Wall clock time and date at job start Wed Apr 1 2020 05:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47588 * 2 1 4 4 O 1.42905 * 109.47070 * 119.99670 * 2 1 3 5 5 C 1.35677 * 117.00488 * 270.00531 * 4 2 1 6 6 C 1.38912 * 119.68798 * 180.02562 * 5 4 2 7 7 C 1.38376 * 119.11423 * 179.97438 * 6 5 4 8 8 C 1.38838 * 118.48421 * 359.97438 * 7 6 5 9 9 C 1.38044 * 119.28434 * 0.24986 * 8 7 6 10 10 N 1.31967 * 120.83724 * 359.45642 * 9 8 7 11 11 C 1.50700 * 109.47428 * 239.99743 * 2 1 3 12 12 O 1.21280 * 120.00036 * 245.00457 * 11 2 1 13 13 N 1.34776 * 119.99980 * 65.00254 * 11 2 1 14 14 C 1.46494 * 120.00175 * 180.02562 * 13 11 2 15 15 C 1.53002 * 109.47305 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47075 * 180.02562 * 15 14 13 17 17 C 1.53048 * 109.45811 * 295.02679 * 16 15 14 18 18 C 1.53185 * 109.31057 * 178.60269 * 17 16 15 19 19 N 1.46931 * 108.76722 * 54.65653 * 18 17 16 20 20 C 1.36935 * 120.63587 * 126.40377 * 19 18 17 21 21 H 1.08003 * 119.99180 * 331.82656 * 20 19 18 22 22 C 1.38804 * 120.00432 * 151.82388 * 20 19 18 23 23 N 1.31616 * 120.00202 * 343.07860 * 22 20 19 24 24 Si 1.86800 * 120.00194 * 163.07453 * 22 20 19 25 25 H 1.48498 * 109.47180 * 89.99895 * 24 22 20 26 26 H 1.48494 * 109.47271 * 210.00266 * 24 22 20 27 27 H 1.48500 * 109.46969 * 330.00282 * 24 22 20 28 28 C 1.46924 * 118.73463 * 306.38374 * 19 18 17 29 29 C 1.53037 * 109.45702 * 174.97548 * 16 15 14 30 30 H 1.08999 * 109.46757 * 60.00012 * 1 2 3 31 31 H 1.08993 * 109.47255 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47053 * 300.00414 * 1 2 3 33 33 H 1.08001 * 120.44121 * 359.96605 * 6 5 4 34 34 H 1.07999 * 120.76148 * 180.02562 * 7 6 5 35 35 H 1.07993 * 120.35314 * 179.97438 * 8 7 6 36 36 H 1.08002 * 119.57719 * 179.73066 * 9 8 7 37 37 H 0.96999 * 119.99862 * 359.97438 * 13 11 2 38 38 H 1.09002 * 109.47016 * 300.00172 * 14 13 11 39 39 H 1.09006 * 109.47014 * 59.99874 * 14 13 11 40 40 H 1.08996 * 109.46981 * 299.99872 * 15 14 13 41 41 H 1.08994 * 109.46703 * 59.99969 * 15 14 13 42 42 H 1.08998 * 109.46111 * 55.00115 * 16 15 14 43 43 H 1.08996 * 109.49359 * 298.56778 * 17 16 15 44 44 H 1.08997 * 109.49913 * 58.66384 * 17 16 15 45 45 H 1.09002 * 109.60148 * 294.86820 * 18 17 16 46 46 H 1.08998 * 109.70286 * 174.50410 * 18 17 16 47 47 H 0.96997 * 120.00600 * 180.02562 * 23 22 20 48 48 H 1.08996 * 109.58928 * 293.81487 * 28 19 18 49 49 H 1.09005 * 109.70171 * 173.46761 * 28 19 18 50 50 H 1.08996 * 109.49831 * 301.32948 * 29 16 15 51 51 H 1.09002 * 109.49989 * 61.40037 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2115 0.0829 2.2743 6 6 2.6746 -0.5147 3.4396 7 6 2.8803 0.2682 4.5620 8 6 2.6147 1.6283 4.4782 9 6 2.1519 2.1540 3.2886 10 7 1.9708 1.3826 2.2333 11 6 2.0324 -0.7104 -1.2304 12 8 2.6530 -1.7467 -1.1214 13 7 1.7920 -0.1943 -2.4520 14 6 2.2799 -0.8851 -3.6481 15 6 1.8748 -0.0952 -4.8942 16 6 2.3838 -0.8172 -6.1435 17 6 3.9143 -0.8182 -6.1437 18 6 4.4202 -1.5720 -7.3776 19 7 3.8173 -0.9743 -8.5768 20 6 4.6027 -0.5495 -9.6149 21 1 5.6141 -0.2204 -9.4272 22 6 4.0992 -0.5419 -10.9084 23 7 3.0189 -1.2356 -11.1981 24 14 4.9547 0.4530 -12.2379 25 1 5.9775 -0.3907 -12.9067 26 1 3.9548 0.9052 -13.2384 27 1 5.6119 1.6355 -11.6256 28 6 2.3555 -0.8415 -8.6411 29 6 1.8726 -0.0961 -7.3928 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.8712 -1.5763 3.4693 34 1 3.2400 -0.1687 5.4818 35 1 2.7642 2.2674 5.3358 36 1 1.9396 3.2107 3.2195 37 1 1.2953 0.6343 -2.5392 38 1 3.3662 -0.9638 -3.6045 39 1 1.8448 -1.8836 -3.6938 40 1 0.7885 -0.0170 -4.9376 41 1 2.3095 0.9032 -4.8487 42 1 2.0200 -1.8447 -6.1428 43 1 4.2787 0.2087 -6.1697 44 1 4.2779 -1.3111 -5.2421 45 1 4.1329 -2.6212 -7.3084 46 1 5.5057 -1.4936 -7.4366 47 1 2.6672 -1.2307 -12.1021 48 1 1.8998 -1.8310 -8.6750 49 1 2.0763 -0.2801 -9.5328 50 1 0.7829 -0.0751 -7.3805 51 1 2.2561 0.9241 -7.4066 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753600033.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:06 Heat of formation + Delta-G solvation = -49.433784 kcal Electronic energy + Delta-G solvation = -29605.716227 eV Core-core repulsion = 25504.725838 eV Total energy + Delta-G solvation = -4100.990390 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.83911 -40.81895 -39.56703 -38.75587 -36.72593 -35.18521 -33.61881 -33.37366 -32.74621 -31.57402 -30.99908 -29.87618 -27.05978 -25.88344 -24.79557 -24.41321 -23.85844 -23.34692 -22.19195 -21.44149 -20.59542 -19.59251 -18.70994 -18.63908 -17.50043 -17.04570 -16.88744 -16.77632 -16.74919 -16.33998 -15.78197 -15.53493 -15.32886 -15.28858 -15.16261 -14.89174 -14.47511 -14.44248 -14.19867 -14.02515 -13.88633 -13.84647 -13.39860 -13.02780 -12.95318 -12.92909 -12.82736 -12.78706 -12.54117 -12.30005 -12.20808 -12.13798 -11.93093 -11.80716 -11.52085 -11.13737 -10.98825 -10.91962 -10.82811 -10.59579 -10.52563 -10.16925 -9.50089 -8.65869 -7.86856 -5.32352 0.20127 0.31992 1.42555 1.45958 1.46885 1.47558 1.57188 2.45192 2.51425 2.82575 3.27254 3.28102 3.54247 3.73265 3.83099 3.85898 3.93196 3.97732 4.05835 4.11972 4.13800 4.23163 4.29879 4.37025 4.43163 4.59204 4.64794 4.65462 4.68970 4.75266 4.77764 4.80679 4.90405 5.02648 5.04122 5.06848 5.08748 5.11393 5.27228 5.29764 5.34145 5.37618 5.41227 5.47743 5.52955 5.56990 5.67756 5.82143 6.16320 6.40107 6.44147 6.84681 7.10268 7.16176 7.88236 8.39862 9.19166 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028184 B = 0.001541 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.245777 B =18162.317454 C =18312.549200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.077 3.923 3 H 0.124 0.876 4 O -0.305 6.305 5 C 0.293 3.707 6 C -0.207 4.207 7 C -0.038 4.038 8 C -0.205 4.205 9 C 0.127 3.873 10 N -0.559 5.559 11 C 0.510 3.490 12 O -0.574 6.574 13 N -0.705 5.705 14 C 0.123 3.877 15 C -0.107 4.107 16 C -0.071 4.071 17 C -0.118 4.118 18 C 0.137 3.863 19 N -0.611 5.611 20 C -0.264 4.264 21 H 0.063 0.937 22 C -0.051 4.051 23 N -0.936 5.936 24 Si 0.967 3.033 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.270 1.270 28 C 0.174 3.826 29 C -0.120 4.120 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.171 0.829 35 H 0.170 0.830 36 H 0.188 0.812 37 H 0.419 0.581 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.008 0.992 46 H 0.047 0.953 47 H 0.250 0.750 48 H -0.009 1.009 49 H 0.051 0.949 50 H 0.071 0.929 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.093 9.658 33.760 35.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.018 3.982 3 H 0.141 0.859 4 O -0.212 6.212 5 C 0.115 3.885 6 C -0.228 4.228 7 C -0.063 4.063 8 C -0.225 4.225 9 C -0.028 4.028 10 N -0.283 5.283 11 C 0.296 3.704 12 O -0.452 6.452 13 N -0.359 5.359 14 C -0.001 4.001 15 C -0.145 4.145 16 C -0.090 4.090 17 C -0.157 4.157 18 C 0.012 3.988 19 N -0.335 5.335 20 C -0.395 4.395 21 H 0.081 0.919 22 C -0.247 4.247 23 N -0.582 5.582 24 Si 0.795 3.205 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.195 1.195 28 C 0.048 3.952 29 C -0.159 4.159 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.159 0.841 34 H 0.189 0.811 35 H 0.188 0.812 36 H 0.204 0.796 37 H 0.257 0.743 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.026 0.974 46 H 0.066 0.934 47 H 0.059 0.941 48 H 0.009 0.991 49 H 0.070 0.930 50 H 0.090 0.910 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.978 8.972 32.840 34.752 hybrid contribution 0.561 -0.086 -0.776 0.961 sum -6.417 8.886 32.065 33.886 Atomic orbital electron populations 1.22137 0.90383 1.03489 1.05248 1.22129 0.97093 0.97593 0.81418 0.85889 1.86349 1.80621 1.35735 1.18514 1.20151 0.93125 0.88113 0.87089 1.21348 1.06664 1.02860 0.91902 1.21857 0.92908 0.93704 0.97811 1.22418 1.03128 0.96333 1.00574 1.23040 0.92229 1.00307 0.87195 1.67223 1.22646 1.04405 1.33999 1.20711 0.79270 0.84962 0.85434 1.90726 1.41851 1.25436 1.87218 1.45759 1.57398 1.28270 1.04484 1.21406 0.99274 0.96107 0.83266 1.21704 1.02413 0.99300 0.91078 1.20890 0.95061 0.99153 0.93904 1.21975 0.95952 1.00522 0.97220 1.21072 0.96352 0.94073 0.87316 1.44334 1.02557 1.70493 1.16099 1.19513 0.97561 1.35728 0.86669 0.91902 1.25801 0.99378 1.00384 0.99104 1.70190 1.26113 1.42527 1.19353 0.85284 0.77482 0.78874 0.78850 1.21249 1.21662 1.19534 1.20621 0.82801 0.95651 0.96121 1.22010 0.99818 0.99081 0.94965 0.87694 0.92227 0.90419 0.84053 0.81120 0.81207 0.79551 0.74331 0.92234 0.92317 0.89331 0.90147 0.92260 0.92433 0.90923 0.97436 0.93408 0.94119 0.99077 0.93033 0.90997 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.49 71.98 0.68 -1.47 16 2 C 0.08 1.52 2.90 29.85 0.09 1.61 16 3 H 0.12 2.12 6.98 -2.39 -0.02 2.10 16 4 O -0.31 -7.58 9.30 -70.96 -0.66 -8.24 16 5 C 0.29 6.05 7.45 84.79 0.63 6.68 16 6 C -0.21 -3.37 10.04 22.46 0.23 -3.15 16 7 C -0.04 -0.36 10.17 22.45 0.23 -0.13 16 8 C -0.20 -1.55 10.11 22.37 0.23 -1.32 16 9 C 0.13 1.37 11.18 84.63 0.95 2.31 16 10 N -0.56 -9.68 8.65 -308.96 -2.67 -12.35 16 11 C 0.51 12.54 7.18 87.66 0.63 13.17 16 12 O -0.57 -20.06 16.51 15.96 0.26 -19.80 16 13 N -0.71 -13.05 5.52 -463.06 -2.55 -15.61 16 14 C 0.12 2.74 5.43 86.38 0.47 3.21 16 15 C -0.11 -2.21 4.80 30.60 0.15 -2.07 16 16 C -0.07 -2.12 2.15 -10.76 -0.02 -2.14 16 17 C -0.12 -3.91 5.15 30.67 0.16 -3.75 16 18 C 0.14 5.92 6.52 86.36 0.56 6.48 16 19 N -0.61 -31.51 2.99 -699.11 -2.09 -33.60 16 20 C -0.26 -14.95 9.58 84.03 0.81 -14.14 16 21 H 0.06 3.48 7.89 -2.91 -0.02 3.46 16 22 C -0.05 -2.93 4.92 84.86 0.42 -2.51 16 23 N -0.94 -56.33 11.19 21.65 0.24 -56.08 16 24 Si 0.97 45.49 29.59 68.60 2.03 47.52 16 25 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 26 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 27 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 28 C 0.17 8.44 5.30 86.36 0.46 8.90 16 29 C -0.12 -4.24 5.36 30.67 0.16 -4.07 16 30 H 0.10 0.87 7.92 -2.39 -0.02 0.85 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 35 H 0.17 0.14 8.06 -2.91 -0.02 0.12 16 36 H 0.19 0.78 8.06 -2.91 -0.02 0.76 16 37 H 0.42 4.64 8.25 -92.71 -0.77 3.87 16 38 H 0.06 1.53 6.54 -2.39 -0.02 1.51 16 39 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 42 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.07 2.12 6.50 -2.39 -0.02 2.10 16 45 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.05 2.04 7.93 -2.39 -0.02 2.03 16 47 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 48 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 49 H 0.05 2.84 6.07 -2.38 -0.01 2.82 16 50 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 51 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -78.93 410.96 1.53 -77.40 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.15 Total: 13.16 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 6.81 Total: 7.59 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -7.08 Total: -117.64 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.40 Total: -28.04 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -78.93 1.53 -77.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753600033.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.971 kcal (2) G-P(sol) polarization free energy of solvation -78.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds