Wall clock time and date at job start Wed Apr 1 2020 05:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.08998 * 109.47564 * 2 1 4 4 O 1.42903 * 109.47132 * 240.00307 * 2 1 3 5 5 C 1.35669 * 117.00485 * 89.99624 * 4 2 1 6 6 C 1.38922 * 119.68786 * 179.97438 * 5 4 2 7 7 C 1.38379 * 119.11159 * 179.74689 * 6 5 4 8 8 C 1.38834 * 118.48249 * 0.53981 * 7 6 5 9 9 C 1.38044 * 119.29172 * 359.46277 * 8 7 6 10 10 N 1.31967 * 120.83476 * 0.27068 * 9 8 7 11 11 C 1.50700 * 109.47322 * 120.00359 * 2 1 3 12 12 O 1.21275 * 120.00119 * 120.00268 * 11 2 1 13 13 N 1.34778 * 119.99467 * 299.99460 * 11 2 1 14 14 C 1.46506 * 119.99676 * 180.02562 * 13 11 2 15 15 C 1.52998 * 109.47115 * 180.02562 * 14 13 11 16 16 C 1.52993 * 109.47394 * 180.02562 * 15 14 13 17 17 C 1.53045 * 109.46022 * 295.02973 * 16 15 14 18 18 C 1.53192 * 109.31371 * 178.59876 * 17 16 15 19 19 N 1.46924 * 108.76500 * 54.65147 * 18 17 16 20 20 C 1.36945 * 120.62758 * 126.40552 * 19 18 17 21 21 H 1.07999 * 119.99971 * 331.82580 * 20 19 18 22 22 C 1.38813 * 119.99729 * 151.82751 * 20 19 18 23 23 N 1.31621 * 119.99941 * 343.07628 * 22 20 19 24 24 Si 1.86796 * 119.99739 * 163.08011 * 22 20 19 25 25 H 1.48506 * 109.47270 * 59.99824 * 24 22 20 26 26 H 1.48506 * 109.47154 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47497 * 299.99698 * 24 22 20 28 28 C 1.46921 * 118.74292 * 306.38559 * 19 18 17 29 29 C 1.53043 * 109.46412 * 174.97493 * 16 15 14 30 30 H 1.09005 * 109.46945 * 299.99923 * 1 2 3 31 31 H 1.08998 * 109.47793 * 59.99986 * 1 2 3 32 32 H 1.08998 * 109.47564 * 180.02562 * 1 2 3 33 33 H 1.07996 * 120.44408 * 0.02562 * 6 5 4 34 34 H 1.07998 * 120.76214 * 180.29540 * 7 6 5 35 35 H 1.08003 * 120.35052 * 179.73293 * 8 7 6 36 36 H 1.07994 * 119.58201 * 180.25532 * 9 8 7 37 37 H 0.96997 * 120.00266 * 0.02562 * 13 11 2 38 38 H 1.09003 * 109.47324 * 300.00533 * 14 13 11 39 39 H 1.09003 * 109.47046 * 60.00427 * 14 13 11 40 40 H 1.09003 * 109.47292 * 300.00347 * 15 14 13 41 41 H 1.09003 * 109.46983 * 60.00182 * 15 14 13 42 42 H 1.09004 * 109.45922 * 54.99962 * 16 15 14 43 43 H 1.08993 * 109.49873 * 298.56226 * 17 16 15 44 44 H 1.08999 * 109.49718 * 58.66307 * 17 16 15 45 45 H 1.09002 * 109.59602 * 294.86909 * 18 17 16 46 46 H 1.08998 * 109.70266 * 174.50477 * 18 17 16 47 47 H 0.97003 * 119.99588 * 180.02562 * 23 22 20 48 48 H 1.09005 * 109.58888 * 293.82172 * 28 19 18 49 49 H 1.08998 * 109.70648 * 173.46139 * 28 19 18 50 50 H 1.09004 * 109.49302 * 301.33396 * 29 16 15 51 51 H 1.08996 * 109.49784 * 61.43389 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 -1.1668 5 6 2.2115 0.0829 -2.2742 6 6 2.6746 -0.5148 -3.4396 7 6 2.8748 0.2671 -4.5636 8 6 2.6141 1.6281 -4.4783 9 6 2.1559 2.1547 -3.2874 10 7 1.9693 1.3824 -2.2337 11 6 2.0323 -0.7105 1.2304 12 8 2.7296 -1.6965 1.1191 13 7 1.7067 -0.2499 2.4545 14 6 2.1956 -0.9403 3.6507 15 6 1.6850 -0.2195 4.9000 16 6 2.1960 -0.9399 6.1491 17 6 1.5877 -2.3428 6.2133 18 6 2.1286 -3.0737 7.4462 19 7 1.8710 -2.2496 8.6350 20 6 1.2123 -2.7715 9.7163 21 1 0.5003 -3.5719 9.5801 22 6 1.4599 -2.2714 10.9873 23 7 2.5379 -1.5505 11.2125 24 14 0.2632 -2.6219 12.3782 25 1 0.1590 -4.0889 12.5837 26 1 0.7525 -1.9813 13.6254 27 1 -1.0729 -2.0745 12.0314 28 6 2.3339 -0.8553 8.6419 29 6 1.7910 -0.1493 7.3954 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 2.8714 -1.5763 -3.4694 34 1 3.2295 -0.1705 -5.4850 35 1 2.7641 2.2673 -5.3359 36 1 1.9477 3.2120 -3.2170 37 1 1.1488 0.5385 2.5435 38 1 1.8327 -1.9681 3.6509 39 1 3.2856 -0.9398 3.6505 40 1 2.0476 0.8085 4.9000 41 1 0.5950 -0.2203 4.8999 42 1 3.2825 -1.0169 6.1051 43 1 0.5027 -2.2661 6.2826 44 1 1.8571 -2.8976 5.3145 45 1 3.2016 -3.2313 7.3363 46 1 1.6270 -4.0356 7.5526 47 1 2.7110 -1.2015 12.1008 48 1 3.4237 -0.8319 8.6295 49 1 1.9678 -0.3508 9.5360 50 1 2.2051 0.8574 7.3380 51 1 0.7040 -0.0934 7.4534 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753600031.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:00 Heat of formation + Delta-G solvation = -26.934986 kcal Electronic energy + Delta-G solvation = -29592.616475 eV Core-core repulsion = 25492.601706 eV Total energy + Delta-G solvation = -4100.014769 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.18193 -39.96536 -38.28885 -37.79261 -35.42437 -33.72476 -32.95371 -32.52285 -31.18199 -30.42953 -29.89404 -28.45454 -25.65889 -24.86695 -24.01555 -23.41735 -22.79780 -21.91145 -20.92233 -20.34085 -19.05766 -18.94672 -17.86577 -16.82300 -16.72589 -16.38665 -16.13106 -15.93476 -15.43123 -14.97091 -14.80038 -14.54649 -14.29530 -13.85823 -13.74234 -13.58628 -13.49401 -13.46751 -13.27177 -12.82684 -12.76182 -12.54156 -12.41760 -12.20379 -12.17168 -11.57697 -11.53827 -11.31481 -11.19500 -10.86403 -10.67936 -10.45043 -10.40265 -10.19811 -10.13896 -10.08334 -9.94230 -9.81677 -9.44414 -9.37458 -9.16051 -8.93689 -8.42886 -6.61597 -5.75181 -3.17295 0.70929 0.81459 2.20470 2.39672 3.22001 3.34583 3.40200 3.45671 3.47077 3.81158 4.33401 4.41187 4.51120 4.52717 4.58722 4.64285 4.75876 4.77372 4.92753 5.05425 5.16771 5.26670 5.28935 5.30266 5.41048 5.48235 5.50416 5.61960 5.66703 5.74588 5.76122 5.80736 5.96354 6.02479 6.04662 6.13387 6.23626 6.32268 6.40825 6.58842 6.67250 6.74276 6.79477 6.86600 6.90021 7.05938 7.25445 7.39163 7.42025 7.70143 7.82666 7.98645 8.49515 9.25824 9.89624 10.46883 11.33246 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.037494 B = 0.001505 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.613428 B =18601.483815 C =18745.595062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.073 3.927 3 H 0.115 0.885 4 O -0.276 6.276 5 C 0.324 3.676 6 C -0.188 4.188 7 C -0.040 4.040 8 C -0.215 4.215 9 C 0.140 3.860 10 N -0.543 5.543 11 C 0.512 3.488 12 O -0.520 6.520 13 N -0.723 5.723 14 C 0.118 3.882 15 C -0.125 4.125 16 C -0.075 4.075 17 C -0.130 4.130 18 C 0.144 3.856 19 N -0.592 5.592 20 C -0.252 4.252 21 H 0.064 0.936 22 C 0.001 3.999 23 N -0.904 5.904 24 Si 0.902 3.098 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.284 1.284 28 C 0.171 3.829 29 C -0.134 4.134 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.160 0.840 37 H 0.400 0.600 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.016 0.984 46 H 0.052 0.948 47 H 0.253 0.747 48 H 0.016 0.984 49 H 0.086 0.914 50 H 0.047 0.953 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.435 9.795 -31.355 32.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.013 3.987 3 H 0.132 0.868 4 O -0.181 6.181 5 C 0.145 3.855 6 C -0.209 4.209 7 C -0.065 4.065 8 C -0.235 4.235 9 C -0.016 4.016 10 N -0.268 5.268 11 C 0.297 3.703 12 O -0.395 6.395 13 N -0.376 5.376 14 C -0.005 4.005 15 C -0.163 4.163 16 C -0.094 4.094 17 C -0.169 4.169 18 C 0.018 3.982 19 N -0.315 5.315 20 C -0.381 4.381 21 H 0.082 0.918 22 C -0.197 4.197 23 N -0.548 5.548 24 Si 0.732 3.268 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.211 1.211 28 C 0.045 3.955 29 C -0.173 4.173 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.177 0.823 37 H 0.235 0.765 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.034 0.966 49 H 0.104 0.896 50 H 0.065 0.935 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.123 9.175 -30.410 31.834 hybrid contribution -0.572 0.125 0.098 0.594 sum -2.695 9.299 -30.312 31.820 Atomic orbital electron populations 1.22171 0.92309 1.03824 1.03853 1.22095 0.95797 0.98021 0.82820 0.86756 1.86393 1.79789 1.34348 1.17588 1.19907 0.91116 0.87406 0.87050 1.21123 1.05989 1.02402 0.91351 1.21447 0.93966 0.93444 0.97677 1.22001 1.05249 0.96226 1.00026 1.22431 0.92577 0.99218 0.87329 1.67260 1.22062 1.04722 1.32707 1.20192 0.80873 0.84966 0.84308 1.90754 1.36796 1.25475 1.86496 1.45967 1.53921 1.32355 1.05395 1.21594 0.99503 0.96898 0.82489 1.21912 1.01246 0.99446 0.93668 1.20977 0.99850 0.95520 0.93070 1.22121 1.00416 0.95577 0.98786 1.20900 0.96694 0.93705 0.86916 1.44043 1.66841 1.07005 1.13641 1.19158 1.15730 1.18203 0.85043 0.91833 1.25037 0.96583 1.00926 0.97151 1.70029 1.24277 1.39356 1.21178 0.86379 0.80921 0.77939 0.81581 1.20914 1.21663 1.21098 1.20755 0.95509 0.84527 0.94719 1.22221 1.00798 0.97592 0.96706 0.90228 0.90776 0.91089 0.83867 0.84051 0.84486 0.82282 0.76532 0.90765 0.91360 0.91696 0.91476 0.91662 0.92418 0.93076 0.96594 0.92982 0.93654 0.96581 0.89614 0.93459 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.43 37.15 0.35 -0.90 16 2 C 0.07 0.73 2.91 -27.89 -0.08 0.65 16 3 H 0.11 1.04 6.98 -51.93 -0.36 0.68 16 4 O -0.28 -3.32 9.29 -38.62 -0.36 -3.68 16 5 C 0.32 3.33 7.45 -17.12 -0.13 3.20 16 6 C -0.19 -1.54 10.04 -39.28 -0.39 -1.94 16 7 C -0.04 -0.23 10.17 -39.31 -0.40 -0.63 16 8 C -0.21 -1.12 10.11 -39.43 -0.40 -1.52 16 9 C 0.14 0.90 11.18 -17.56 -0.20 0.71 16 10 N -0.54 -4.98 8.65 -13.33 -0.12 -5.09 16 11 C 0.51 6.42 7.23 -10.98 -0.08 6.34 16 12 O -0.52 -8.89 16.50 -14.35 -0.24 -9.13 16 13 N -0.72 -7.41 5.45 -60.29 -0.33 -7.74 16 14 C 0.12 1.42 5.43 -4.04 -0.02 1.40 16 15 C -0.12 -1.49 4.80 -26.74 -0.13 -1.62 16 16 C -0.07 -1.19 2.15 -90.58 -0.19 -1.38 16 17 C -0.13 -2.22 5.14 -26.61 -0.14 -2.36 16 18 C 0.14 3.07 6.52 -3.71 -0.02 3.05 16 19 N -0.59 -14.97 2.99 -172.32 -0.52 -15.49 16 20 C -0.25 -6.98 9.58 -15.06 -0.14 -7.13 16 21 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 22 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 23 N -0.90 -26.42 11.19 55.49 0.62 -25.80 16 24 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 C 0.17 4.06 5.30 -3.71 -0.02 4.04 16 29 C -0.13 -2.46 5.36 -26.61 -0.14 -2.60 16 30 H 0.08 0.44 7.56 -51.93 -0.39 0.05 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 35 H 0.14 0.35 8.06 -52.48 -0.42 -0.07 16 36 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 37 H 0.40 2.87 7.89 -40.82 -0.32 2.54 16 38 H 0.07 1.00 6.54 -51.93 -0.34 0.66 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 0.78 6.50 -51.93 -0.34 0.44 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.05 1.10 7.93 -51.93 -0.41 0.68 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 2.29 6.07 -51.93 -0.31 1.97 16 50 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 51 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 410.16 15.07 6.18 6.18 Total: -1.00 -34.37 410.16 -10.38 -44.75 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -8.37 Total: -0.06 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.23 Total: -0.74 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.34 Total: -54.11 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.60 Total: -12.80 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.37 -10.38 -44.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753600031.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.814 kcal (2) G-P(sol) polarization free energy of solvation -34.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds