Wall clock time and date at job start Wed Apr 1 2020 05:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47588 * 2 1 4 4 O 1.42905 * 109.47070 * 119.99670 * 2 1 3 5 5 C 1.35677 * 117.00488 * 270.00531 * 4 2 1 6 6 C 1.38912 * 119.68798 * 180.02562 * 5 4 2 7 7 C 1.38376 * 119.11423 * 179.97438 * 6 5 4 8 8 C 1.38838 * 118.48421 * 359.97438 * 7 6 5 9 9 C 1.38044 * 119.28434 * 0.24986 * 8 7 6 10 10 N 1.31967 * 120.83724 * 359.45642 * 9 8 7 11 11 C 1.50700 * 109.47428 * 239.99743 * 2 1 3 12 12 O 1.21280 * 120.00036 * 245.00457 * 11 2 1 13 13 N 1.34776 * 119.99980 * 65.00254 * 11 2 1 14 14 C 1.46494 * 120.00175 * 180.02562 * 13 11 2 15 15 C 1.53002 * 109.47305 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47075 * 180.02562 * 15 14 13 17 17 C 1.53048 * 109.45811 * 295.02679 * 16 15 14 18 18 C 1.53185 * 109.31057 * 178.60269 * 17 16 15 19 19 N 1.46931 * 108.76722 * 54.65653 * 18 17 16 20 20 C 1.36935 * 120.63587 * 126.40377 * 19 18 17 21 21 H 1.08003 * 119.99180 * 331.82656 * 20 19 18 22 22 C 1.38804 * 120.00432 * 151.82388 * 20 19 18 23 23 N 1.31616 * 120.00202 * 343.07860 * 22 20 19 24 24 Si 1.86800 * 120.00194 * 163.07453 * 22 20 19 25 25 H 1.48498 * 109.47180 * 89.99895 * 24 22 20 26 26 H 1.48494 * 109.47271 * 210.00266 * 24 22 20 27 27 H 1.48500 * 109.46969 * 330.00282 * 24 22 20 28 28 C 1.46924 * 118.73463 * 306.38374 * 19 18 17 29 29 C 1.53037 * 109.45702 * 174.97548 * 16 15 14 30 30 H 1.08999 * 109.46757 * 60.00012 * 1 2 3 31 31 H 1.08993 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47053 * 300.00414 * 1 2 3 33 33 H 1.08001 * 120.44121 * 359.96605 * 6 5 4 34 34 H 1.07999 * 120.76148 * 180.02562 * 7 6 5 35 35 H 1.07993 * 120.35314 * 179.97438 * 8 7 6 36 36 H 1.08002 * 119.57719 * 179.73066 * 9 8 7 37 37 H 0.96999 * 119.99862 * 359.97438 * 13 11 2 38 38 H 1.09002 * 109.47016 * 300.00172 * 14 13 11 39 39 H 1.09006 * 109.47014 * 59.99874 * 14 13 11 40 40 H 1.08996 * 109.46981 * 299.99872 * 15 14 13 41 41 H 1.08994 * 109.46703 * 59.99969 * 15 14 13 42 42 H 1.08998 * 109.46111 * 55.00115 * 16 15 14 43 43 H 1.08996 * 109.49359 * 298.56778 * 17 16 15 44 44 H 1.08997 * 109.49913 * 58.66384 * 17 16 15 45 45 H 1.09002 * 109.60148 * 294.86820 * 18 17 16 46 46 H 1.08998 * 109.70286 * 174.50410 * 18 17 16 47 47 H 0.96997 * 120.00600 * 180.02562 * 23 22 20 48 48 H 1.08996 * 109.58928 * 293.81487 * 28 19 18 49 49 H 1.09005 * 109.70171 * 173.46761 * 28 19 18 50 50 H 1.08996 * 109.49831 * 301.32948 * 29 16 15 51 51 H 1.09002 * 109.49989 * 61.40037 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2115 0.0829 2.2743 6 6 2.6746 -0.5147 3.4396 7 6 2.8803 0.2682 4.5620 8 6 2.6147 1.6283 4.4782 9 6 2.1519 2.1540 3.2886 10 7 1.9708 1.3826 2.2333 11 6 2.0324 -0.7104 -1.2304 12 8 2.6530 -1.7467 -1.1214 13 7 1.7920 -0.1943 -2.4520 14 6 2.2799 -0.8851 -3.6481 15 6 1.8748 -0.0952 -4.8942 16 6 2.3838 -0.8172 -6.1435 17 6 3.9143 -0.8182 -6.1437 18 6 4.4202 -1.5720 -7.3776 19 7 3.8173 -0.9743 -8.5768 20 6 4.6027 -0.5495 -9.6149 21 1 5.6141 -0.2204 -9.4272 22 6 4.0992 -0.5419 -10.9084 23 7 3.0189 -1.2356 -11.1981 24 14 4.9547 0.4530 -12.2379 25 1 5.9775 -0.3907 -12.9067 26 1 3.9548 0.9052 -13.2384 27 1 5.6119 1.6355 -11.6256 28 6 2.3555 -0.8415 -8.6411 29 6 1.8726 -0.0961 -7.3928 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.8712 -1.5763 3.4693 34 1 3.2400 -0.1687 5.4818 35 1 2.7642 2.2674 5.3358 36 1 1.9396 3.2107 3.2195 37 1 1.2953 0.6343 -2.5392 38 1 3.3662 -0.9638 -3.6045 39 1 1.8448 -1.8836 -3.6938 40 1 0.7885 -0.0170 -4.9376 41 1 2.3095 0.9032 -4.8487 42 1 2.0200 -1.8447 -6.1428 43 1 4.2787 0.2087 -6.1697 44 1 4.2779 -1.3111 -5.2421 45 1 4.1329 -2.6212 -7.3084 46 1 5.5057 -1.4936 -7.4366 47 1 2.6672 -1.2307 -12.1021 48 1 1.8998 -1.8310 -8.6750 49 1 2.0763 -0.2801 -9.5328 50 1 0.7829 -0.0751 -7.3805 51 1 2.2561 0.9241 -7.4066 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753600033.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:07 Heat of formation + Delta-G solvation = -27.017851 kcal Electronic energy + Delta-G solvation = -29604.744199 eV Core-core repulsion = 25504.725838 eV Total energy + Delta-G solvation = -4100.018362 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.17941 -39.96264 -38.28902 -37.79231 -35.42174 -33.71072 -32.95175 -32.52380 -31.18678 -30.42947 -29.89832 -28.46908 -25.67145 -24.85695 -24.01254 -23.41655 -22.79059 -21.90681 -20.93073 -20.34544 -19.05245 -18.94230 -17.86301 -16.82271 -16.73692 -16.36831 -16.13763 -15.92096 -15.44395 -14.96899 -14.82129 -14.53013 -14.27222 -13.85456 -13.75698 -13.58620 -13.52824 -13.46983 -13.24892 -12.81421 -12.76617 -12.52834 -12.41464 -12.22210 -12.17812 -11.57030 -11.54673 -11.31296 -11.19765 -10.87714 -10.66779 -10.45227 -10.40009 -10.19709 -10.13796 -10.07976 -9.94089 -9.81711 -9.44631 -9.37068 -9.16291 -8.93433 -8.43328 -6.61493 -5.75411 -3.17306 0.71230 0.81756 2.21532 2.38026 3.22291 3.34901 3.38909 3.45773 3.48307 3.81607 4.33695 4.41518 4.51536 4.52587 4.59214 4.64247 4.75947 4.77755 4.92694 5.05523 5.16609 5.26858 5.28431 5.30298 5.41066 5.48142 5.50673 5.62118 5.65701 5.74897 5.76039 5.80685 5.96506 6.02426 6.04755 6.13306 6.23606 6.32251 6.40745 6.58790 6.67183 6.74208 6.79509 6.86534 6.89980 7.05911 7.25499 7.39480 7.41949 7.70125 7.82757 7.98644 8.49328 9.25689 9.89564 10.46825 11.33088 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028184 B = 0.001541 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.245777 B =18162.317454 C =18312.549200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.073 3.927 3 H 0.114 0.886 4 O -0.276 6.276 5 C 0.324 3.676 6 C -0.188 4.188 7 C -0.040 4.040 8 C -0.215 4.215 9 C 0.140 3.860 10 N -0.543 5.543 11 C 0.512 3.488 12 O -0.520 6.520 13 N -0.723 5.723 14 C 0.118 3.882 15 C -0.125 4.125 16 C -0.075 4.075 17 C -0.130 4.130 18 C 0.144 3.856 19 N -0.592 5.592 20 C -0.250 4.250 21 H 0.064 0.936 22 C 0.001 3.999 23 N -0.904 5.904 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.171 3.829 29 C -0.134 4.134 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.160 0.840 37 H 0.400 0.600 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.016 0.984 46 H 0.052 0.948 47 H 0.253 0.747 48 H 0.016 0.984 49 H 0.086 0.914 50 H 0.047 0.953 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.618 7.087 31.255 32.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.013 3.987 3 H 0.132 0.868 4 O -0.181 6.181 5 C 0.145 3.855 6 C -0.209 4.209 7 C -0.065 4.065 8 C -0.235 4.235 9 C -0.016 4.016 10 N -0.267 5.267 11 C 0.297 3.703 12 O -0.395 6.395 13 N -0.376 5.376 14 C -0.005 4.005 15 C -0.163 4.163 16 C -0.094 4.094 17 C -0.169 4.169 18 C 0.018 3.982 19 N -0.315 5.315 20 C -0.380 4.380 21 H 0.082 0.918 22 C -0.197 4.197 23 N -0.548 5.548 24 Si 0.731 3.269 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.045 3.955 29 C -0.173 4.173 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.155 0.845 36 H 0.177 0.823 37 H 0.235 0.765 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.034 0.966 49 H 0.104 0.896 50 H 0.065 0.935 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.488 6.356 30.309 31.640 hybrid contribution 0.367 0.727 -0.081 0.819 sum -6.121 7.083 30.228 31.644 Atomic orbital electron populations 1.22156 0.92272 1.03787 1.03855 1.22093 0.95835 0.98000 0.82816 0.86831 1.86398 1.79799 1.34342 1.17594 1.19906 0.91162 0.87400 0.87047 1.21120 1.05965 1.02392 0.91393 1.21447 0.93973 0.93436 0.97680 1.22003 1.05179 0.96247 1.00057 1.22435 0.92595 0.99226 0.87295 1.67256 1.22103 1.04721 1.32654 1.20192 0.80242 0.85611 0.84304 1.90754 1.39325 1.22990 1.86426 1.45958 1.58098 1.27989 1.05586 1.21592 1.00134 0.96232 0.82523 1.21913 1.01045 0.99608 0.93709 1.20976 0.96177 0.99162 0.93088 1.22121 0.94858 1.01155 0.98782 1.20900 0.96507 0.94038 0.86771 1.44048 1.02035 1.69942 1.15516 1.19180 0.97202 1.36011 0.85633 0.91827 1.25032 0.98434 0.99240 0.97024 1.70031 1.24569 1.41049 1.19188 0.86323 0.78667 0.80229 0.81726 1.21427 1.21592 1.20550 1.20754 0.83328 0.96811 0.94625 1.22218 0.98392 0.99978 0.96719 0.90227 0.91124 0.90770 0.83869 0.84047 0.84478 0.82272 0.76535 0.90820 0.91309 0.91675 0.91492 0.91648 0.92424 0.93087 0.96585 0.92989 0.93707 0.96572 0.89614 0.93457 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.49 37.16 0.35 -0.89 16 2 C 0.07 0.73 2.90 -27.88 -0.08 0.65 16 3 H 0.11 1.04 6.98 -51.93 -0.36 0.68 16 4 O -0.28 -3.32 9.30 -38.59 -0.36 -3.68 16 5 C 0.32 3.33 7.45 -17.12 -0.13 3.21 16 6 C -0.19 -1.55 10.04 -39.28 -0.39 -1.94 16 7 C -0.04 -0.23 10.17 -39.31 -0.40 -0.63 16 8 C -0.21 -1.13 10.11 -39.43 -0.40 -1.53 16 9 C 0.14 0.91 11.18 -17.56 -0.20 0.72 16 10 N -0.54 -5.00 8.65 -13.33 -0.12 -5.12 16 11 C 0.51 6.42 7.18 -10.99 -0.08 6.34 16 12 O -0.52 -8.88 16.51 -14.30 -0.24 -9.12 16 13 N -0.72 -7.41 5.52 -60.29 -0.33 -7.75 16 14 C 0.12 1.42 5.43 -4.04 -0.02 1.40 16 15 C -0.12 -1.49 4.80 -26.73 -0.13 -1.62 16 16 C -0.07 -1.19 2.15 -90.57 -0.19 -1.38 16 17 C -0.13 -2.24 5.15 -26.61 -0.14 -2.37 16 18 C 0.14 3.08 6.52 -3.71 -0.02 3.05 16 19 N -0.59 -14.98 2.99 -172.32 -0.52 -15.50 16 20 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 21 H 0.06 1.74 7.89 -52.48 -0.41 1.33 16 22 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 23 N -0.90 -26.43 11.19 55.49 0.62 -25.81 16 24 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 C 0.17 4.06 5.30 -3.71 -0.02 4.04 16 29 C -0.13 -2.46 5.36 -26.61 -0.14 -2.60 16 30 H 0.08 0.44 7.92 -51.93 -0.41 0.03 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 35 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 36 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.40 2.87 8.25 -40.82 -0.34 2.53 16 38 H 0.07 1.00 6.54 -51.93 -0.34 0.66 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.78 6.50 -51.93 -0.34 0.44 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.05 1.10 7.93 -51.93 -0.41 0.68 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 2.29 6.07 -51.93 -0.31 1.97 16 50 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 410.96 15.07 6.19 6.19 Total: -1.00 -34.42 410.96 -10.40 -44.82 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -8.41 Total: -0.11 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -2.22 Total: -0.72 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.34 Total: -54.17 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.59 Total: -12.80 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.42 -10.40 -44.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753600033.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.805 kcal (2) G-P(sol) polarization free energy of solvation -34.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds