Wall clock time and date at job start Wed Apr 1 2020 04:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47139 * 2 1 4 4 O 1.42904 * 109.47444 * 119.99749 * 2 1 3 5 5 C 1.42900 * 113.99903 * 270.00261 * 4 2 1 6 6 C 1.50700 * 109.47350 * 179.97438 * 5 4 2 7 7 C 1.38650 * 120.79003 * 89.99606 * 6 5 4 8 8 C 1.38196 * 119.16162 * 179.74839 * 7 6 5 9 9 N 1.31868 * 120.76677 * 0.25587 * 8 7 6 10 10 C 1.31868 * 121.72614 * 359.97438 * 9 8 7 11 11 C 1.38206 * 120.76570 * 359.97438 * 10 9 8 12 12 C 1.50699 * 109.47392 * 239.99628 * 2 1 3 13 13 O 1.21278 * 120.00423 * 250.06747 * 12 2 1 14 14 N 1.34778 * 119.99552 * 70.06808 * 12 2 1 15 15 C 1.47020 * 125.65187 * 5.23872 * 14 12 2 16 16 C 1.54328 * 107.27065 * 181.02672 * 15 14 12 17 17 C 1.55148 * 102.94271 * 22.19502 * 16 15 14 18 18 C 1.53003 * 111.00734 * 82.57384 * 17 16 15 19 19 C 1.52999 * 111.00301 * 206.42534 * 17 16 15 20 20 N 1.46504 * 109.46921 * 298.54260 * 19 17 16 21 21 C 1.36944 * 119.99771 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00005 * 0.02562 * 21 20 19 23 23 C 1.38814 * 119.99705 * 179.97438 * 21 20 19 24 24 N 1.31617 * 120.00013 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99786 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47353 * 90.00462 * 25 23 21 27 27 H 1.48506 * 109.47005 * 210.00380 * 25 23 21 28 28 H 1.48505 * 109.47233 * 330.00325 * 25 23 21 29 29 C 1.47429 * 125.64555 * 184.94152 * 14 12 2 30 30 H 1.08997 * 109.46922 * 174.96894 * 1 2 3 31 31 H 1.09004 * 109.47190 * 294.96402 * 1 2 3 32 32 H 1.08994 * 109.47136 * 54.96642 * 1 2 3 33 33 H 1.09008 * 109.47280 * 59.99749 * 5 4 2 34 34 H 1.08997 * 109.47412 * 300.00292 * 5 4 2 35 35 H 1.08003 * 120.41568 * 0.02688 * 7 6 5 36 36 H 1.08004 * 119.62061 * 180.27783 * 8 7 6 37 37 H 1.07999 * 119.61728 * 179.97438 * 10 9 8 38 38 H 1.07995 * 120.41969 * 180.02562 * 11 10 9 39 39 H 1.09004 * 109.88649 * 300.44337 * 15 14 12 40 40 H 1.09004 * 109.88048 * 61.45567 * 15 14 12 41 41 H 1.08999 * 110.71594 * 140.55954 * 16 15 14 42 42 H 1.09002 * 110.71951 * 263.65219 * 16 15 14 43 43 H 1.08996 * 109.47197 * 61.44763 * 18 17 16 44 44 H 1.08994 * 109.47249 * 181.45203 * 18 17 16 45 45 H 1.09008 * 109.46927 * 301.45559 * 18 17 16 46 46 H 1.08994 * 109.47777 * 58.54524 * 19 17 16 47 47 H 1.09002 * 109.47088 * 178.55039 * 19 17 16 48 48 H 0.96994 * 120.00100 * 0.02562 * 20 19 17 49 49 H 0.97001 * 119.99766 * 179.97438 * 24 23 21 50 50 H 1.09006 * 110.35928 * 274.73745 * 29 14 12 51 51 H 1.08993 * 110.37255 * 37.06075 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7004 -0.6282 3.4614 7 6 4.0591 -0.8121 3.6676 8 6 4.4807 -1.5579 4.7520 9 7 3.6078 -2.0951 5.5816 10 6 2.3085 -1.9448 5.4140 11 6 1.8127 -1.2114 4.3528 12 6 2.0324 -0.7105 -1.2304 13 8 2.5721 -1.7917 -1.1284 14 7 1.8819 -0.1442 -2.4441 15 6 1.3482 1.2013 -2.7017 16 6 1.3386 1.4053 -4.2314 17 6 1.3372 -0.0476 -4.7757 18 6 -0.0785 -0.6278 -4.7867 19 6 1.9644 -0.1116 -6.1698 20 7 1.1792 0.7075 -7.0966 21 6 1.5530 0.8037 -8.4105 22 1 2.4264 0.2755 -8.7635 23 6 0.8087 1.5793 -9.2888 24 7 -0.2559 2.2226 -8.8586 25 14 1.3181 1.7100 -11.0812 26 1 0.6579 0.6340 -11.8632 27 1 0.9092 3.0334 -11.6168 28 1 2.7923 1.5666 -11.1886 29 6 2.2308 -0.7691 -3.7330 30 1 -0.3633 -1.0237 -0.0901 31 1 -0.3634 0.4337 0.9317 32 1 -0.3633 0.5899 -0.8414 33 1 1.2538 0.6548 2.5589 34 1 2.9319 0.9515 2.0450 35 1 4.7789 -0.3743 2.9918 36 1 5.5375 -1.7021 4.9222 37 1 1.6239 -2.4002 6.1142 38 1 0.7476 -1.0915 4.2211 39 1 0.3335 1.2788 -2.3111 40 1 1.9852 1.9494 -2.2296 41 1 0.4389 1.9352 -4.5441 42 1 2.2316 1.9403 -4.5548 43 1 -0.7109 -0.0306 -5.4435 44 1 -0.0472 -1.6556 -5.1483 45 1 -0.4861 -0.6106 -3.7758 46 1 2.9857 0.2667 -6.1264 47 1 1.9740 -1.1448 -6.5168 48 1 0.3951 1.1822 -6.7794 49 1 -0.7757 2.7649 -9.4722 50 1 3.2853 -0.6096 -3.9586 51 1 2.0036 -1.8348 -3.7118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754705519.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:20 Heat of formation + Delta-G solvation = -29.016901 kcal Electronic energy + Delta-G solvation = -30137.170178 eV Core-core repulsion = 26037.065131 eV Total energy + Delta-G solvation = -4100.105047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.67572 -40.37681 -38.73817 -37.47607 -34.91417 -33.86113 -32.83831 -31.60054 -31.42106 -30.22758 -29.46103 -27.32505 -26.88813 -25.71212 -24.21739 -23.85482 -22.69750 -22.49304 -22.33601 -19.55973 -18.90100 -17.83249 -17.22771 -17.03935 -16.89477 -16.53640 -16.10600 -15.98003 -15.61296 -15.34918 -14.61034 -14.24020 -14.14403 -14.08679 -14.02454 -13.87633 -13.75104 -13.39803 -13.11561 -12.97116 -12.75605 -12.57935 -12.46096 -12.34452 -12.08563 -11.94157 -11.77351 -11.59550 -11.39541 -11.07195 -10.84997 -10.60063 -10.39794 -10.35387 -10.30768 -10.15093 -10.01672 -9.87919 -9.72332 -9.60260 -9.52925 -8.91249 -8.65764 -6.95628 -5.80890 -3.08843 0.72296 0.75799 2.49644 2.55779 3.31340 3.41239 3.47018 3.47986 3.66662 4.08575 4.15395 4.25597 4.32694 4.51856 4.54733 4.61770 4.65070 4.67586 4.72838 4.76221 4.86555 4.91359 4.97693 5.13218 5.21793 5.27973 5.31445 5.37682 5.38941 5.46504 5.54559 5.55306 5.68021 5.79717 5.83604 5.89221 5.93408 5.98047 6.06982 6.21313 6.22836 6.28970 6.35352 6.43513 6.59023 6.63618 6.70821 6.79511 7.43989 7.57753 7.67357 8.07948 8.38373 9.50194 10.06874 10.42157 11.41994 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.035147 B = 0.001677 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.456051 B =16693.188201 C =16937.081508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.076 3.924 3 H 0.085 0.915 4 O -0.350 6.350 5 C 0.098 3.902 6 C -0.044 4.044 7 C -0.149 4.149 8 C 0.096 3.904 9 N -0.483 5.483 10 C 0.095 3.905 11 C -0.151 4.151 12 C 0.529 3.471 13 O -0.522 6.522 14 N -0.612 5.612 15 C 0.094 3.906 16 C -0.115 4.115 17 C -0.078 4.078 18 C -0.129 4.129 19 C 0.169 3.831 20 N -0.728 5.728 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.119 3.881 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.137 0.863 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.137 0.863 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.045 0.955 46 H 0.022 0.978 47 H 0.023 0.977 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.071 0.929 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.349 -1.055 27.148 27.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 H 0.103 0.897 4 O -0.268 6.268 5 C 0.021 3.979 6 C -0.052 4.052 7 C -0.169 4.169 8 C -0.060 4.060 9 N -0.192 5.192 10 C -0.062 4.062 11 C -0.171 4.171 12 C 0.316 3.684 13 O -0.398 6.398 14 N -0.347 5.347 15 C -0.029 4.029 16 C -0.153 4.153 17 C -0.079 4.079 18 C -0.186 4.186 19 C 0.041 3.959 20 N -0.372 5.372 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.003 4.003 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.155 0.845 36 H 0.175 0.825 37 H 0.175 0.825 38 H 0.154 0.846 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.040 0.960 47 H 0.040 0.960 48 H 0.219 0.781 49 H 0.064 0.936 50 H 0.089 0.911 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.085 -2.381 27.853 28.124 hybrid contribution -0.416 1.137 -1.736 2.116 sum 2.669 -1.243 26.118 26.283 Atomic orbital electron populations 1.22265 0.93193 1.04138 1.03369 1.21874 0.95375 0.96105 0.85178 0.89719 1.88126 1.86605 1.33567 1.18465 1.21426 1.00191 0.91651 0.84604 1.19961 0.93708 0.96776 0.94756 1.22118 0.95875 0.99861 0.99049 1.22793 0.99763 0.93059 0.90428 1.67673 1.03391 1.19402 1.28748 1.22786 0.91988 0.95366 0.96026 1.22090 1.01026 0.98195 0.95771 1.19886 0.79536 0.85957 0.83061 1.90730 1.42195 1.21300 1.85533 1.48420 1.63523 1.17258 1.05547 1.22290 0.98663 0.83384 0.98543 1.22665 1.04310 0.97111 0.91248 1.21982 0.96052 0.94425 0.95402 1.21668 0.94961 1.01207 1.00770 1.20552 0.93905 0.95055 0.86419 1.42298 1.32143 1.56673 1.06129 1.19232 1.08443 1.23822 0.85493 0.91203 1.24709 0.97773 1.00240 0.98163 1.69647 1.18725 1.35414 1.34467 0.86198 0.77801 0.76971 0.85262 1.21755 1.21811 1.20795 1.22368 0.98961 0.98036 0.80947 0.91001 0.91141 0.90289 0.91601 0.91692 0.84526 0.82476 0.82519 0.84557 0.91230 0.91605 0.89318 0.90024 0.91097 0.92618 0.93640 0.96033 0.95954 0.78126 0.93553 0.91102 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 9.41 37.16 0.35 -1.02 16 2 C 0.08 0.75 2.53 -27.88 -0.07 0.68 16 3 H 0.09 0.63 7.59 -51.93 -0.39 0.23 16 4 O -0.35 -3.97 9.52 -54.94 -0.52 -4.49 16 5 C 0.10 0.75 5.92 36.01 0.21 0.96 16 6 C -0.04 -0.37 5.55 -104.32 -0.58 -0.95 16 7 C -0.15 -1.23 9.82 -39.44 -0.39 -1.62 16 8 C 0.10 0.81 11.18 -17.55 -0.20 0.62 16 9 N -0.48 -4.75 10.36 -13.25 -0.14 -4.89 16 10 C 0.10 0.77 11.18 -17.55 -0.20 0.58 16 11 C -0.15 -1.16 9.82 -39.44 -0.39 -1.55 16 12 C 0.53 7.26 7.17 -10.99 -0.08 7.19 16 13 O -0.52 -9.48 16.83 -14.15 -0.24 -9.72 16 14 N -0.61 -7.70 3.31 -170.38 -0.56 -8.26 16 15 C 0.09 0.97 5.87 -3.06 -0.02 0.95 16 16 C -0.12 -1.52 5.38 -24.90 -0.13 -1.65 16 17 C -0.08 -1.15 0.62 -152.25 -0.09 -1.24 16 18 C -0.13 -1.90 8.41 37.16 0.31 -1.59 16 19 C 0.17 3.18 5.23 -4.04 -0.02 3.16 16 20 N -0.73 -17.19 5.18 -59.91 -0.31 -17.50 16 21 C -0.24 -6.44 9.99 -15.06 -0.15 -6.59 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.15 13.06 55.49 0.72 -26.42 16 25 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 C 0.12 1.66 5.83 -2.41 -0.01 1.65 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.42 7.78 -51.93 -0.40 0.01 16 32 H 0.08 0.56 5.75 -51.93 -0.30 0.26 16 33 H 0.07 0.36 7.74 -51.92 -0.40 -0.04 16 34 H 0.06 0.40 8.05 -51.93 -0.42 -0.02 16 35 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 36 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.07 0.60 5.90 -51.93 -0.31 0.30 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 1.22 7.95 -51.93 -0.41 0.81 16 42 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 43 H 0.07 1.18 7.20 -51.93 -0.37 0.80 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.04 0.59 7.89 -51.92 -0.41 0.18 16 46 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.38 9.39 6.37 -40.82 -0.26 9.13 16 49 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 50 H 0.07 0.99 8.01 -51.93 -0.42 0.57 16 51 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 LS Contribution 413.86 15.07 6.24 6.24 Total: -1.00 -34.43 413.86 -9.66 -44.09 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.28 Total: 4.95 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -1.55 Total: -0.89 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -0.29 Total: -57.07 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.76 Total: -14.21 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.43 -9.66 -44.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754705519.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.078 kcal (2) G-P(sol) polarization free energy of solvation -34.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds