Wall clock time and date at job start Wed Apr 1 2020 04:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47668 * 2 1 4 4 O 1.42901 * 109.47024 * 120.00062 * 2 1 3 5 5 C 1.42904 * 114.00032 * 269.99812 * 4 2 1 6 6 C 1.50702 * 109.47223 * 179.97438 * 5 4 2 7 7 C 1.38650 * 120.78879 * 269.97623 * 6 5 4 8 8 C 1.38203 * 119.16168 * 180.02562 * 7 6 5 9 9 N 1.31874 * 120.76322 * 359.97438 * 8 7 6 10 10 C 1.31870 * 121.72652 * 0.02562 * 9 8 7 11 11 C 1.38200 * 120.76264 * 0.02562 * 10 9 8 12 12 C 1.50705 * 109.47137 * 239.99640 * 2 1 3 13 13 O 1.21278 * 119.99925 * 245.00205 * 12 2 1 14 14 N 1.34775 * 119.99839 * 65.00131 * 12 2 1 15 15 C 1.47492 * 127.03435 * 0.03020 * 14 12 2 16 16 C 1.54003 * 107.08352 * 154.51262 * 15 14 12 17 17 C 1.54615 * 105.04460 * 1.30353 * 16 15 14 18 18 C 1.52998 * 110.73861 * 263.51171 * 17 16 15 19 19 C 1.53003 * 110.73807 * 140.36699 * 17 16 15 20 20 N 1.46507 * 109.46946 * 61.45295 * 19 17 16 21 21 C 1.36936 * 119.99571 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00297 * 0.02562 * 21 20 19 23 23 C 1.38816 * 119.99447 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00315 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99785 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47061 * 89.99940 * 25 23 21 27 27 H 1.48496 * 109.47022 * 210.00367 * 25 23 21 28 28 H 1.48499 * 109.47064 * 330.00441 * 25 23 21 29 29 C 1.48118 * 127.03384 * 179.70387 * 14 12 2 30 30 H 1.09006 * 109.46810 * 60.00152 * 1 2 3 31 31 H 1.08992 * 109.47668 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47161 * 300.00762 * 1 2 3 33 33 H 1.09004 * 109.46752 * 60.00093 * 5 4 2 34 34 H 1.08999 * 109.46775 * 300.00035 * 5 4 2 35 35 H 1.08002 * 120.42196 * 0.04097 * 7 6 5 36 36 H 1.07996 * 119.61854 * 180.25810 * 8 7 6 37 37 H 1.08001 * 119.61693 * 179.97438 * 10 9 8 38 38 H 1.08004 * 120.42054 * 179.97438 * 11 10 9 39 39 H 1.08999 * 109.90878 * 273.87757 * 15 14 12 40 40 H 1.08998 * 109.91019 * 34.95744 * 15 14 12 41 41 H 1.09001 * 110.32153 * 120.19558 * 16 15 14 42 42 H 1.08998 * 110.32259 * 242.30803 * 16 15 14 43 43 H 1.08992 * 109.47163 * 58.54721 * 18 17 16 44 44 H 1.09003 * 109.46921 * 178.55014 * 18 17 16 45 45 H 1.09000 * 109.47163 * 298.54803 * 18 17 16 46 46 H 1.08999 * 109.47139 * 181.44955 * 19 17 16 47 47 H 1.09000 * 109.47298 * 301.45455 * 19 17 16 48 48 H 0.96994 * 120.00158 * 359.97438 * 20 19 17 49 49 H 0.96997 * 120.00057 * 179.97438 * 24 23 21 50 50 H 1.08996 * 110.66051 * 337.77627 * 29 14 12 51 51 H 1.09005 * 110.65479 * 100.89187 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 0.1829 2.2941 6 6 2.7002 -0.6284 3.4614 7 6 1.8126 -1.2082 4.3550 8 6 2.3081 -1.9450 5.4141 9 7 3.6074 -2.0995 5.5789 10 6 4.4804 -1.5627 4.7491 11 6 4.0589 -0.8120 3.6680 12 6 2.0323 -0.7105 -1.2305 13 8 2.6529 -1.7468 -1.1214 14 7 1.7919 -0.1943 -2.4520 15 6 1.0595 1.0475 -2.7632 16 6 1.5772 1.5491 -4.1241 17 6 2.6178 0.4962 -4.5705 18 6 4.0337 0.9441 -4.2027 19 6 2.5090 0.2303 -6.0733 20 7 2.7842 1.4669 -6.8092 21 6 2.7451 1.4720 -8.1780 22 1 2.5111 0.5647 -8.7150 23 6 3.0053 2.6439 -8.8753 24 7 3.2900 3.7497 -8.2208 25 14 2.9528 2.6509 -10.7425 26 1 1.5778 2.9785 -11.1978 27 1 3.9016 3.6690 -11.2606 28 1 3.3372 1.3106 -11.2536 29 6 2.2148 -0.7546 -3.7563 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5140 0.8899 33 1 1.2537 0.6547 2.5588 34 1 2.9320 0.9513 2.0450 35 1 0.7475 -1.0858 4.2250 36 1 1.6233 -2.4033 6.1121 37 1 5.5370 -1.7108 4.9167 38 1 4.7787 -0.3745 2.9920 39 1 -0.0092 0.8426 -2.8251 40 1 1.2501 1.7940 -1.9922 41 1 0.7601 1.6027 -4.8436 42 1 2.0480 2.5259 -4.0134 43 1 4.0977 1.0982 -3.1256 44 1 4.7471 0.1766 -4.5030 45 1 4.2651 1.8766 -4.7175 46 1 3.2329 -0.5322 -6.3607 47 1 1.5029 -0.1166 -6.3091 48 1 2.9940 2.2818 -6.3269 49 1 3.4722 4.5684 -8.7080 50 1 3.0677 -1.4215 -3.6300 51 1 1.3867 -1.2744 -4.2382 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754705520.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:23 Heat of formation + Delta-G solvation = -49.303479 kcal Electronic energy + Delta-G solvation = -30203.459591 eV Core-core repulsion = 26102.474851 eV Total energy + Delta-G solvation = -4100.984739 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.53255 -41.09441 -39.70064 -38.44163 -36.49231 -34.67964 -34.20846 -32.51238 -32.16096 -31.57738 -30.62786 -28.04104 -27.89508 -27.27074 -25.36093 -24.43277 -24.13910 -23.63128 -22.96977 -20.57066 -20.06655 -19.16430 -18.59754 -17.74946 -17.56901 -17.40503 -17.12529 -16.58600 -16.54654 -16.28315 -16.06003 -15.55423 -15.34072 -15.10349 -14.93147 -14.78890 -14.61338 -14.50725 -14.38334 -13.97334 -13.80722 -13.68018 -13.31608 -13.28245 -13.03981 -12.93963 -12.83963 -12.81570 -12.50830 -12.46481 -12.29543 -12.12696 -12.04706 -11.60874 -11.53539 -11.41348 -11.10389 -10.90980 -10.76757 -10.53657 -10.48237 -10.10322 -9.73723 -8.94601 -7.92397 -5.19279 0.12090 0.18481 1.49586 1.50188 1.51445 1.58470 1.65738 2.57949 2.63014 3.03762 3.30202 3.41788 3.56985 3.62354 3.64525 3.72530 3.76027 3.84586 3.92076 4.04150 4.10454 4.19112 4.23393 4.28294 4.34448 4.37202 4.38248 4.42051 4.61673 4.66298 4.68713 4.71740 4.77509 4.82326 4.84714 4.87225 4.97320 4.99065 5.03353 5.05849 5.15961 5.21264 5.30610 5.33165 5.37797 5.45577 5.53490 5.74115 5.99138 6.30301 6.49854 6.98773 7.07464 7.38185 8.13740 8.38915 9.30807 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028968 B = 0.001732 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.365954 B =16164.274856 C =16391.660025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.080 3.920 3 H 0.116 0.884 4 O -0.381 6.381 5 C 0.096 3.904 6 C -0.060 4.060 7 C -0.152 4.152 8 C 0.083 3.917 9 N -0.511 5.511 10 C 0.083 3.917 11 C -0.161 4.161 12 C 0.526 3.474 13 O -0.578 6.578 14 N -0.611 5.611 15 C 0.103 3.897 16 C -0.117 4.117 17 C -0.072 4.072 18 C -0.120 4.120 19 C 0.168 3.832 20 N -0.736 5.736 21 C -0.243 4.243 22 H 0.072 0.928 23 C -0.071 4.071 24 N -0.965 5.965 25 Si 0.968 3.032 26 H -0.286 1.286 27 H -0.297 1.297 28 H -0.274 1.274 29 C 0.121 3.879 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.160 0.840 36 H 0.180 0.820 37 H 0.174 0.826 38 H 0.146 0.854 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.044 0.956 45 H 0.047 0.953 46 H 0.014 0.986 47 H 0.028 0.972 48 H 0.378 0.622 49 H 0.250 0.750 50 H 0.068 0.932 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.511 -4.248 26.685 28.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.019 3.981 3 H 0.133 0.867 4 O -0.300 6.300 5 C 0.020 3.980 6 C -0.068 4.068 7 C -0.172 4.172 8 C -0.073 4.073 9 N -0.221 5.221 10 C -0.073 4.073 11 C -0.181 4.181 12 C 0.315 3.685 13 O -0.457 6.457 14 N -0.345 5.345 15 C -0.019 4.019 16 C -0.155 4.155 17 C -0.073 4.073 18 C -0.178 4.178 19 C 0.041 3.959 20 N -0.379 5.379 21 C -0.375 4.375 22 H 0.090 0.910 23 C -0.264 4.264 24 N -0.616 5.616 25 Si 0.798 3.202 26 H -0.214 1.214 27 H -0.224 1.224 28 H -0.199 1.199 29 C -0.002 4.002 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.178 0.822 36 H 0.197 0.803 37 H 0.191 0.809 38 H 0.164 0.836 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.032 0.968 47 H 0.046 0.954 48 H 0.211 0.789 49 H 0.059 0.941 50 H 0.086 0.914 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.856 -5.608 27.404 28.800 hybrid contribution 0.216 0.965 -2.018 2.247 sum -6.640 -4.643 25.386 26.647 Atomic orbital electron populations 1.22293 0.91215 1.03578 1.05440 1.21943 0.96643 0.96492 0.83024 0.86681 1.88080 1.87040 1.35349 1.19512 1.21617 1.01949 0.91230 0.83178 1.20262 0.93927 0.97192 0.95397 1.22371 1.02148 0.97510 0.95175 1.23240 0.91869 0.95429 0.96755 1.67690 1.04416 1.20524 1.29507 1.23121 1.00595 0.93091 0.90529 1.22336 0.96514 0.99965 0.99236 1.20695 0.78940 0.84856 0.83961 1.90705 1.42650 1.25927 1.86443 1.48743 1.55261 1.25919 1.04592 1.22447 0.96900 0.85290 0.97262 1.22491 0.98439 0.98411 0.96185 1.21606 0.96132 0.95528 0.94042 1.21599 0.94934 1.00853 1.00393 1.20692 0.97374 0.88674 0.89196 1.42440 1.84558 1.08176 1.02725 1.19603 1.38349 0.95166 0.84389 0.90958 1.25449 1.03370 0.95655 1.01885 1.69785 1.56120 1.00232 1.35498 0.85217 0.77039 0.77038 0.80916 1.21360 1.22390 1.19895 1.22319 1.00251 0.95298 0.82330 0.88992 0.92705 0.88553 0.88844 0.90520 0.82233 0.80322 0.80923 0.83643 0.88721 0.88033 0.90569 0.90656 0.92324 0.93647 0.93395 0.96849 0.95377 0.78867 0.94074 0.91365 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 9.40 71.98 0.68 -1.21 16 2 C 0.08 1.34 2.50 29.85 0.07 1.42 16 3 H 0.12 1.26 7.33 -2.39 -0.02 1.25 16 4 O -0.38 -7.92 9.51 -129.99 -1.24 -9.16 16 5 C 0.10 1.24 5.92 71.24 0.42 1.66 16 6 C -0.06 -0.95 5.55 -19.67 -0.11 -1.06 16 7 C -0.15 -2.10 9.82 22.36 0.22 -1.88 16 8 C 0.08 1.28 11.18 84.68 0.95 2.23 16 9 N -0.51 -10.07 10.36 -195.85 -2.03 -12.10 16 10 C 0.08 1.43 11.18 84.68 0.95 2.38 16 11 C -0.16 -2.67 9.82 22.36 0.22 -2.45 16 12 C 0.53 13.61 7.27 87.66 0.64 14.25 16 13 O -0.58 -21.05 16.72 15.97 0.27 -20.78 16 14 N -0.61 -13.97 3.21 -810.07 -2.60 -16.56 16 15 C 0.10 1.73 5.39 86.53 0.47 2.20 16 16 C -0.12 -2.88 5.51 31.48 0.17 -2.71 16 17 C -0.07 -2.10 0.64 -51.09 -0.03 -2.14 16 18 C -0.12 -3.73 8.28 71.98 0.60 -3.13 16 19 C 0.17 6.29 5.10 86.38 0.44 6.73 16 20 N -0.74 -35.12 5.15 -343.43 -1.77 -36.89 16 21 C -0.24 -13.13 9.99 84.03 0.84 -12.29 16 22 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 23 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 24 N -0.97 -56.95 13.06 21.65 0.28 -56.67 16 25 Si 0.97 45.16 29.55 68.60 2.03 47.19 16 26 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 27 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 28 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 29 C 0.12 3.23 5.97 86.61 0.52 3.74 16 30 H 0.09 0.78 5.72 -2.38 -0.01 0.77 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 0.59 7.87 -2.39 -0.02 0.58 16 33 H 0.09 0.66 7.83 -2.38 -0.02 0.64 16 34 H 0.08 0.80 8.05 -2.39 -0.02 0.78 16 35 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 38 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.09 1.21 7.31 -2.39 -0.02 1.19 16 40 H 0.10 1.15 7.38 -2.39 -0.02 1.13 16 41 H 0.08 2.06 7.85 -2.39 -0.02 2.04 16 42 H 0.07 1.94 7.87 -2.39 -0.02 1.92 16 43 H 0.06 1.61 8.08 -2.39 -0.02 1.59 16 44 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.05 1.69 7.11 -2.39 -0.02 1.67 16 46 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.03 1.04 8.13 -2.39 -0.02 1.02 16 48 H 0.38 18.92 6.38 -92.71 -0.59 18.33 16 49 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 50 H 0.07 2.05 7.75 -2.39 -0.02 2.03 16 51 H 0.08 2.09 8.04 -2.38 -0.02 2.07 16 Total: -1.00 -76.56 413.39 2.78 -73.78 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.33 Total: 26.94 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 7.50 Total: 4.25 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -6.11 Total: -122.22 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.97 Total: -29.94 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -76.56 2.78 -73.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754705520.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.476 kcal (2) G-P(sol) polarization free energy of solvation -76.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds