Wall clock time and date at job start Wed Apr 1 2020 04:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47124 * 2 1 4 4 O 1.42902 * 109.47444 * 239.99516 * 2 1 3 5 5 C 1.42895 * 113.99863 * 89.99877 * 4 2 1 6 6 C 1.50699 * 109.47258 * 179.97438 * 5 4 2 7 7 C 1.38653 * 120.78885 * 269.72380 * 6 5 4 8 8 C 1.38207 * 119.15747 * 179.75382 * 7 6 5 9 9 N 1.31866 * 120.76682 * 0.52976 * 8 7 6 10 10 C 1.31873 * 121.72464 * 359.74373 * 9 8 7 11 11 C 1.38197 * 120.76538 * 359.97438 * 10 9 8 12 12 C 1.50702 * 109.46981 * 119.99324 * 2 1 3 13 13 O 1.21283 * 119.99769 * 111.44868 * 12 2 1 14 14 N 1.34778 * 120.00294 * 291.45710 * 12 2 1 15 15 C 1.47480 * 127.03331 * 184.73951 * 14 12 2 16 16 C 1.54013 * 107.08259 * 154.51129 * 15 14 12 17 17 C 1.54617 * 105.04137 * 1.30747 * 16 15 14 18 18 C 1.52999 * 110.73788 * 263.50748 * 17 16 15 19 19 C 1.52997 * 110.73601 * 140.36657 * 17 16 15 20 20 N 1.46502 * 109.47476 * 61.45243 * 19 17 16 21 21 C 1.36940 * 120.00081 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00102 * 359.97438 * 21 20 19 23 23 C 1.38814 * 119.99629 * 180.02562 * 21 20 19 24 24 N 1.31616 * 120.00128 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99940 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47298 * 89.99460 * 25 23 21 27 27 H 1.48498 * 109.47501 * 209.99589 * 25 23 21 28 28 H 1.48500 * 109.47105 * 329.99733 * 25 23 21 29 29 C 1.48119 * 127.03117 * 4.41823 * 14 12 2 30 30 H 1.09005 * 109.46961 * 65.56593 * 1 2 3 31 31 H 1.09005 * 109.47038 * 185.56414 * 1 2 3 32 32 H 1.08997 * 109.47343 * 305.56729 * 1 2 3 33 33 H 1.09002 * 109.47517 * 300.00352 * 5 4 2 34 34 H 1.09007 * 109.47230 * 60.00305 * 5 4 2 35 35 H 1.08000 * 120.41883 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.61407 * 180.25097 * 8 7 6 37 37 H 1.08002 * 119.61696 * 180.02562 * 10 9 8 38 38 H 1.08004 * 120.42104 * 180.02562 * 11 10 9 39 39 H 1.08994 * 109.91475 * 273.87053 * 15 14 12 40 40 H 1.08999 * 109.91403 * 34.96141 * 15 14 12 41 41 H 1.09003 * 110.32059 * 120.19873 * 16 15 14 42 42 H 1.09000 * 110.32367 * 242.30899 * 16 15 14 43 43 H 1.09003 * 109.47055 * 58.55026 * 18 17 16 44 44 H 1.08998 * 109.47335 * 178.54890 * 18 17 16 45 45 H 1.08994 * 109.47186 * 298.54976 * 18 17 16 46 46 H 1.08999 * 109.47407 * 181.45011 * 19 17 16 47 47 H 1.09005 * 109.47521 * 301.45163 * 19 17 16 48 48 H 0.96998 * 119.99377 * 359.97438 * 20 19 17 49 49 H 0.97003 * 120.00240 * 180.02562 * 24 23 21 50 50 H 1.08998 * 110.65954 * 337.77508 * 29 14 12 51 51 H 1.08997 * 110.65972 * 100.89521 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2002 0.1827 -2.2940 6 6 2.7016 -0.6284 -3.4609 7 6 4.0607 -0.8067 -3.6695 8 6 4.4832 -1.5613 -4.7476 9 7 3.6111 -2.0993 -5.5775 10 6 2.3116 -1.9461 -5.4132 11 6 1.8150 -1.2095 -4.3546 12 6 2.0323 -0.7103 1.2306 13 8 2.5965 -1.7788 1.1261 14 7 1.8544 -0.1582 2.4472 15 6 2.3635 -0.6646 3.7354 16 6 2.4837 0.5450 4.6812 17 6 1.9797 1.7514 3.8559 18 6 3.1530 2.5051 3.2263 19 6 1.1397 2.6893 4.7250 20 7 1.9639 3.2117 5.8177 21 6 1.4224 4.0770 6.7305 22 1 0.3878 4.3747 6.6447 23 6 2.2036 4.5723 7.7656 24 7 3.4645 4.2099 7.8699 25 14 1.4652 5.7532 9.0103 26 1 0.8917 4.9834 10.1434 27 1 2.5229 6.6645 9.5162 28 1 0.3938 6.5506 8.3611 29 6 1.1131 1.0846 2.7631 30 1 -0.3633 0.4251 -0.9357 31 1 -0.3633 -1.0229 0.0996 32 1 -0.3634 0.5977 0.8359 33 1 1.2539 0.6545 -2.5589 34 1 2.9321 0.9512 -2.0450 35 1 4.7799 -0.3644 -2.9961 36 1 5.5400 -1.7083 -4.9147 37 1 1.6276 -2.4022 -6.1135 38 1 0.7496 -1.0879 -4.2251 39 1 1.6660 -1.3922 4.1501 40 1 3.3405 -1.1264 3.5928 41 1 1.8577 0.4005 5.5618 42 1 3.5226 0.6932 4.9760 43 1 3.7196 1.8273 2.5879 44 1 2.7737 3.3345 2.6294 45 1 3.8014 2.8905 4.0131 46 1 0.7742 3.5174 4.1178 47 1 0.2933 2.1408 5.1385 48 1 2.8930 2.9439 5.8950 49 1 4.0103 4.5557 8.5934 50 1 1.0441 1.7252 1.8839 51 1 0.1210 0.8527 3.1502 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754705521.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:27 Heat of formation + Delta-G solvation = -49.533388 kcal Electronic energy + Delta-G solvation = -30343.245639 eV Core-core repulsion = 26242.250930 eV Total energy + Delta-G solvation = -4100.994709 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.54592 -41.09196 -39.69420 -38.48444 -36.41623 -34.56831 -34.18322 -32.70465 -32.15811 -31.74148 -30.43168 -27.99651 -27.84824 -27.13901 -25.58495 -24.43021 -24.26396 -23.41580 -22.95098 -20.57029 -20.02631 -19.14995 -18.62037 -17.84436 -17.55723 -17.41044 -17.01346 -16.63080 -16.53329 -16.40593 -16.02199 -15.47407 -15.25755 -15.12596 -14.98184 -14.79576 -14.57576 -14.49565 -14.33694 -13.99058 -13.80313 -13.60665 -13.36860 -13.33618 -12.98814 -12.92830 -12.83971 -12.78724 -12.51860 -12.42984 -12.31831 -12.11202 -12.01517 -11.61251 -11.52582 -11.42384 -11.09141 -10.88137 -10.76709 -10.55312 -10.47930 -10.10038 -9.76391 -8.91255 -7.90145 -5.16776 0.12303 0.18759 1.48641 1.50921 1.51364 1.59532 1.65485 2.59083 2.62991 3.03402 3.32274 3.43021 3.48266 3.57366 3.70461 3.75617 3.80148 3.84314 3.92563 4.05420 4.10849 4.18432 4.19385 4.29336 4.37227 4.38880 4.41225 4.42217 4.53196 4.68475 4.70309 4.72472 4.78347 4.82498 4.85381 4.87512 4.97726 5.01593 5.05765 5.09283 5.19647 5.21534 5.30530 5.33437 5.37275 5.49495 5.56525 5.74358 5.98932 6.32323 6.46513 6.99007 7.05572 7.39969 8.18468 8.39686 9.33347 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024275 B = 0.001806 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.193755 B =15503.453530 C =15608.062765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.078 3.922 3 H 0.115 0.885 4 O -0.380 6.380 5 C 0.095 3.905 6 C -0.059 4.059 7 C -0.161 4.161 8 C 0.083 3.917 9 N -0.511 5.511 10 C 0.084 3.916 11 C -0.153 4.153 12 C 0.528 3.472 13 O -0.578 6.578 14 N -0.611 5.611 15 C 0.113 3.887 16 C -0.114 4.114 17 C -0.074 4.074 18 C -0.124 4.124 19 C 0.167 3.833 20 N -0.740 5.740 21 C -0.236 4.236 22 H 0.078 0.922 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.968 3.032 26 H -0.291 1.291 27 H -0.300 1.300 28 H -0.268 1.268 29 C 0.113 3.887 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.146 0.854 36 H 0.174 0.826 37 H 0.180 0.820 38 H 0.160 0.840 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.068 0.932 45 H 0.037 0.963 46 H 0.032 0.968 47 H 0.028 0.972 48 H 0.375 0.625 49 H 0.248 0.752 50 H 0.112 0.888 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.703 -7.410 -24.961 26.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.018 3.982 3 H 0.132 0.868 4 O -0.299 6.299 5 C 0.020 3.980 6 C -0.068 4.068 7 C -0.181 4.181 8 C -0.073 4.073 9 N -0.221 5.221 10 C -0.073 4.073 11 C -0.172 4.172 12 C 0.317 3.683 13 O -0.457 6.457 14 N -0.345 5.345 15 C -0.009 4.009 16 C -0.152 4.152 17 C -0.075 4.075 18 C -0.181 4.181 19 C 0.041 3.959 20 N -0.383 5.383 21 C -0.369 4.369 22 H 0.096 0.904 23 C -0.269 4.269 24 N -0.621 5.621 25 Si 0.798 3.202 26 H -0.218 1.218 27 H -0.227 1.227 28 H -0.193 1.193 29 C -0.009 4.009 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.164 0.836 36 H 0.191 0.809 37 H 0.197 0.803 38 H 0.178 0.822 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.057 0.943 46 H 0.050 0.950 47 H 0.046 0.954 48 H 0.208 0.792 49 H 0.057 0.943 50 H 0.130 0.870 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.204 -8.608 -25.775 27.874 hybrid contribution 0.288 1.059 2.069 2.343 sum -5.916 -7.548 -23.706 25.572 Atomic orbital electron populations 1.22301 0.91192 1.03551 1.05497 1.21954 0.96697 0.96478 0.83087 0.86780 1.88074 1.87018 1.35330 1.19484 1.21622 1.01974 0.91248 0.83200 1.20257 0.93948 0.97185 0.95369 1.22339 0.96475 0.99962 0.99278 1.23122 1.00606 0.93065 0.90531 1.67689 1.04430 1.20576 1.29428 1.23238 0.91861 0.95423 0.96756 1.22371 1.02160 0.97483 0.95198 1.20666 0.78626 0.85071 0.83924 1.90701 1.44871 1.23710 1.86405 1.48730 1.53350 1.26879 1.05498 1.21972 0.99533 0.96626 0.82813 1.22449 1.02014 0.93165 0.97608 1.21679 0.96289 0.94452 0.95083 1.21639 0.97000 0.99542 0.99913 1.20757 0.92575 0.94303 0.88306 1.42529 1.11639 1.54348 1.29833 1.19634 0.95585 1.17790 1.03844 0.90402 1.25480 0.96420 1.03337 1.01636 1.69805 1.07493 1.50088 1.34686 0.85217 0.77023 0.78634 0.79350 1.21808 1.22734 1.19319 1.22766 0.95160 0.84187 0.98759 0.88587 0.92720 0.88886 0.88846 0.90524 0.83620 0.80904 0.80319 0.82246 0.90887 0.92052 0.90783 0.91883 0.92763 0.91318 0.94347 0.95012 0.95432 0.79214 0.94282 0.87032 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.31 71.98 0.67 -1.32 16 2 C 0.08 1.36 2.40 29.85 0.07 1.43 16 3 H 0.11 1.35 7.29 -2.39 -0.02 1.33 16 4 O -0.38 -7.99 9.52 -130.08 -1.24 -9.23 16 5 C 0.10 1.27 5.92 71.24 0.42 1.69 16 6 C -0.06 -0.95 5.55 -19.67 -0.11 -1.06 16 7 C -0.16 -2.68 9.82 22.36 0.22 -2.46 16 8 C 0.08 1.44 11.18 84.68 0.95 2.38 16 9 N -0.51 -10.09 10.36 -195.85 -2.03 -12.12 16 10 C 0.08 1.29 11.18 84.68 0.95 2.24 16 11 C -0.15 -2.13 9.82 22.36 0.22 -1.91 16 12 C 0.53 13.72 7.24 87.66 0.63 14.35 16 13 O -0.58 -20.92 16.89 15.86 0.27 -20.66 16 14 N -0.61 -14.07 3.21 -810.09 -2.60 -16.67 16 15 C 0.11 2.90 6.94 86.53 0.60 3.50 16 16 C -0.11 -3.20 5.51 31.49 0.17 -3.03 16 17 C -0.07 -1.92 0.64 -51.09 -0.03 -1.95 16 18 C -0.12 -3.32 8.28 71.98 0.60 -2.72 16 19 C 0.17 5.56 5.10 86.38 0.44 6.00 16 20 N -0.74 -34.03 5.15 -343.45 -1.77 -35.80 16 21 C -0.24 -12.35 9.99 84.03 0.84 -11.51 16 22 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 23 C -0.08 -4.22 5.50 84.86 0.47 -3.76 16 24 N -0.97 -57.51 13.06 21.65 0.28 -57.23 16 25 Si 0.97 44.59 29.55 68.60 2.03 46.62 16 26 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 27 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 29 C 0.11 2.09 4.51 86.61 0.39 2.48 16 30 H 0.10 0.68 7.78 -2.38 -0.02 0.66 16 31 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.09 0.82 6.15 -2.39 -0.01 0.81 16 33 H 0.09 0.71 7.74 -2.39 -0.02 0.69 16 34 H 0.08 0.83 8.04 -2.38 -0.02 0.81 16 35 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 36 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.06 1.72 8.09 -2.39 -0.02 1.70 16 41 H 0.07 2.25 7.85 -2.39 -0.02 2.23 16 42 H 0.06 1.97 7.87 -2.39 -0.02 1.95 16 43 H 0.05 1.34 8.08 -2.39 -0.02 1.32 16 44 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.04 1.29 7.11 -2.39 -0.02 1.27 16 46 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.03 0.91 8.13 -2.38 -0.02 0.89 16 48 H 0.38 18.67 6.38 -92.71 -0.59 18.08 16 49 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 50 H 0.11 1.40 6.33 -2.39 -0.02 1.38 16 51 H 0.10 1.54 8.04 -2.39 -0.02 1.53 16 Total: -1.00 -75.96 413.78 2.77 -73.19 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.33 Total: 27.53 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 7.50 Total: 4.36 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -6.11 Total: -121.81 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.97 Total: -29.89 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -75.96 2.77 -73.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754705521.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.661 kcal (2) G-P(sol) polarization free energy of solvation -75.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds