18 C 1.53001 * 109.47126 * 64.94014 * 17 16 15 19 19 N 1.46499 * 109.46963 * 180.02562 * 18 17 16 20 20 C 1.36939 * 119.99712 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00211 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00103 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99647 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00384 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46823 * 60.00065 * 24 22 20 26 26 H 1.48496 * 109.47315 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47348 * 300.00572 * 24 22 20 28 28 C 1.53045 * 109.53604 * 61.24089 * 16 15 14 29 29 C 1.46922 * 120.62895 * 184.58648 * 13 11 2 30 30 H 1.09004 * 109.47547 * 174.15666 * 1 2 3 31 31 H 1.09003 * 109.47511 * 294.15836 * 1 2 3 32 32 H 1.09003 * 109.47167 * 54.16155 * 1 2 3 33 33 H 1.08000 * 120.44107 * 359.97438 * 6 5 4 34 34 H 1.08002 * 120.76140 * 180.02562 * 7 6 5 35 35 H 1.08002 * 120.35882 * 179.97438 * 8 7 6 36 36 H 1.08002 * 119.58133 * 179.72214 * 9 8 7 37 37 H 1.09002 * 109.58770 * 353.41835 * 14 13 11 38 38 H 1.09002 * 109.58735 * 113.84394 * 14 13 11 39 39 H 1.09002 * 109.56062 * 185.55431 * 15 14 13 40 40 H 1.09002 * 109.35940 * 65.49937 * 15 14 13 41 41 H 1.09000 * 109.45991 * 301.22522 * 16 15 14 42 42 H 1.09005 * 109.47197 * 184.93947 * 17 16 15 43 43 H 1.09001 * 109.47156 * 304.94176 * 17 16 15 44 44 H 1.09005 * 109.47028 * 300.00037 * 18 17 16 45 45 H 1.08994 * 109.47282 * 59.99824 * 18 17 16 46 46 H 0.96997 * 120.00484 * 0.02562 * 19 18 17 47 47 H 0.96996 * 119.99512 * 179.97438 * 23 22 20 48 48 H 1.09005 * 109.49724 * 178.68443 * 28 16 15 49 49 H 1.09000 * 109.50001 * 58.58825 * 28 16 15 50 50 H 1.09006 * 109.58139 * 246.15550 * 29 13 11 51 51 H 1.09002 * 109.58515 * 6.43614 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2117 0.0828 -2.2741 6 6 2.6747 -0.5150 -3.4395 7 6 2.8796 0.2677 -4.5621 8 6 2.6132 1.6277 -4.4787 9 6 2.1604 2.1553 -3.2861 10 7 1.9692 1.3823 -2.2338 11 6 2.0323 -0.7105 1.2305 12 8 2.5370 -1.8089 1.1330 13 7 1.9205 -0.1251 2.4394 14 6 1.2278 1.1623 2.5866 15 6 2.1527 2.1461 3.3008 16 6 2.6259 1.5321 4.6203 17 6 3.5273 2.5287 5.3517 18 6 2.7105 3.7606 5.7467 19 7 3.5738 4.7152 6.4465 20 6 3.0588 5.9011 6.8975 21 1 2.0163 6.1330 6.7370 22 6 3.8767 6.8054 7.5611 23 7 5.1474 6.5231 7.7563 24 14 3.1743 8.4235 8.1757 25 1 2.0803 8.1526 9.1428 26 1 4.2445 9.2049 8.8460 27 1 2.6394 9.1989 7.0277 28 6 3.4100 0.2490 4.3356 29 6 2.4945 -0.7591 3.6340 30 1 -0.3634 -1.0223 -0.1046 31 1 -0.3634 0.4206 0.9377 32 1 -0.3634 0.6017 -0.8331 33 1 2.8722 -1.5763 -3.4689 34 1 3.2385 -0.1693 -5.4822 35 1 2.7629 2.2668 -5.3363 36 1 1.9560 3.2134 -3.2146 37 1 0.9705 1.5534 1.6023 38 1 0.3210 1.0240 3.1756 39 1 1.6143 3.0722 3.5028 40 1 3.0146 2.3565 2.6677 41 1 1.7620 1.2991 5.2429 42 1 3.9348 2.0604 6.2477 43 1 4.3440 2.8294 4.6954 44 1 2.3030 4.2290 4.8507 45 1 1.8938 3.4600 6.4029 46 1 4.5104 4.5075 6.5897 47 1 5.7189 7.1551 8.2196 48 1 3.7667 -0.1752 5.2742 49 1 4.2601 0.4772 3.6927 50 1 1.6931 -1.0572 4.3102 51 1 3.0707 -1.6367 3.3408 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753577183.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:35 Heat of formation + Delta-G solvation = -28.241052 kcal Electronic energy + Delta-G solvation = -30285.039756 eV Core-core repulsion = 26184.968352 eV Total energy + Delta-G solvation = -4100.071404 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.23581 -40.37218 -38.54108 -37.58956 -35.37641 -33.80664 -32.90736 -32.65902 -31.18049 -30.99129 -30.24639 -28.43969 -25.78788 -24.73514 -23.95978 -23.59610 -23.26493 -22.55403 -21.09577 -20.34649 -19.34267 -18.91311 -17.52085 -17.07878 -16.90706 -16.33458 -16.14674 -16.00107 -15.26804 -14.94664 -14.78123 -14.69802 -14.44533 -14.18172 -14.00973 -13.74979 -13.60389 -13.52035 -13.33490 -13.13456 -12.83460 -12.68701 -12.61904 -12.43880 -12.28946 -11.99051 -11.52771 -11.33524 -11.27379 -11.15473 -11.00132 -10.77231 -10.61724 -10.34633 -10.32346 -10.22220 -10.01841 -9.94880 -9.82007 -9.66271 -8.89863 -8.85638 -8.82341 -6.90123 -5.75284 -3.03840 0.77053 0.87535 2.15133 2.35598 3.07022 3.40142 3.44166 3.48221 3.49643 3.87918 4.08068 4.46906 4.53363 4.57646 4.58074 4.65000 4.68592 4.78051 4.78847 4.82093 4.84040 4.94882 5.12937 5.19270 5.23433 5.32080 5.32739 5.38038 5.55269 5.56159 5.59303 5.66039 5.70958 5.71733 5.80254 5.81967 5.83117 6.01031 6.01599 6.04803 6.16318 6.33862 6.36349 6.42480 6.45717 6.83762 6.87747 6.92911 7.11932 7.45268 7.69724 7.89435 8.44029 9.54524 10.14083 10.48107 11.47689 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012274 B = 0.002036 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.693275 B =13747.061667 C =15246.833164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.073 3.927 3 H 0.115 0.885 4 O -0.277 6.277 5 C 0.323 3.677 6 C -0.189 4.189 7 C -0.040 4.040 8 C -0.214 4.214 9 C 0.142 3.858 10 N -0.542 5.542 11 C 0.519 3.481 12 O -0.526 6.526 13 N -0.604 5.604 14 C 0.098 3.902 15 C -0.134 4.134 16 C -0.082 4.082 17 C -0.121 4.121 18 C 0.153 3.847 19 N -0.735 5.735 20 C -0.239 4.239 21 H 0.069 0.931 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.129 4.129 29 C 0.114 3.886 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.161 0.839 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.019 0.981 45 H 0.016 0.984 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.070 0.930 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.869 -15.510 -23.776 29.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.013 3.987 3 H 0.133 0.867 4 O -0.183 6.183 5 C 0.144 3.856 6 C -0.210 4.210 7 C -0.066 4.066 8 C -0.234 4.234 9 C -0.014 4.014 10 N -0.266 5.266 11 C 0.305 3.695 12 O -0.401 6.401 13 N -0.339 5.339 14 C -0.024 4.024 15 C -0.172 4.172 16 C -0.101 4.101 17 C -0.159 4.159 18 C 0.025 3.975 19 N -0.379 5.379 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.212 4.212 23 N -0.583 5.583 24 Si 0.739 3.261 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.168 4.168 29 C -0.008 4.008 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.179 0.821 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.037 0.963 45 H 0.034 0.966 46 H 0.216 0.784 47 H 0.065 0.935 48 H 0.096 0.904 49 H 0.085 0.915 50 H 0.088 0.912 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.978 -15.911 -22.949 29.333 hybrid contribution 0.242 0.858 -0.228 0.920 sum -8.736 -15.054 -23.177 28.985 Atomic orbital electron populations 1.22278 0.92286 1.03931 1.04134 1.22086 0.95945 0.98006 0.82655 0.86714 1.86379 1.79865 1.34436 1.17636 1.19905 0.91236 0.87470 0.86998 1.21096 1.06201 1.02276 0.91400 1.21435 0.94007 0.93470 0.97660 1.22012 1.05165 0.96218 1.00028 1.22467 0.92354 0.99294 0.87247 1.67261 1.21868 1.04657 1.32767 1.20179 0.79160 0.86057 0.84073 1.90712 1.43994 1.19682 1.85762 1.48028 1.56381 1.22592 1.06910 1.21965 0.95624 0.82932 1.01876 1.22000 0.99949 0.98491 0.96735 1.21082 0.98649 0.94469 0.95905 1.21760 0.98411 0.95925 0.99782 1.20697 0.93218 0.88951 0.94598 1.42386 1.09677 1.17875 1.67946 1.19191 0.94473 0.94080 1.29295 0.91283 1.24761 0.95781 0.98974 1.01678 1.69656 1.04444 1.36716 1.47500 0.86256 0.77638 0.83669 0.78555 1.21286 1.21690 1.21277 1.22000 0.98379 0.95566 1.00821 1.21667 0.97289 0.96469 0.85386 0.91085 0.89897 0.90583 0.83976 0.84088 0.84450 0.82148 0.89535 0.90636 0.89417 0.91381 0.90880 0.91876 0.92041 0.96308 0.96640 0.78356 0.93485 0.90356 0.91483 0.91216 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 9.10 37.16 0.34 -1.08 16 2 C 0.07 0.80 2.05 -27.88 -0.06 0.74 16 3 H 0.12 1.21 6.07 -51.93 -0.32 0.90 16 4 O -0.28 -3.47 9.32 -38.34 -0.36 -3.83 16 5 C 0.32 3.51 7.45 -17.12 -0.13 3.39 16 6 C -0.19 -1.64 10.04 -39.28 -0.39 -2.04 16 7 C -0.04 -0.26 10.17 -39.31 -0.40 -0.66 16 8 C -0.21 -1.30 10.11 -39.43 -0.40 -1.70 16 9 C 0.14 1.07 11.18 -17.57 -0.20 0.87 16 10 N -0.54 -5.47 8.65 -13.33 -0.12 -5.59 16 11 C 0.52 6.65 7.04 -10.98 -0.08 6.57 16 12 O -0.53 -8.65 15.98 -14.05 -0.22 -8.87 16 13 N -0.60 -6.55 2.98 -173.03 -0.52 -7.07 16 14 C 0.10 0.88 5.15 -3.93 -0.02 0.86 16 15 C -0.13 -1.44 5.13 -26.83 -0.14 -1.58 16 16 C -0.08 -0.97 2.15 -90.58 -0.19 -1.16 16 17 C -0.12 -1.88 4.80 -26.73 -0.13 -2.01 16 18 C 0.15 3.00 6.02 -4.04 -0.02 2.97 16 19 N -0.73 -18.82 5.60 -59.91 -0.34 -19.16 16 20 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 23 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 24 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 C -0.13 -1.40 5.36 -26.61 -0.14 -1.55 16 29 C 0.11 1.20 6.42 -3.72 -0.02 1.18 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.57 5.98 -51.93 -0.31 0.26 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 35 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.09 0.66 4.76 -51.93 -0.25 0.42 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.98 6.50 -51.93 -0.34 0.64 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.02 0.37 6.53 -51.93 -0.34 0.03 16 45 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.38 10.34 7.67 -40.82 -0.31 10.03 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 51 H 0.09 1.06 7.03 -51.93 -0.37 0.70 16 LS Contribution 406.59 15.07 6.13 6.13 Total: -1.00 -35.16 406.59 -10.07 -45.23 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -8.12 Total: 6.19 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -2.23 Total: -2.66 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.24 Total: -59.65 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.58 Total: -12.70 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.16 -10.07 -45.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753577183.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.988 kcal (2) G-P(sol) polarization free energy of solvation -35.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds