Wall clock time and date at job start Wed Apr 1 2020 04:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47124 * 2 1 4 4 O 1.42902 * 109.47444 * 239.99516 * 2 1 3 5 5 C 1.42895 * 113.99863 * 89.99877 * 4 2 1 6 6 C 1.50699 * 109.47258 * 179.97438 * 5 4 2 7 7 C 1.38653 * 120.78885 * 269.72380 * 6 5 4 8 8 C 1.38207 * 119.15747 * 179.75382 * 7 6 5 9 9 N 1.31866 * 120.76682 * 0.52976 * 8 7 6 10 10 C 1.31873 * 121.72464 * 359.74373 * 9 8 7 11 11 C 1.38197 * 120.76538 * 359.97438 * 10 9 8 12 12 C 1.50702 * 109.46981 * 119.99324 * 2 1 3 13 13 O 1.21283 * 119.99769 * 111.44868 * 12 2 1 14 14 N 1.34778 * 120.00294 * 291.45710 * 12 2 1 15 15 C 1.47480 * 127.03331 * 184.73951 * 14 12 2 16 16 C 1.54013 * 107.08259 * 154.51129 * 15 14 12 17 17 C 1.54617 * 105.04137 * 1.30747 * 16 15 14 18 18 C 1.52999 * 110.73788 * 263.50748 * 17 16 15 19 19 C 1.52997 * 110.73601 * 140.36657 * 17 16 15 20 20 N 1.46502 * 109.47476 * 61.45243 * 19 17 16 21 21 C 1.36940 * 120.00081 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00102 * 359.97438 * 21 20 19 23 23 C 1.38814 * 119.99629 * 180.02562 * 21 20 19 24 24 N 1.31616 * 120.00128 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99940 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47298 * 89.99460 * 25 23 21 27 27 H 1.48498 * 109.47501 * 209.99589 * 25 23 21 28 28 H 1.48500 * 109.47105 * 329.99733 * 25 23 21 29 29 C 1.48119 * 127.03117 * 4.41823 * 14 12 2 30 30 H 1.09005 * 109.46961 * 65.56593 * 1 2 3 31 31 H 1.09005 * 109.47038 * 185.56414 * 1 2 3 32 32 H 1.08997 * 109.47343 * 305.56729 * 1 2 3 33 33 H 1.09002 * 109.47517 * 300.00352 * 5 4 2 34 34 H 1.09007 * 109.47230 * 60.00305 * 5 4 2 35 35 H 1.08000 * 120.41883 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.61407 * 180.25097 * 8 7 6 37 37 H 1.08002 * 119.61696 * 180.02562 * 10 9 8 38 38 H 1.08004 * 120.42104 * 180.02562 * 11 10 9 39 39 H 1.08994 * 109.91475 * 273.87053 * 15 14 12 40 40 H 1.08999 * 109.91403 * 34.96141 * 15 14 12 41 41 H 1.09003 * 110.32059 * 120.19873 * 16 15 14 42 42 H 1.09000 * 110.32367 * 242.30899 * 16 15 14 43 43 H 1.09003 * 109.47055 * 58.55026 * 18 17 16 44 44 H 1.08998 * 109.47335 * 178.54890 * 18 17 16 45 45 H 1.08994 * 109.47186 * 298.54976 * 18 17 16 46 46 H 1.08999 * 109.47407 * 181.45011 * 19 17 16 47 47 H 1.09005 * 109.47521 * 301.45163 * 19 17 16 48 48 H 0.96998 * 119.99377 * 359.97438 * 20 19 17 49 49 H 0.97003 * 120.00240 * 180.02562 * 24 23 21 50 50 H 1.08998 * 110.65954 * 337.77508 * 29 14 12 51 51 H 1.08997 * 110.65972 * 100.89521 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2002 0.1827 -2.2940 6 6 2.7016 -0.6284 -3.4609 7 6 4.0607 -0.8067 -3.6695 8 6 4.4832 -1.5613 -4.7476 9 7 3.6111 -2.0993 -5.5775 10 6 2.3116 -1.9461 -5.4132 11 6 1.8150 -1.2095 -4.3546 12 6 2.0323 -0.7103 1.2306 13 8 2.5965 -1.7788 1.1261 14 7 1.8544 -0.1582 2.4472 15 6 2.3635 -0.6646 3.7354 16 6 2.4837 0.5450 4.6812 17 6 1.9797 1.7514 3.8559 18 6 3.1530 2.5051 3.2263 19 6 1.1397 2.6893 4.7250 20 7 1.9639 3.2117 5.8177 21 6 1.4224 4.0770 6.7305 22 1 0.3878 4.3747 6.6447 23 6 2.2036 4.5723 7.7656 24 7 3.4645 4.2099 7.8699 25 14 1.4652 5.7532 9.0103 26 1 0.8917 4.9834 10.1434 27 1 2.5229 6.6645 9.5162 28 1 0.3938 6.5506 8.3611 29 6 1.1131 1.0846 2.7631 30 1 -0.3633 0.4251 -0.9357 31 1 -0.3633 -1.0229 0.0996 32 1 -0.3634 0.5977 0.8359 33 1 1.2539 0.6545 -2.5589 34 1 2.9321 0.9512 -2.0450 35 1 4.7799 -0.3644 -2.9961 36 1 5.5400 -1.7083 -4.9147 37 1 1.6276 -2.4022 -6.1135 38 1 0.7496 -1.0879 -4.2251 39 1 1.6660 -1.3922 4.1501 40 1 3.3405 -1.1264 3.5928 41 1 1.8577 0.4005 5.5618 42 1 3.5226 0.6932 4.9760 43 1 3.7196 1.8273 2.5879 44 1 2.7737 3.3345 2.6294 45 1 3.8014 2.8905 4.0131 46 1 0.7742 3.5174 4.1178 47 1 0.2933 2.1408 5.1385 48 1 2.8930 2.9439 5.8950 49 1 4.0103 4.5557 8.5934 50 1 1.0441 1.7252 1.8839 51 1 0.1210 0.8527 3.1502 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754705521.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:28 Heat of formation + Delta-G solvation = -28.390218 kcal Electronic energy + Delta-G solvation = -30342.328802 eV Core-core repulsion = 26242.250930 eV Total energy + Delta-G solvation = -4100.077872 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.65292 -40.35424 -38.72808 -37.50476 -34.83771 -33.85293 -32.72963 -31.73374 -31.57419 -30.14028 -29.40489 -27.30869 -26.81535 -25.59420 -24.58387 -23.83286 -22.60429 -22.46983 -22.27352 -19.61457 -18.78605 -17.83419 -17.26101 -17.09286 -16.86714 -16.66283 -15.98163 -15.92207 -15.56808 -15.21281 -14.67314 -14.21365 -14.16810 -14.07019 -14.05865 -13.86694 -13.63295 -13.47150 -13.07292 -12.95421 -12.82902 -12.56132 -12.48372 -12.34414 -12.10709 -11.93335 -11.75274 -11.63265 -11.25082 -11.08427 -10.86327 -10.63723 -10.44477 -10.34862 -10.29140 -10.12613 -10.02356 -9.85531 -9.74706 -9.60171 -9.50636 -8.93398 -8.70387 -6.97966 -5.82217 -3.10850 0.74748 0.78120 2.49860 2.55711 3.32404 3.39543 3.44974 3.46534 3.68417 4.10619 4.16660 4.28532 4.36176 4.47898 4.55087 4.64281 4.65102 4.69015 4.75221 4.86775 4.90021 4.94867 5.01493 5.22572 5.24539 5.29910 5.32916 5.38857 5.41363 5.42925 5.53724 5.57046 5.61388 5.75402 5.80158 5.87682 5.89630 5.91981 6.06638 6.20116 6.23755 6.31331 6.34906 6.47632 6.55088 6.65285 6.68195 6.74983 7.45590 7.59913 7.64673 8.08070 8.36615 9.48356 10.05309 10.39937 11.40474 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024275 B = 0.001806 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.193755 B =15503.453530 C =15608.062765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.075 3.925 3 H 0.088 0.912 4 O -0.350 6.350 5 C 0.097 3.903 6 C -0.043 4.043 7 C -0.149 4.149 8 C 0.096 3.904 9 N -0.483 5.483 10 C 0.095 3.905 11 C -0.151 4.151 12 C 0.534 3.466 13 O -0.525 6.525 14 N -0.615 5.615 15 C 0.109 3.891 16 C -0.119 4.119 17 C -0.079 4.079 18 C -0.130 4.130 19 C 0.169 3.831 20 N -0.728 5.728 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.106 3.894 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.137 0.863 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.136 0.864 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.044 0.956 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.021 0.979 47 H 0.022 0.978 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.079 0.921 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.250 -8.474 -23.383 25.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 H 0.106 0.894 4 O -0.268 6.268 5 C 0.021 3.979 6 C -0.051 4.051 7 C -0.169 4.169 8 C -0.060 4.060 9 N -0.192 5.192 10 C -0.062 4.062 11 C -0.171 4.171 12 C 0.321 3.679 13 O -0.400 6.400 14 N -0.350 5.350 15 C -0.013 4.013 16 C -0.157 4.157 17 C -0.081 4.081 18 C -0.188 4.188 19 C 0.041 3.959 20 N -0.373 5.373 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.017 4.017 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.155 0.845 36 H 0.175 0.825 37 H 0.175 0.825 38 H 0.154 0.846 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.039 0.961 47 H 0.039 0.961 48 H 0.220 0.780 49 H 0.065 0.935 50 H 0.097 0.903 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.696 -9.691 -24.170 26.301 hybrid contribution -0.457 1.439 1.626 2.219 sum -4.153 -8.251 -22.544 24.363 Atomic orbital electron populations 1.22292 0.93258 1.04010 1.03504 1.21857 0.95343 0.96261 0.85152 0.89432 1.88110 1.86627 1.33573 1.18451 1.21433 1.00258 0.91663 0.84556 1.19958 0.93706 0.96753 0.94722 1.22133 0.95883 0.99781 0.99088 1.22795 0.99767 0.93007 0.90452 1.67673 1.03405 1.19623 1.28539 1.22779 0.91982 0.95377 0.96064 1.22084 1.01010 0.98244 0.95788 1.19847 0.79673 0.85541 0.82861 1.90727 1.42405 1.21224 1.85657 1.48707 1.53708 1.26659 1.05937 1.22089 0.99724 0.97092 0.82383 1.22573 1.03266 0.92251 0.97649 1.21796 0.96255 0.95320 0.94687 1.21724 0.97371 0.98933 1.00749 1.20589 0.92650 0.93464 0.89236 1.42318 1.11486 1.54649 1.28850 1.19206 0.95392 1.18627 1.03951 0.91209 1.24727 0.95903 1.00938 0.99299 1.69648 1.06174 1.48277 1.33978 0.86202 0.77814 0.80621 0.81595 1.21737 1.21805 1.20806 1.22686 0.95591 0.84851 0.98600 0.91107 0.91088 0.90312 0.91569 0.91593 0.84484 0.82470 0.82546 0.84577 0.91679 0.90867 0.89604 0.90221 0.93703 0.92803 0.91035 0.96122 0.96070 0.78048 0.93491 0.90280 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 9.31 37.16 0.35 -1.02 16 2 C 0.08 0.77 2.40 -27.88 -0.07 0.70 16 3 H 0.09 0.72 7.29 -51.93 -0.38 0.34 16 4 O -0.35 -4.05 9.52 -54.99 -0.52 -4.58 16 5 C 0.10 0.79 5.92 36.01 0.21 1.00 16 6 C -0.04 -0.38 5.55 -104.32 -0.58 -0.96 16 7 C -0.15 -1.29 9.82 -39.44 -0.39 -1.68 16 8 C 0.10 0.85 11.18 -17.55 -0.20 0.65 16 9 N -0.48 -4.86 10.36 -13.25 -0.14 -5.00 16 10 C 0.09 0.79 11.18 -17.55 -0.20 0.59 16 11 C -0.15 -1.20 9.82 -39.44 -0.39 -1.58 16 12 C 0.53 7.37 7.24 -10.98 -0.08 7.29 16 13 O -0.52 -9.50 16.89 -14.21 -0.24 -9.74 16 14 N -0.61 -7.71 3.21 -169.98 -0.55 -8.26 16 15 C 0.11 1.43 6.94 -2.98 -0.02 1.41 16 16 C -0.12 -1.69 5.51 -25.35 -0.14 -1.83 16 17 C -0.08 -1.11 0.64 -152.82 -0.10 -1.20 16 18 C -0.13 -1.85 8.28 37.16 0.31 -1.54 16 19 C 0.17 2.98 5.10 -4.04 -0.02 2.96 16 20 N -0.73 -16.89 5.15 -59.91 -0.31 -17.20 16 21 C -0.24 -6.37 9.99 -15.06 -0.15 -6.52 16 22 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -27.14 13.06 55.49 0.72 -26.41 16 25 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 C 0.11 1.17 4.51 -2.31 -0.01 1.16 16 30 H 0.07 0.43 7.78 -51.93 -0.40 0.02 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.55 6.15 -51.93 -0.32 0.23 16 33 H 0.07 0.39 7.74 -51.93 -0.40 -0.01 16 34 H 0.07 0.45 8.04 -51.92 -0.42 0.04 16 35 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 41 H 0.09 1.30 7.85 -51.93 -0.41 0.90 16 42 H 0.08 1.20 7.87 -51.93 -0.41 0.79 16 43 H 0.04 0.59 8.08 -51.93 -0.42 0.17 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.20 7.11 -51.93 -0.37 0.83 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.02 0.38 8.13 -51.93 -0.42 -0.04 16 48 H 0.39 9.42 6.38 -40.82 -0.26 9.16 16 49 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 50 H 0.08 0.71 6.33 -51.93 -0.33 0.38 16 51 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 LS Contribution 413.78 15.07 6.24 6.24 Total: -1.00 -34.22 413.78 -9.68 -43.90 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -8.30 Total: 5.40 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -1.56 Total: -1.03 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.27 Total: -56.87 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.76 Total: -14.31 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.22 -9.68 -43.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754705521.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.513 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds