Wall clock time and date at job start Wed Apr 1 2020 04:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47668 * 2 1 4 4 O 1.42901 * 109.47024 * 120.00062 * 2 1 3 5 5 C 1.42904 * 114.00032 * 269.99812 * 4 2 1 6 6 C 1.50702 * 109.47223 * 179.97438 * 5 4 2 7 7 C 1.38650 * 120.78879 * 269.97623 * 6 5 4 8 8 C 1.38203 * 119.16168 * 180.02562 * 7 6 5 9 9 N 1.31874 * 120.76322 * 359.97438 * 8 7 6 10 10 C 1.31870 * 121.72652 * 0.02562 * 9 8 7 11 11 C 1.38200 * 120.76264 * 0.02562 * 10 9 8 12 12 C 1.50705 * 109.47137 * 239.99640 * 2 1 3 13 13 O 1.21278 * 119.99925 * 245.00205 * 12 2 1 14 14 N 1.34775 * 119.99839 * 65.00131 * 12 2 1 15 15 C 1.47492 * 127.03435 * 0.03020 * 14 12 2 16 16 C 1.54003 * 107.08352 * 154.51262 * 15 14 12 17 17 C 1.54615 * 105.04460 * 1.30353 * 16 15 14 18 18 C 1.52998 * 110.73861 * 263.51171 * 17 16 15 19 19 C 1.53003 * 110.73807 * 140.36699 * 17 16 15 20 20 N 1.46507 * 109.46946 * 61.45295 * 19 17 16 21 21 C 1.36936 * 119.99571 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00297 * 0.02562 * 21 20 19 23 23 C 1.38816 * 119.99447 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00315 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99785 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47061 * 89.99940 * 25 23 21 27 27 H 1.48496 * 109.47022 * 210.00367 * 25 23 21 28 28 H 1.48499 * 109.47064 * 330.00441 * 25 23 21 29 29 C 1.48118 * 127.03384 * 179.70387 * 14 12 2 30 30 H 1.09006 * 109.46810 * 60.00152 * 1 2 3 31 31 H 1.08992 * 109.47668 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47161 * 300.00762 * 1 2 3 33 33 H 1.09004 * 109.46752 * 60.00093 * 5 4 2 34 34 H 1.08999 * 109.46775 * 300.00035 * 5 4 2 35 35 H 1.08002 * 120.42196 * 0.04097 * 7 6 5 36 36 H 1.07996 * 119.61854 * 180.25810 * 8 7 6 37 37 H 1.08001 * 119.61693 * 179.97438 * 10 9 8 38 38 H 1.08004 * 120.42054 * 179.97438 * 11 10 9 39 39 H 1.08999 * 109.90878 * 273.87757 * 15 14 12 40 40 H 1.08998 * 109.91019 * 34.95744 * 15 14 12 41 41 H 1.09001 * 110.32153 * 120.19558 * 16 15 14 42 42 H 1.08998 * 110.32259 * 242.30803 * 16 15 14 43 43 H 1.08992 * 109.47163 * 58.54721 * 18 17 16 44 44 H 1.09003 * 109.46921 * 178.55014 * 18 17 16 45 45 H 1.09000 * 109.47163 * 298.54803 * 18 17 16 46 46 H 1.08999 * 109.47139 * 181.44955 * 19 17 16 47 47 H 1.09000 * 109.47298 * 301.45455 * 19 17 16 48 48 H 0.96994 * 120.00158 * 359.97438 * 20 19 17 49 49 H 0.96997 * 120.00057 * 179.97438 * 24 23 21 50 50 H 1.08996 * 110.66051 * 337.77627 * 29 14 12 51 51 H 1.09005 * 110.65479 * 100.89187 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 0.1829 2.2941 6 6 2.7002 -0.6284 3.4614 7 6 1.8126 -1.2082 4.3550 8 6 2.3081 -1.9450 5.4141 9 7 3.6074 -2.0995 5.5789 10 6 4.4804 -1.5627 4.7491 11 6 4.0589 -0.8120 3.6680 12 6 2.0323 -0.7105 -1.2305 13 8 2.6529 -1.7468 -1.1214 14 7 1.7919 -0.1943 -2.4520 15 6 1.0595 1.0475 -2.7632 16 6 1.5772 1.5491 -4.1241 17 6 2.6178 0.4962 -4.5705 18 6 4.0337 0.9441 -4.2027 19 6 2.5090 0.2303 -6.0733 20 7 2.7842 1.4669 -6.8092 21 6 2.7451 1.4720 -8.1780 22 1 2.5111 0.5647 -8.7150 23 6 3.0053 2.6439 -8.8753 24 7 3.2900 3.7497 -8.2208 25 14 2.9528 2.6509 -10.7425 26 1 1.5778 2.9785 -11.1978 27 1 3.9016 3.6690 -11.2606 28 1 3.3372 1.3106 -11.2536 29 6 2.2148 -0.7546 -3.7563 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5140 0.8899 33 1 1.2537 0.6547 2.5588 34 1 2.9320 0.9513 2.0450 35 1 0.7475 -1.0858 4.2250 36 1 1.6233 -2.4033 6.1121 37 1 5.5370 -1.7108 4.9167 38 1 4.7787 -0.3745 2.9920 39 1 -0.0092 0.8426 -2.8251 40 1 1.2501 1.7940 -1.9922 41 1 0.7601 1.6027 -4.8436 42 1 2.0480 2.5259 -4.0134 43 1 4.0977 1.0982 -3.1256 44 1 4.7471 0.1766 -4.5030 45 1 4.2651 1.8766 -4.7175 46 1 3.2329 -0.5322 -6.3607 47 1 1.5029 -0.1166 -6.3091 48 1 2.9940 2.2818 -6.3269 49 1 3.4722 4.5684 -8.7080 50 1 3.0677 -1.4215 -3.6300 51 1 1.3867 -1.2744 -4.2382 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754705520.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:24 Heat of formation + Delta-G solvation = -27.830246 kcal Electronic energy + Delta-G solvation = -30202.528441 eV Core-core repulsion = 26102.474851 eV Total energy + Delta-G solvation = -4100.053590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.65630 -40.35213 -38.73399 -37.45647 -34.92196 -33.85687 -32.84706 -31.58632 -31.40205 -30.15055 -29.52153 -27.31035 -26.85304 -25.67250 -24.23886 -23.84178 -22.73708 -22.47614 -22.34201 -19.58900 -18.81889 -17.83703 -17.25990 -17.00466 -16.89292 -16.60753 -16.04343 -15.97034 -15.41953 -15.29446 -14.69112 -14.29919 -14.17328 -14.03906 -14.01100 -13.85271 -13.71427 -13.36148 -13.18292 -12.94887 -12.75483 -12.51816 -12.49184 -12.30073 -12.15221 -11.94074 -11.66606 -11.62066 -11.31407 -11.05407 -10.84613 -10.57639 -10.41298 -10.34141 -10.28826 -10.13841 -10.00088 -9.86531 -9.72344 -9.59347 -9.51567 -8.90911 -8.70077 -6.95207 -5.80398 -3.08423 0.73611 0.77186 2.51074 2.54667 3.31557 3.41177 3.47032 3.48261 3.67424 4.09801 4.15506 4.27065 4.34398 4.52110 4.55110 4.63093 4.65861 4.69890 4.73931 4.79812 4.87794 4.93229 5.02044 5.19605 5.22407 5.23400 5.29739 5.38101 5.40406 5.46358 5.55621 5.55968 5.70759 5.77126 5.86698 5.89461 5.90671 5.91816 6.10750 6.17365 6.25887 6.30359 6.39077 6.48847 6.60670 6.64525 6.73557 6.80722 7.47024 7.59037 7.67505 8.08515 8.38811 9.50580 10.07639 10.42813 11.42478 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028968 B = 0.001732 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.365954 B =16164.274856 C =16391.660025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.075 3.925 3 H 0.087 0.913 4 O -0.349 6.349 5 C 0.098 3.902 6 C -0.044 4.044 7 C -0.151 4.151 8 C 0.095 3.905 9 N -0.483 5.483 10 C 0.097 3.903 11 C -0.149 4.149 12 C 0.533 3.467 13 O -0.523 6.523 14 N -0.615 5.615 15 C 0.098 3.902 16 C -0.120 4.120 17 C -0.078 4.078 18 C -0.128 4.128 19 C 0.168 3.832 20 N -0.728 5.728 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.117 3.883 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.136 0.864 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.137 0.863 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.042 0.958 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.022 0.978 47 H 0.022 0.978 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.084 0.916 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.647 -4.887 25.664 26.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 H 0.105 0.895 4 O -0.267 6.267 5 C 0.021 3.979 6 C -0.052 4.052 7 C -0.171 4.171 8 C -0.062 4.062 9 N -0.192 5.192 10 C -0.060 4.060 11 C -0.169 4.169 12 C 0.320 3.680 13 O -0.398 6.398 14 N -0.351 5.351 15 C -0.025 4.025 16 C -0.158 4.158 17 C -0.080 4.080 18 C -0.186 4.186 19 C 0.040 3.960 20 N -0.373 5.373 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.005 4.005 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.154 0.846 36 H 0.175 0.825 37 H 0.175 0.825 38 H 0.155 0.845 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.040 0.960 47 H 0.040 0.960 48 H 0.219 0.781 49 H 0.064 0.936 50 H 0.102 0.898 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.965 -6.239 26.377 27.555 hybrid contribution -0.380 1.234 -1.720 2.151 sum -5.345 -5.005 24.657 25.721 Atomic orbital electron populations 1.22293 0.93337 1.04031 1.03472 1.21849 0.95273 0.96229 0.85225 0.89520 1.88119 1.86632 1.33537 1.18437 1.21427 1.00192 0.91664 0.84573 1.19955 0.93712 0.96786 0.94731 1.22081 1.00985 0.98289 0.95779 1.22780 0.91998 0.95373 0.96053 1.67675 1.03380 1.19556 1.28611 1.22798 0.99770 0.93008 0.90431 1.22132 0.95898 0.99770 0.99052 1.19842 0.79979 0.85342 0.82843 1.90732 1.40080 1.23349 1.85650 1.48715 1.55615 1.25430 1.05293 1.22312 0.96061 0.85775 0.98393 1.22562 0.99536 0.99195 0.94526 1.21786 0.95740 0.93955 0.96488 1.21698 0.94714 1.02356 0.99787 1.20590 0.97639 0.90798 0.86959 1.42314 1.84706 1.06874 1.03384 1.19231 1.39797 0.95215 0.82747 0.91201 1.24714 1.02605 0.95750 0.97841 1.69645 1.54507 0.99889 1.34211 0.86198 0.77292 0.77069 0.85683 1.21767 1.21814 1.20789 1.22487 1.00380 0.96228 0.81416 0.90302 0.91020 0.91231 0.91630 0.91631 0.84592 0.82544 0.82454 0.84474 0.91275 0.91211 0.89531 0.90186 0.93844 0.92744 0.91218 0.96015 0.96042 0.78104 0.93550 0.89791 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 9.40 37.16 0.35 -0.96 16 2 C 0.08 0.75 2.50 -27.88 -0.07 0.68 16 3 H 0.09 0.67 7.33 -51.93 -0.38 0.29 16 4 O -0.35 -3.99 9.51 -55.09 -0.52 -4.52 16 5 C 0.10 0.77 5.92 36.01 0.21 0.98 16 6 C -0.04 -0.38 5.55 -104.32 -0.58 -0.96 16 7 C -0.15 -1.18 9.82 -39.44 -0.39 -1.56 16 8 C 0.09 0.78 11.18 -17.55 -0.20 0.58 16 9 N -0.48 -4.82 10.36 -13.25 -0.14 -4.96 16 10 C 0.10 0.84 11.18 -17.55 -0.20 0.64 16 11 C -0.15 -1.27 9.82 -39.44 -0.39 -1.66 16 12 C 0.53 7.32 7.27 -10.98 -0.08 7.24 16 13 O -0.52 -9.49 16.72 -14.30 -0.24 -9.73 16 14 N -0.62 -7.67 3.21 -169.98 -0.55 -8.22 16 15 C 0.10 0.99 5.39 -2.98 -0.02 0.98 16 16 C -0.12 -1.59 5.51 -25.36 -0.14 -1.73 16 17 C -0.08 -1.17 0.64 -152.82 -0.10 -1.27 16 18 C -0.13 -1.99 8.28 37.16 0.31 -1.68 16 19 C 0.17 3.16 5.10 -4.04 -0.02 3.14 16 20 N -0.73 -17.27 5.15 -59.90 -0.31 -17.57 16 21 C -0.24 -6.44 9.99 -15.06 -0.15 -6.59 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.27 13.06 55.49 0.72 -26.55 16 25 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 C 0.12 1.61 5.97 -2.32 -0.01 1.60 16 30 H 0.08 0.52 5.72 -51.93 -0.30 0.23 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 33 H 0.07 0.37 7.83 -51.93 -0.41 -0.04 16 34 H 0.07 0.43 8.05 -51.93 -0.42 0.02 16 35 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 39 H 0.07 0.60 7.31 -51.93 -0.38 0.22 16 40 H 0.07 0.57 7.38 -51.93 -0.38 0.19 16 41 H 0.09 1.24 7.85 -51.93 -0.41 0.83 16 42 H 0.08 1.09 7.87 -51.93 -0.41 0.68 16 43 H 0.04 0.61 8.08 -51.93 -0.42 0.20 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.21 7.11 -51.93 -0.37 0.84 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.02 0.41 8.13 -51.93 -0.42 -0.02 16 48 H 0.38 9.49 6.38 -40.82 -0.26 9.23 16 49 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 50 H 0.08 1.25 7.75 -51.93 -0.40 0.85 16 51 H 0.07 0.97 8.04 -51.93 -0.42 0.56 16 LS Contribution 413.39 15.07 6.23 6.23 Total: -1.00 -34.54 413.39 -9.67 -44.21 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -8.29 Total: 5.24 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.56 Total: -1.04 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.27 Total: -57.30 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.76 Total: -14.25 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.54 -9.67 -44.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754705520.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.378 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds