Wall clock time and date at job start Wed Apr 1 2020 04:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47012 * 2 1 4 4 O 1.42902 * 109.47399 * 240.00405 * 2 1 3 5 5 C 1.42894 * 114.00068 * 89.99663 * 4 2 1 6 6 C 1.50705 * 109.46985 * 180.02562 * 5 4 2 7 7 C 1.38656 * 120.78672 * 269.72193 * 6 5 4 8 8 C 1.38211 * 119.15735 * 179.79994 * 7 6 5 9 9 N 1.31864 * 120.76453 * 0.48201 * 8 7 6 10 10 C 1.31872 * 121.72876 * 359.74380 * 9 8 7 11 11 C 1.38204 * 120.76282 * 0.02562 * 10 9 8 12 12 C 1.50702 * 109.47240 * 119.99746 * 2 1 3 13 13 O 1.21280 * 119.99779 * 103.51681 * 12 2 1 14 14 N 1.34777 * 120.00163 * 283.24543 * 12 2 1 15 15 C 1.47417 * 125.64675 * 4.38164 * 14 12 2 16 16 C 1.55137 * 104.72239 * 155.81960 * 15 14 12 17 17 C 1.55159 * 101.47809 * 37.29759 * 16 15 14 18 18 C 1.52996 * 110.87132 * 82.77189 * 17 16 15 19 19 C 1.53007 * 110.71706 * 205.96681 * 17 16 15 20 20 N 1.46493 * 109.47058 * 293.52868 * 19 17 16 21 21 C 1.36950 * 119.99860 * 179.97438 * 20 19 17 22 22 H 1.07994 * 119.99822 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00019 * 179.97438 * 21 20 19 24 24 N 1.31629 * 119.99921 * 359.97438 * 23 21 20 25 25 Si 1.86791 * 120.00130 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47458 * 89.99963 * 25 23 21 27 27 H 1.48495 * 109.47609 * 210.00077 * 25 23 21 28 28 H 1.48502 * 109.47183 * 330.00045 * 25 23 21 29 29 C 1.47021 * 125.64736 * 184.69683 * 14 12 2 30 30 H 1.08996 * 109.47075 * 304.87568 * 1 2 3 31 31 H 1.09005 * 109.46980 * 64.87203 * 1 2 3 32 32 H 1.08997 * 109.47219 * 184.87064 * 1 2 3 33 33 H 1.09003 * 109.47467 * 299.99811 * 5 4 2 34 34 H 1.09003 * 109.47422 * 60.00229 * 5 4 2 35 35 H 1.07998 * 120.42183 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.61452 * 180.20479 * 8 7 6 37 37 H 1.08002 * 119.61877 * 179.97438 * 10 9 8 38 38 H 1.08004 * 120.41663 * 179.97438 * 11 10 9 39 39 H 1.08998 * 110.37101 * 274.75050 * 15 14 12 40 40 H 1.09003 * 110.36838 * 37.07504 * 15 14 12 41 41 H 1.08996 * 111.19046 * 279.19898 * 16 15 14 42 42 H 1.08996 * 110.93943 * 155.29028 * 16 15 14 43 43 H 1.09000 * 109.47217 * 306.38044 * 18 17 16 44 44 H 1.09002 * 109.47574 * 66.38548 * 18 17 16 45 45 H 1.09010 * 109.46792 * 186.38552 * 18 17 16 46 46 H 1.09004 * 109.46712 * 53.52706 * 19 17 16 47 47 H 1.08993 * 109.47279 * 173.52178 * 19 17 16 48 48 H 0.96999 * 120.00737 * 359.97438 * 20 19 17 49 49 H 0.97001 * 119.99812 * 179.97438 * 24 23 21 50 50 H 1.09001 * 109.88255 * 300.43891 * 29 14 12 51 51 H 1.09004 * 109.88011 * 61.44575 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1830 -2.2940 6 6 2.7003 -0.6283 -3.4614 7 6 4.0592 -0.8074 -3.6708 8 6 4.4807 -1.5613 -4.7498 9 7 3.6078 -2.0986 -5.5793 10 6 2.3085 -1.9454 -5.4137 11 6 1.8129 -1.2085 -4.3547 12 6 2.0324 -0.7104 1.2305 13 8 2.4659 -1.8397 1.1441 14 7 2.0049 -0.0886 2.4260 15 6 1.4295 1.2429 2.6888 16 6 1.0807 1.2303 4.2004 17 6 2.2677 0.4196 4.7845 18 6 3.4863 1.3184 5.0036 19 6 1.8632 -0.2682 6.0900 20 7 1.6024 0.7451 7.1153 21 6 1.2221 0.3633 8.3743 22 1 1.1139 -0.6848 8.6111 23 6 0.9755 1.3234 9.3460 24 7 1.1078 2.6008 9.0575 25 14 0.4574 0.8026 11.0634 26 1 1.6638 0.6146 11.9088 27 1 -0.4062 1.8530 11.6599 28 1 -0.2972 -0.4741 10.9869 29 6 2.5495 -0.6233 3.6826 30 1 -0.3633 0.5876 0.8431 31 1 -0.3633 0.4364 -0.9305 32 1 -0.3633 -1.0239 0.0873 33 1 1.2538 0.6547 -2.5589 34 1 2.9319 0.9515 -2.0450 35 1 4.7792 -0.3658 -2.9977 36 1 5.5373 -1.7084 -4.9179 37 1 1.6238 -2.4002 -6.1142 38 1 0.7477 -1.0862 -4.2247 39 1 2.1608 2.0217 2.4724 40 1 0.5287 1.3912 2.0933 41 1 0.1337 0.7221 4.3820 42 1 1.0624 2.2424 4.6045 43 1 3.7238 1.8409 4.0769 44 1 3.2654 2.0460 5.7846 45 1 4.3379 0.7086 5.3055 46 1 0.9619 -0.8588 5.9254 47 1 2.6700 -0.9215 6.4217 48 1 1.6992 1.6865 6.9026 49 1 0.9352 3.2718 9.7364 50 1 2.0583 -1.5647 3.9286 51 1 3.6236 -0.7807 3.5837 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754705522.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:32 Heat of formation + Delta-G solvation = -27.830028 kcal Electronic energy + Delta-G solvation = -30091.563841 eV Core-core repulsion = 25991.510260 eV Total energy + Delta-G solvation = -4100.053581 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.67734 -40.37561 -38.76392 -37.49884 -34.92885 -33.86673 -32.85809 -31.60390 -31.44264 -30.26350 -29.39092 -27.33415 -26.87028 -25.73131 -24.18651 -23.85878 -22.76782 -22.47920 -22.34474 -19.58410 -18.87256 -17.84893 -17.23245 -17.04530 -16.90647 -16.58090 -16.17052 -15.99215 -15.51851 -15.23814 -14.65843 -14.35567 -14.19822 -14.05514 -13.96234 -13.94580 -13.78085 -13.32498 -13.09081 -12.99871 -12.86392 -12.51679 -12.39218 -12.26322 -12.13939 -11.95126 -11.74556 -11.60273 -11.51945 -11.05378 -10.85355 -10.63515 -10.38715 -10.35782 -10.28382 -10.15793 -9.99570 -9.88056 -9.72581 -9.59845 -9.53293 -8.90820 -8.67165 -6.95388 -5.80778 -3.08718 0.71859 0.75335 2.46192 2.58211 3.30965 3.41464 3.47287 3.48292 3.66494 4.08070 4.13829 4.25028 4.32013 4.51521 4.54701 4.60194 4.62521 4.67229 4.72546 4.77492 4.85957 4.90880 4.98912 5.12914 5.21374 5.25701 5.30150 5.34539 5.38478 5.44748 5.54128 5.55315 5.66063 5.79439 5.84677 5.88678 5.94207 6.00198 6.03174 6.17076 6.25253 6.28580 6.34147 6.40728 6.61783 6.63295 6.72457 6.80186 7.43322 7.57436 7.67773 8.08036 8.38647 9.50367 10.06927 10.42168 11.42124 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.033645 B = 0.001678 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.015930 B =16685.734282 C =16823.268169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.077 3.923 3 H 0.085 0.915 4 O -0.350 6.350 5 C 0.098 3.902 6 C -0.044 4.044 7 C -0.150 4.150 8 C 0.097 3.903 9 N -0.483 5.483 10 C 0.095 3.905 11 C -0.151 4.151 12 C 0.528 3.472 13 O -0.522 6.522 14 N -0.613 5.613 15 C 0.090 3.910 16 C -0.115 4.115 17 C -0.077 4.077 18 C -0.133 4.133 19 C 0.168 3.832 20 N -0.728 5.728 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.120 3.880 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.137 0.863 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.137 0.863 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.045 0.955 44 H 0.074 0.926 45 H 0.055 0.945 46 H 0.022 0.978 47 H 0.022 0.978 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.071 0.929 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.468 -0.304 -27.630 27.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 H 0.102 0.898 4 O -0.268 6.268 5 C 0.021 3.979 6 C -0.052 4.052 7 C -0.170 4.170 8 C -0.060 4.060 9 N -0.192 5.192 10 C -0.061 4.061 11 C -0.171 4.171 12 C 0.315 3.685 13 O -0.397 6.397 14 N -0.348 5.348 15 C -0.033 4.033 16 C -0.153 4.153 17 C -0.078 4.078 18 C -0.190 4.190 19 C 0.040 3.960 20 N -0.373 5.373 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.002 4.002 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.155 0.845 36 H 0.175 0.825 37 H 0.175 0.825 38 H 0.154 0.846 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.064 0.936 44 H 0.093 0.907 45 H 0.074 0.926 46 H 0.040 0.960 47 H 0.040 0.960 48 H 0.219 0.781 49 H 0.064 0.936 50 H 0.089 0.911 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.996 -1.756 -28.329 28.454 hybrid contribution -0.639 0.907 1.747 2.070 sum 1.357 -0.849 -26.582 26.630 Atomic orbital electron populations 1.22283 0.93229 1.04209 1.03322 1.21872 0.95412 0.96038 0.85147 0.89751 1.88125 1.86592 1.33583 1.18467 1.21429 1.00210 0.91646 0.84596 1.19956 0.93706 0.96811 0.94721 1.22123 0.95860 0.99864 0.99106 1.22796 0.99766 0.92998 0.90453 1.67672 1.03389 1.19568 1.28588 1.22788 0.91987 0.95310 0.96054 1.22090 1.01029 0.98206 0.95770 1.19897 0.79196 0.86367 0.83048 1.90731 1.45847 1.17930 1.85180 1.48443 1.59049 1.19400 1.07939 1.22654 0.97968 0.84271 0.98360 1.22860 0.98663 1.02105 0.91705 1.21798 0.95919 0.95181 0.94920 1.21767 0.96299 0.99649 1.01269 1.20600 0.97095 0.91894 0.86404 1.42331 1.82556 1.04429 1.07965 1.19234 1.37761 0.92454 0.87523 0.91214 1.24709 1.02645 0.95252 0.98289 1.69651 1.56022 0.98992 1.33626 0.86193 0.78037 0.77266 0.84715 1.21750 1.21807 1.20800 1.22058 0.98770 0.97423 0.81952 0.90338 0.91086 0.90886 0.91584 0.91671 0.84530 0.82470 0.82513 0.84553 0.91163 0.90599 0.90118 0.89146 0.93563 0.90731 0.92586 0.96041 0.96004 0.78075 0.93552 0.91081 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 9.39 37.16 0.35 -1.02 16 2 C 0.08 0.76 2.48 -27.88 -0.07 0.69 16 3 H 0.08 0.62 7.52 -51.93 -0.39 0.23 16 4 O -0.35 -3.95 9.56 -54.58 -0.52 -4.48 16 5 C 0.10 0.74 5.92 36.01 0.21 0.95 16 6 C -0.04 -0.37 5.55 -104.31 -0.58 -0.95 16 7 C -0.15 -1.23 9.82 -39.44 -0.39 -1.61 16 8 C 0.10 0.81 11.18 -17.55 -0.20 0.62 16 9 N -0.48 -4.74 10.36 -13.25 -0.14 -4.88 16 10 C 0.10 0.77 11.18 -17.55 -0.20 0.57 16 11 C -0.15 -1.16 9.82 -39.44 -0.39 -1.54 16 12 C 0.53 7.32 7.13 -10.98 -0.08 7.24 16 13 O -0.52 -9.57 16.91 -13.79 -0.23 -9.80 16 14 N -0.61 -7.79 3.32 -170.38 -0.57 -8.36 16 15 C 0.09 0.92 6.15 -2.41 -0.01 0.90 16 16 C -0.12 -1.51 5.74 -24.46 -0.14 -1.66 16 17 C -0.08 -1.14 0.61 -152.68 -0.09 -1.24 16 18 C -0.13 -1.92 8.28 37.16 0.31 -1.61 16 19 C 0.17 3.20 5.08 -4.04 -0.02 3.18 16 20 N -0.73 -17.27 5.15 -59.91 -0.31 -17.58 16 21 C -0.24 -6.46 9.99 -15.05 -0.15 -6.61 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.20 13.06 55.49 0.72 -26.47 16 25 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 C 0.12 1.71 6.04 -3.07 -0.02 1.69 16 30 H 0.08 0.55 5.81 -51.93 -0.30 0.24 16 31 H 0.07 0.41 7.79 -51.93 -0.40 0.01 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.36 7.75 -51.93 -0.40 -0.05 16 34 H 0.07 0.40 8.04 -51.93 -0.42 -0.02 16 35 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 39 H 0.07 0.63 7.69 -51.93 -0.40 0.23 16 40 H 0.08 0.61 5.47 -51.93 -0.28 0.32 16 41 H 0.08 1.14 8.02 -51.93 -0.42 0.72 16 42 H 0.09 1.22 8.04 -51.93 -0.42 0.81 16 43 H 0.05 0.57 7.41 -51.93 -0.38 0.18 16 44 H 0.07 1.25 6.69 -51.93 -0.35 0.90 16 45 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 46 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.38 9.40 6.21 -40.82 -0.25 9.15 16 49 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 50 H 0.07 1.08 7.82 -51.93 -0.41 0.67 16 51 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 LS Contribution 412.10 15.07 6.21 6.21 Total: -1.00 -34.68 412.10 -9.57 -44.25 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -8.16 Total: 4.99 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.56 Total: -0.86 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.29 Total: -57.28 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.75 Total: -14.27 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.68 -9.57 -44.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754705522.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.418 kcal (2) G-P(sol) polarization free energy of solvation -34.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds