Wall clock time and date at job start Wed Apr 1 2020 04:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47139 * 2 1 4 4 O 1.42904 * 109.47444 * 119.99749 * 2 1 3 5 5 C 1.42900 * 113.99903 * 270.00261 * 4 2 1 6 6 C 1.50700 * 109.47350 * 179.97438 * 5 4 2 7 7 C 1.38650 * 120.79003 * 89.99606 * 6 5 4 8 8 C 1.38196 * 119.16162 * 179.74839 * 7 6 5 9 9 N 1.31868 * 120.76677 * 0.25587 * 8 7 6 10 10 C 1.31868 * 121.72614 * 359.97438 * 9 8 7 11 11 C 1.38206 * 120.76570 * 359.97438 * 10 9 8 12 12 C 1.50699 * 109.47392 * 239.99628 * 2 1 3 13 13 O 1.21278 * 120.00423 * 250.06747 * 12 2 1 14 14 N 1.34778 * 119.99552 * 70.06808 * 12 2 1 15 15 C 1.47020 * 125.65187 * 5.23872 * 14 12 2 16 16 C 1.54328 * 107.27065 * 181.02672 * 15 14 12 17 17 C 1.55148 * 102.94271 * 22.19502 * 16 15 14 18 18 C 1.53003 * 111.00734 * 82.57384 * 17 16 15 19 19 C 1.52999 * 111.00301 * 206.42534 * 17 16 15 20 20 N 1.46504 * 109.46921 * 298.54260 * 19 17 16 21 21 C 1.36944 * 119.99771 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00005 * 0.02562 * 21 20 19 23 23 C 1.38814 * 119.99705 * 179.97438 * 21 20 19 24 24 N 1.31617 * 120.00013 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99786 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47353 * 90.00462 * 25 23 21 27 27 H 1.48506 * 109.47005 * 210.00380 * 25 23 21 28 28 H 1.48505 * 109.47233 * 330.00325 * 25 23 21 29 29 C 1.47429 * 125.64555 * 184.94152 * 14 12 2 30 30 H 1.08997 * 109.46922 * 174.96894 * 1 2 3 31 31 H 1.09004 * 109.47190 * 294.96402 * 1 2 3 32 32 H 1.08994 * 109.47136 * 54.96642 * 1 2 3 33 33 H 1.09008 * 109.47280 * 59.99749 * 5 4 2 34 34 H 1.08997 * 109.47412 * 300.00292 * 5 4 2 35 35 H 1.08003 * 120.41568 * 0.02688 * 7 6 5 36 36 H 1.08004 * 119.62061 * 180.27783 * 8 7 6 37 37 H 1.07999 * 119.61728 * 179.97438 * 10 9 8 38 38 H 1.07995 * 120.41969 * 180.02562 * 11 10 9 39 39 H 1.09004 * 109.88649 * 300.44337 * 15 14 12 40 40 H 1.09004 * 109.88048 * 61.45567 * 15 14 12 41 41 H 1.08999 * 110.71594 * 140.55954 * 16 15 14 42 42 H 1.09002 * 110.71951 * 263.65219 * 16 15 14 43 43 H 1.08996 * 109.47197 * 61.44763 * 18 17 16 44 44 H 1.08994 * 109.47249 * 181.45203 * 18 17 16 45 45 H 1.09008 * 109.46927 * 301.45559 * 18 17 16 46 46 H 1.08994 * 109.47777 * 58.54524 * 19 17 16 47 47 H 1.09002 * 109.47088 * 178.55039 * 19 17 16 48 48 H 0.96994 * 120.00100 * 0.02562 * 20 19 17 49 49 H 0.97001 * 119.99766 * 179.97438 * 24 23 21 50 50 H 1.09006 * 110.35928 * 274.73745 * 29 14 12 51 51 H 1.08993 * 110.37255 * 37.06075 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7004 -0.6282 3.4614 7 6 4.0591 -0.8121 3.6676 8 6 4.4807 -1.5579 4.7520 9 7 3.6078 -2.0951 5.5816 10 6 2.3085 -1.9448 5.4140 11 6 1.8127 -1.2114 4.3528 12 6 2.0324 -0.7105 -1.2304 13 8 2.5721 -1.7917 -1.1284 14 7 1.8819 -0.1442 -2.4441 15 6 1.3482 1.2013 -2.7017 16 6 1.3386 1.4053 -4.2314 17 6 1.3372 -0.0476 -4.7757 18 6 -0.0785 -0.6278 -4.7867 19 6 1.9644 -0.1116 -6.1698 20 7 1.1792 0.7075 -7.0966 21 6 1.5530 0.8037 -8.4105 22 1 2.4264 0.2755 -8.7635 23 6 0.8087 1.5793 -9.2888 24 7 -0.2559 2.2226 -8.8586 25 14 1.3181 1.7100 -11.0812 26 1 0.6579 0.6340 -11.8632 27 1 0.9092 3.0334 -11.6168 28 1 2.7923 1.5666 -11.1886 29 6 2.2308 -0.7691 -3.7330 30 1 -0.3633 -1.0237 -0.0901 31 1 -0.3634 0.4337 0.9317 32 1 -0.3633 0.5899 -0.8414 33 1 1.2538 0.6548 2.5589 34 1 2.9319 0.9515 2.0450 35 1 4.7789 -0.3743 2.9918 36 1 5.5375 -1.7021 4.9222 37 1 1.6239 -2.4002 6.1142 38 1 0.7476 -1.0915 4.2211 39 1 0.3335 1.2788 -2.3111 40 1 1.9852 1.9494 -2.2296 41 1 0.4389 1.9352 -4.5441 42 1 2.2316 1.9403 -4.5548 43 1 -0.7109 -0.0306 -5.4435 44 1 -0.0472 -1.6556 -5.1483 45 1 -0.4861 -0.6106 -3.7758 46 1 2.9857 0.2667 -6.1264 47 1 1.9740 -1.1448 -6.5168 48 1 0.3951 1.1822 -6.7794 49 1 -0.7757 2.7649 -9.4722 50 1 3.2853 -0.6096 -3.9586 51 1 2.0036 -1.8348 -3.7118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754705519.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:19 Heat of formation + Delta-G solvation = -50.424142 kcal Electronic energy + Delta-G solvation = -30138.098466 eV Core-core repulsion = 26037.065131 eV Total energy + Delta-G solvation = -4101.033335 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.56138 -41.09522 -39.69836 -38.45524 -36.49677 -34.65510 -34.21523 -32.50435 -32.15832 -31.65871 -30.58097 -28.05320 -27.89793 -27.30155 -25.34470 -24.42995 -24.15037 -23.59160 -22.96388 -20.54764 -20.12981 -19.18354 -18.53979 -17.76998 -17.55963 -17.37226 -17.15334 -16.70462 -16.51403 -16.36909 -16.03798 -15.54778 -15.30672 -15.21585 -14.85366 -14.80094 -14.60988 -14.50250 -14.33577 -13.99141 -13.84907 -13.62264 -13.43183 -13.19378 -13.04314 -12.97899 -12.87258 -12.81706 -12.61709 -12.43987 -12.27730 -12.11748 -12.06636 -11.59756 -11.51814 -11.44407 -11.11371 -10.91479 -10.76534 -10.54370 -10.48042 -10.10029 -9.69224 -8.94760 -7.92597 -5.19375 0.12416 0.18802 1.49220 1.49746 1.50314 1.58349 1.66974 2.57763 2.63579 3.04009 3.28173 3.41465 3.56529 3.58479 3.60930 3.72919 3.76273 3.85572 3.92028 4.03944 4.10846 4.19428 4.21500 4.24395 4.32903 4.35010 4.39343 4.42530 4.56461 4.63924 4.68962 4.74926 4.78782 4.80988 4.87063 4.87532 4.97644 5.00391 5.05648 5.08719 5.17328 5.22240 5.28357 5.33404 5.33897 5.46114 5.53114 5.74433 5.99224 6.30195 6.46478 6.99127 7.06575 7.38281 8.13104 8.39203 9.30466 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.035147 B = 0.001677 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.456051 B =16693.188201 C =16937.081508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.081 3.919 3 H 0.118 0.882 4 O -0.381 6.381 5 C 0.095 3.905 6 C -0.060 4.060 7 C -0.160 4.160 8 C 0.082 3.918 9 N -0.512 5.512 10 C 0.083 3.917 11 C -0.154 4.154 12 C 0.523 3.477 13 O -0.577 6.577 14 N -0.608 5.608 15 C 0.099 3.901 16 C -0.113 4.113 17 C -0.070 4.070 18 C -0.121 4.121 19 C 0.168 3.832 20 N -0.734 5.734 21 C -0.245 4.245 22 H 0.071 0.929 23 C -0.069 4.069 24 N -0.964 5.964 25 Si 0.968 3.032 26 H -0.290 1.290 27 H -0.295 1.295 28 H -0.273 1.273 29 C 0.124 3.876 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.148 0.852 36 H 0.174 0.826 37 H 0.179 0.821 38 H 0.159 0.841 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.050 0.950 44 H 0.047 0.953 45 H 0.067 0.933 46 H 0.023 0.977 47 H 0.015 0.985 48 H 0.379 0.621 49 H 0.251 0.749 50 H 0.069 0.931 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 0.269 28.441 28.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.020 3.980 3 H 0.136 0.864 4 O -0.300 6.300 5 C 0.020 3.980 6 C -0.068 4.068 7 C -0.179 4.179 8 C -0.074 4.074 9 N -0.222 5.222 10 C -0.073 4.073 11 C -0.173 4.173 12 C 0.312 3.688 13 O -0.457 6.457 14 N -0.342 5.342 15 C -0.023 4.023 16 C -0.151 4.151 17 C -0.071 4.071 18 C -0.179 4.179 19 C 0.041 3.959 20 N -0.378 5.378 21 C -0.376 4.376 22 H 0.089 0.911 23 C -0.262 4.262 24 N -0.615 5.615 25 Si 0.797 3.203 26 H -0.218 1.218 27 H -0.221 1.221 28 H -0.198 1.198 29 C 0.001 3.999 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.166 0.834 36 H 0.192 0.808 37 H 0.196 0.804 38 H 0.176 0.824 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.041 0.959 47 H 0.033 0.967 48 H 0.212 0.788 49 H 0.060 0.940 50 H 0.087 0.913 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.732 -1.047 29.161 29.307 hybrid contribution -0.254 0.667 -2.112 2.229 sum 2.478 -0.380 27.049 27.165 Atomic orbital electron populations 1.22268 0.91521 1.03355 1.05336 1.21946 0.96383 0.96640 0.82981 0.86401 1.88088 1.86968 1.35440 1.19549 1.21629 1.01993 0.91256 0.83141 1.20270 0.93962 0.97168 0.95394 1.22342 0.96456 0.99938 0.99199 1.23137 1.00602 0.93107 0.90519 1.67686 1.04390 1.20395 1.29699 1.23223 0.91890 0.95481 0.96741 1.22372 1.02143 0.97529 0.95266 1.20735 0.78475 0.85457 0.84156 1.90703 1.44771 1.23839 1.86339 1.48450 1.63046 1.17921 1.04825 1.22421 1.00858 0.82616 0.96367 1.22600 1.03638 0.95372 0.93498 1.21789 0.95835 0.96230 0.93276 1.21580 0.94546 1.00214 1.01525 1.20642 0.93674 0.93624 0.87982 1.42406 1.32380 1.57091 1.05892 1.19591 1.08093 1.22952 0.87012 0.91109 1.25430 0.98198 1.00695 1.01874 1.69780 1.19817 1.36423 1.35440 0.85230 0.77816 0.76446 0.80782 1.21768 1.22119 1.19781 1.22164 0.98599 0.97413 0.81766 0.93059 0.88483 0.89073 0.88968 0.90203 0.83417 0.80846 0.80435 0.82382 0.88589 0.88640 0.89844 0.90926 0.93116 0.93411 0.91415 0.95944 0.96714 0.78750 0.94035 0.91286 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 9.41 71.98 0.68 -1.38 16 2 C 0.08 1.36 2.53 29.85 0.08 1.43 16 3 H 0.12 1.17 7.59 -2.39 -0.02 1.15 16 4 O -0.38 -7.81 9.52 -130.14 -1.24 -9.05 16 5 C 0.10 1.17 5.92 71.24 0.42 1.59 16 6 C -0.06 -0.92 5.55 -19.67 -0.11 -1.03 16 7 C -0.16 -2.50 9.82 22.36 0.22 -2.28 16 8 C 0.08 1.37 11.18 84.68 0.95 2.32 16 9 N -0.51 -9.90 10.36 -195.85 -2.03 -11.93 16 10 C 0.08 1.27 11.18 84.68 0.95 2.22 16 11 C -0.15 -2.11 9.82 22.36 0.22 -1.89 16 12 C 0.52 13.51 7.17 87.66 0.63 14.14 16 13 O -0.58 -21.00 16.83 15.82 0.27 -20.74 16 14 N -0.61 -14.06 3.31 -811.34 -2.69 -16.74 16 15 C 0.10 1.69 5.87 86.73 0.51 2.20 16 16 C -0.11 -2.78 5.38 31.78 0.17 -2.61 16 17 C -0.07 -2.03 0.62 -50.72 -0.03 -2.07 16 18 C -0.12 -3.51 8.41 71.98 0.61 -2.91 16 19 C 0.17 6.35 5.23 86.38 0.45 6.80 16 20 N -0.73 -34.94 5.18 -343.44 -1.78 -36.72 16 21 C -0.24 -13.22 9.99 84.03 0.84 -12.38 16 22 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 23 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 24 N -0.96 -56.46 13.06 21.65 0.28 -56.17 16 25 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 27 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 28 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 29 C 0.12 3.38 5.83 86.93 0.51 3.89 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 0.70 7.78 -2.38 -0.02 0.68 16 32 H 0.09 0.88 5.75 -2.39 -0.01 0.87 16 33 H 0.09 0.62 7.74 -2.38 -0.02 0.60 16 34 H 0.08 0.72 8.05 -2.39 -0.02 0.70 16 35 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 36 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 37 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16 38 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.10 1.21 5.90 -2.38 -0.01 1.20 16 40 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 2.17 7.95 -2.39 -0.02 2.16 16 42 H 0.07 1.93 8.04 -2.39 -0.02 1.91 16 43 H 0.05 1.68 7.20 -2.39 -0.02 1.66 16 44 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.07 1.64 7.89 -2.38 -0.02 1.62 16 46 H 0.02 0.86 8.10 -2.39 -0.02 0.84 16 47 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.38 18.74 6.37 -92.71 -0.59 18.14 16 49 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 50 H 0.07 1.91 8.01 -2.38 -0.02 1.89 16 51 H 0.07 1.96 8.01 -2.39 -0.02 1.94 16 Total: -1.00 -76.18 413.86 2.72 -73.46 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.33 Total: 26.08 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 7.55 Total: 4.67 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -6.21 Total: -121.57 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.97 Total: -29.78 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -76.18 2.72 -73.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754705519.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.039 kcal (2) G-P(sol) polarization free energy of solvation -76.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds