Wall clock time and date at job start Wed Apr 1 2020 04:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.46908 * 2 1 4 4 O 1.42895 * 109.46988 * 239.99641 * 2 1 3 5 5 C 1.35677 * 116.99879 * 90.00538 * 4 2 1 6 6 C 1.38925 * 119.68401 * 179.97438 * 5 4 2 7 7 C 1.38375 * 119.11206 * 179.97438 * 6 5 4 8 8 C 1.38829 * 118.48389 * 0.02562 * 7 6 5 9 9 C 1.38049 * 119.29052 * 0.24898 * 8 7 6 10 10 N 1.31961 * 120.83276 * 359.45665 * 9 8 7 11 11 C 1.50704 * 109.46881 * 120.00106 * 2 1 3 12 12 O 1.21276 * 120.00528 * 107.79548 * 11 2 1 13 13 N 1.34784 * 119.99726 * 287.79418 * 11 2 1 14 14 C 1.46927 * 120.62889 * 4.30608 * 13 11 2 15 15 C 1.52761 * 109.00498 * 233.58279 * 14 13 11 16 16 C 1.53037 * 109.38520 * 305.58859 * 15 14 13 17 17 C 1.52995 * 109.45141 * 181.25500 * 16 15 14 18 18 C 1.53001 * 109.47126 * 64.94014 * 17 16 15 19 19 N 1.46499 * 109.46963 * 180.02562 * 18 17 16 20 20 C 1.36939 * 119.99712 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00211 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00103 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99647 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00384 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46823 * 60.00065 * 24 22 20 26 26 H 1.48496 * 109.47315 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47348 * 300.00572 * 24 22 20 28 28 C 1.53045 * 109.53604 * 61.24089 * 16 15 14 29 29 C 1.46922 * 120.62895 * 184.58648 * 13 11 2 30 30 H 1.09004 * 109.47547 * 174.15666 * 1 2 3 31 31 H 1.09003 * 109.47511 * 294.15836 * 1 2 3 32 32 H 1.09003 * 109.47167 * 54.16155 * 1 2 3 33 33 H 1.08000 * 120.44107 * 359.97438 * 6 5 4 34 34 H 1.08002 * 120.76140 * 180.02562 * 7 6 5 35 35 H 1.08002 * 120.35882 * 179.97438 * 8 7 6 36 36 H 1.08002 * 119.58133 * 179.72214 * 9 8 7 37 37 H 1.09002 * 109.58770 * 353.41835 * 14 13 11 38 38 H 1.09002 * 109.58735 * 113.84394 * 14 13 11 39 39 H 1.09002 * 109.56062 * 185.55431 * 15 14 13 40 40 H 1.09002 * 109.35940 * 65.49937 * 15 14 13 41 41 H 1.09000 * 109.45991 * 301.22522 * 16 15 14 42 42 H 1.09005 * 109.47197 * 184.93947 * 17 16 15 43 43 H 1.09001 * 109.47156 * 304.94176 * 17 16 15 44 44 H 1.09005 * 109.47028 * 300.00037 * 18 17 16 45 45 H 1.08994 * 109.47282 * 59.99824 * 18 17 16 46 46 H 0.96997 * 120.00484 * 0.02562 * 19 18 17 47 47 H 0.96996 * 119.99512 * 179.97438 * 23 22 20 48 48 H 1.09005 * 109.49724 * 178.68443 * 28 16 15 49 49 H 1.09000 * 109.50001 * 58.58825 * 28 16 15 50 50 H 1.09006 * 109.58139 * 246.15550 * 29 13 11 51 51 H 1.09002 * 109.58515 * 6.43614 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2117 0.0828 -2.2741 6 6 2.6747 -0.5150 -3.4395 7 6 2.8796 0.2677 -4.5621 8 6 2.6132 1.6277 -4.4787 9 6 2.1604 2.1553 -3.2861 10 7 1.9692 1.3823 -2.2338 11 6 2.0323 -0.7105 1.2305 12 8 2.5370 -1.8089 1.1330 13 7 1.9205 -0.1251 2.4394 14 6 1.2278 1.1623 2.5866 15 6 2.1527 2.1461 3.3008 16 6 2.6259 1.5321 4.6203 17 6 3.5273 2.5287 5.3517 18 6 2.7105 3.7606 5.7467 19 7 3.5738 4.7152 6.4465 20 6 3.0588 5.9011 6.8975 21 1 2.0163 6.1330 6.7370 22 6 3.8767 6.8054 7.5611 23 7 5.1474 6.5231 7.7563 24 14 3.1743 8.4235 8.1757 25 1 2.0803 8.1526 9.1428 26 1 4.2445 9.2049 8.8460 27 1 2.6394 9.1989 7.0277 28 6 3.4100 0.2490 4.3356 29 6 2.4945 -0.7591 3.6340 30 1 -0.3634 -1.0223 -0.1046 31 1 -0.3634 0.4206 0.9377 32 1 -0.3634 0.6017 -0.8331 33 1 2.8722 -1.5763 -3.4689 34 1 3.2385 -0.1693 -5.4822 35 1 2.7629 2.2668 -5.3363 36 1 1.9560 3.2134 -3.2146 37 1 0.9705 1.5534 1.6023 38 1 0.3210 1.0240 3.1756 39 1 1.6143 3.0722 3.5028 40 1 3.0146 2.3565 2.6677 41 1 1.7620 1.2991 5.2429 42 1 3.9348 2.0604 6.2477 43 1 4.3440 2.8294 4.6954 44 1 2.3030 4.2290 4.8507 45 1 1.8938 3.4600 6.4029 46 1 4.5104 4.5075 6.5897 47 1 5.7189 7.1551 8.2196 48 1 3.7667 -0.1752 5.2742 49 1 4.2601 0.4772 3.6927 50 1 1.6931 -1.0572 4.3102 51 1 3.0707 -1.6367 3.3408 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753577183.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:34 Heat of formation + Delta-G solvation = -50.737023 kcal Electronic energy + Delta-G solvation = -30286.015254 eV Core-core repulsion = 26184.968352 eV Total energy + Delta-G solvation = -4101.046902 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.00483 -41.16819 -39.39369 -38.53883 -36.90844 -35.21596 -33.77266 -33.41216 -32.74846 -31.89029 -30.91767 -29.89027 -26.96188 -25.85125 -24.85392 -24.43350 -24.26948 -23.66592 -22.35191 -21.42327 -20.23490 -19.64691 -19.11281 -18.31783 -17.74964 -17.06661 -16.85881 -16.74171 -16.64931 -16.18488 -15.81591 -15.54060 -15.44376 -15.34419 -15.31121 -14.89359 -14.76794 -14.44752 -14.24257 -14.06192 -13.99853 -13.83624 -13.43553 -13.24970 -13.05027 -12.86426 -12.81280 -12.75554 -12.52510 -12.30053 -12.28427 -12.16272 -12.13412 -11.94947 -11.63366 -11.37425 -11.20438 -10.92693 -10.86750 -10.80467 -10.59071 -9.76931 -9.51355 -8.97983 -7.94360 -5.23364 0.18943 0.31410 1.29318 1.46468 1.47683 1.51200 1.57337 2.29428 2.57092 2.81294 3.23239 3.28496 3.39143 3.67441 3.73689 3.82616 3.85365 3.92788 4.04229 4.07704 4.10901 4.19498 4.21667 4.31622 4.34793 4.39129 4.46773 4.56332 4.60657 4.61746 4.67006 4.76038 4.79533 4.81374 4.89823 4.94780 5.01220 5.05803 5.07205 5.09232 5.19788 5.28459 5.29745 5.37369 5.48836 5.50448 5.54203 5.57832 6.11681 6.25791 6.28305 6.83158 6.95835 7.33624 8.11872 8.33343 9.29318 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012274 B = 0.002036 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.693275 B =13747.061667 C =15246.833164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.076 3.924 3 H 0.116 0.884 4 O -0.304 6.304 5 C 0.292 3.708 6 C -0.205 4.205 7 C -0.037 4.037 8 C -0.204 4.204 9 C 0.126 3.874 10 N -0.560 5.560 11 C 0.514 3.486 12 O -0.571 6.571 13 N -0.600 5.600 14 C 0.100 3.900 15 C -0.131 4.131 16 C -0.073 4.073 17 C -0.109 4.109 18 C 0.151 3.849 19 N -0.752 5.752 20 C -0.245 4.245 21 H 0.078 0.922 22 C -0.081 4.081 23 N -0.972 5.972 24 Si 0.976 3.024 25 H -0.277 1.277 26 H -0.297 1.297 27 H -0.276 1.276 28 C -0.122 4.122 29 C 0.114 3.886 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.144 0.856 34 H 0.173 0.827 35 H 0.170 0.830 36 H 0.184 0.816 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.049 0.951 44 H 0.028 0.972 45 H 0.021 0.979 46 H 0.371 0.629 47 H 0.251 0.749 48 H 0.087 0.913 49 H 0.052 0.948 50 H 0.091 0.909 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.754 -14.702 -25.134 31.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 H 0.134 0.866 4 O -0.211 6.211 5 C 0.114 3.886 6 C -0.225 4.225 7 C -0.062 4.062 8 C -0.224 4.224 9 C -0.029 4.029 10 N -0.284 5.284 11 C 0.302 3.698 12 O -0.450 6.450 13 N -0.333 5.333 14 C -0.021 4.021 15 C -0.169 4.169 16 C -0.092 4.092 17 C -0.147 4.147 18 C 0.025 3.975 19 N -0.394 5.394 20 C -0.377 4.377 21 H 0.096 0.904 22 C -0.273 4.273 23 N -0.623 5.623 24 Si 0.805 3.195 25 H -0.203 1.203 26 H -0.223 1.223 27 H -0.202 1.202 28 C -0.160 4.160 29 C -0.007 4.007 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.162 0.838 34 H 0.191 0.809 35 H 0.187 0.813 36 H 0.201 0.799 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.039 0.961 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.106 0.894 49 H 0.071 0.929 50 H 0.109 0.891 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.915 -15.097 -24.324 30.638 hybrid contribution 0.843 0.615 0.103 1.049 sum -10.072 -14.483 -24.220 29.964 Atomic orbital electron populations 1.22243 0.90422 1.03763 1.05304 1.22114 0.97255 0.97340 0.81661 0.86630 1.86334 1.80648 1.35651 1.18440 1.20175 0.93190 0.88088 0.87147 1.21347 1.06574 1.02881 0.91707 1.21860 0.92855 0.93587 0.97906 1.22413 1.03133 0.96458 1.00398 1.23012 0.92325 1.00233 0.87329 1.67215 1.22519 1.04540 1.34096 1.20614 0.78481 0.85647 0.85057 1.90681 1.46176 1.21730 1.86460 1.48127 1.55766 1.22951 1.06466 1.22113 0.95605 0.81415 1.02990 1.21952 0.99907 0.98979 0.96077 1.21010 0.98319 0.93676 0.96203 1.21628 0.98220 0.95140 0.99678 1.20900 0.93045 0.89330 0.94220 1.42674 1.09849 1.18397 1.68471 1.19643 0.94858 0.94888 1.28297 0.90417 1.25641 0.96219 1.02722 1.02727 1.69826 1.05794 1.37834 1.48870 0.85172 0.76830 0.79361 0.78178 1.20257 1.22286 1.20180 1.21913 0.97842 0.95239 1.01017 1.21683 0.97755 0.95787 0.85519 0.91772 0.88005 0.90113 0.83782 0.80940 0.81272 0.79891 0.88048 0.88167 0.89334 0.92675 0.89441 0.92476 0.93239 0.95417 0.96129 0.79739 0.94055 0.89424 0.92944 0.89099 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.10 71.98 0.65 -1.89 16 2 C 0.08 1.66 2.05 29.85 0.06 1.73 16 3 H 0.12 2.44 6.07 -2.39 -0.01 2.42 16 4 O -0.30 -7.93 9.32 -71.20 -0.66 -8.59 16 5 C 0.29 6.48 7.45 84.80 0.63 7.11 16 6 C -0.20 -3.52 10.04 22.47 0.23 -3.30 16 7 C -0.04 -0.40 10.17 22.44 0.23 -0.17 16 8 C -0.20 -1.97 10.11 22.37 0.23 -1.74 16 9 C 0.13 1.70 11.18 84.63 0.95 2.64 16 10 N -0.56 -11.08 8.65 -308.95 -2.67 -13.75 16 11 C 0.51 13.29 7.04 87.66 0.62 13.91 16 12 O -0.57 -19.53 15.98 15.73 0.25 -19.28 16 13 N -0.60 -12.41 2.98 -819.73 -2.44 -14.85 16 14 C 0.10 1.56 5.15 86.22 0.44 2.01 16 15 C -0.13 -2.61 5.13 30.53 0.16 -2.46 16 16 C -0.07 -1.61 2.15 -10.77 -0.02 -1.63 16 17 C -0.11 -3.31 4.80 30.59 0.15 -3.17 16 18 C 0.15 5.77 6.02 86.38 0.52 6.29 16 19 N -0.75 -38.55 5.60 -343.45 -1.92 -40.47 16 20 C -0.25 -13.74 9.99 84.03 0.84 -12.90 16 21 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 22 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 23 N -0.97 -60.26 13.06 21.65 0.28 -59.97 16 24 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 26 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 28 C -0.12 -2.53 5.36 30.67 0.16 -2.37 16 29 C 0.11 2.30 6.42 86.36 0.55 2.86 16 30 H 0.06 1.11 8.14 -2.38 -0.02 1.10 16 31 H 0.10 1.17 5.98 -2.39 -0.01 1.16 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 35 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 36 H 0.18 1.42 8.06 -2.91 -0.02 1.39 16 37 H 0.10 1.32 4.76 -2.39 -0.01 1.31 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.78 6.50 -2.39 -0.02 1.77 16 40 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.03 1.03 6.53 -2.38 -0.02 1.02 16 45 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.37 20.44 7.67 -92.71 -0.71 19.72 16 47 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 48 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 49 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 51 H 0.08 1.81 7.03 -2.39 -0.02 1.79 16 Total: -1.00 -77.82 406.59 1.94 -75.88 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.22 Total: 30.26 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 6.86 Total: 2.68 kcal Atomic # 7 Polarization: -122.29 SS G_CDS: -6.75 Total: -129.05 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.41 Total: -27.87 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -77.82 1.94 -75.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753577183.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.143 kcal (2) G-P(sol) polarization free energy of solvation -77.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds