Wall clock time and date at job start Wed Apr 1 2020 04:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47012 * 2 1 4 4 O 1.42902 * 109.47399 * 240.00405 * 2 1 3 5 5 C 1.42894 * 114.00068 * 89.99663 * 4 2 1 6 6 C 1.50705 * 109.46985 * 180.02562 * 5 4 2 7 7 C 1.38656 * 120.78672 * 269.72193 * 6 5 4 8 8 C 1.38211 * 119.15735 * 179.79994 * 7 6 5 9 9 N 1.31864 * 120.76453 * 0.48201 * 8 7 6 10 10 C 1.31872 * 121.72876 * 359.74380 * 9 8 7 11 11 C 1.38204 * 120.76282 * 0.02562 * 10 9 8 12 12 C 1.50702 * 109.47240 * 119.99746 * 2 1 3 13 13 O 1.21280 * 119.99779 * 103.51681 * 12 2 1 14 14 N 1.34777 * 120.00163 * 283.24543 * 12 2 1 15 15 C 1.47417 * 125.64675 * 4.38164 * 14 12 2 16 16 C 1.55137 * 104.72239 * 155.81960 * 15 14 12 17 17 C 1.55159 * 101.47809 * 37.29759 * 16 15 14 18 18 C 1.52996 * 110.87132 * 82.77189 * 17 16 15 19 19 C 1.53007 * 110.71706 * 205.96681 * 17 16 15 20 20 N 1.46493 * 109.47058 * 293.52868 * 19 17 16 21 21 C 1.36950 * 119.99860 * 179.97438 * 20 19 17 22 22 H 1.07994 * 119.99822 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00019 * 179.97438 * 21 20 19 24 24 N 1.31629 * 119.99921 * 359.97438 * 23 21 20 25 25 Si 1.86791 * 120.00130 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47458 * 89.99963 * 25 23 21 27 27 H 1.48495 * 109.47609 * 210.00077 * 25 23 21 28 28 H 1.48502 * 109.47183 * 330.00045 * 25 23 21 29 29 C 1.47021 * 125.64736 * 184.69683 * 14 12 2 30 30 H 1.08996 * 109.47075 * 304.87568 * 1 2 3 31 31 H 1.09005 * 109.46980 * 64.87203 * 1 2 3 32 32 H 1.08997 * 109.47219 * 184.87064 * 1 2 3 33 33 H 1.09003 * 109.47467 * 299.99811 * 5 4 2 34 34 H 1.09003 * 109.47422 * 60.00229 * 5 4 2 35 35 H 1.07998 * 120.42183 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.61452 * 180.20479 * 8 7 6 37 37 H 1.08002 * 119.61877 * 179.97438 * 10 9 8 38 38 H 1.08004 * 120.41663 * 179.97438 * 11 10 9 39 39 H 1.08998 * 110.37101 * 274.75050 * 15 14 12 40 40 H 1.09003 * 110.36838 * 37.07504 * 15 14 12 41 41 H 1.08996 * 111.19046 * 279.19898 * 16 15 14 42 42 H 1.08996 * 110.93943 * 155.29028 * 16 15 14 43 43 H 1.09000 * 109.47217 * 306.38044 * 18 17 16 44 44 H 1.09002 * 109.47574 * 66.38548 * 18 17 16 45 45 H 1.09010 * 109.46792 * 186.38552 * 18 17 16 46 46 H 1.09004 * 109.46712 * 53.52706 * 19 17 16 47 47 H 1.08993 * 109.47279 * 173.52178 * 19 17 16 48 48 H 0.96999 * 120.00737 * 359.97438 * 20 19 17 49 49 H 0.97001 * 119.99812 * 179.97438 * 24 23 21 50 50 H 1.09001 * 109.88255 * 300.43891 * 29 14 12 51 51 H 1.09004 * 109.88011 * 61.44575 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1830 -2.2940 6 6 2.7003 -0.6283 -3.4614 7 6 4.0592 -0.8074 -3.6708 8 6 4.4807 -1.5613 -4.7498 9 7 3.6078 -2.0986 -5.5793 10 6 2.3085 -1.9454 -5.4137 11 6 1.8129 -1.2085 -4.3547 12 6 2.0324 -0.7104 1.2305 13 8 2.4659 -1.8397 1.1441 14 7 2.0049 -0.0886 2.4260 15 6 1.4295 1.2429 2.6888 16 6 1.0807 1.2303 4.2004 17 6 2.2677 0.4196 4.7845 18 6 3.4863 1.3184 5.0036 19 6 1.8632 -0.2682 6.0900 20 7 1.6024 0.7451 7.1153 21 6 1.2221 0.3633 8.3743 22 1 1.1139 -0.6848 8.6111 23 6 0.9755 1.3234 9.3460 24 7 1.1078 2.6008 9.0575 25 14 0.4574 0.8026 11.0634 26 1 1.6638 0.6146 11.9088 27 1 -0.4062 1.8530 11.6599 28 1 -0.2972 -0.4741 10.9869 29 6 2.5495 -0.6233 3.6826 30 1 -0.3633 0.5876 0.8431 31 1 -0.3633 0.4364 -0.9305 32 1 -0.3633 -1.0239 0.0873 33 1 1.2538 0.6547 -2.5589 34 1 2.9319 0.9515 -2.0450 35 1 4.7792 -0.3658 -2.9977 36 1 5.5373 -1.7084 -4.9179 37 1 1.6238 -2.4002 -6.1142 38 1 0.7477 -1.0862 -4.2247 39 1 2.1608 2.0217 2.4724 40 1 0.5287 1.3912 2.0933 41 1 0.1337 0.7221 4.3820 42 1 1.0624 2.2424 4.6045 43 1 3.7238 1.8409 4.0769 44 1 3.2654 2.0460 5.7846 45 1 4.3379 0.7086 5.3055 46 1 0.9619 -0.8588 5.9254 47 1 2.6700 -0.9215 6.4217 48 1 1.6992 1.6865 6.9026 49 1 0.9352 3.2718 9.7364 50 1 2.0583 -1.5647 3.9286 51 1 3.6236 -0.7807 3.5837 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754705522.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:31 Heat of formation + Delta-G solvation = -49.653573 kcal Electronic energy + Delta-G solvation = -30092.510181 eV Core-core repulsion = 25991.510260 eV Total energy + Delta-G solvation = -4100.999921 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.56425 -41.09444 -39.73255 -38.47617 -36.51668 -34.66699 -34.23499 -32.51839 -32.15644 -31.71125 -30.51495 -28.03348 -27.89227 -27.32702 -25.34866 -24.42999 -24.10088 -23.68628 -22.96305 -20.55799 -20.13469 -19.18455 -18.57030 -17.79997 -17.55996 -17.41290 -17.20850 -16.56901 -16.51853 -16.32377 -16.03634 -15.59225 -15.39958 -15.28061 -14.88979 -14.79958 -14.57893 -14.52753 -14.22225 -14.02407 -13.80313 -13.74138 -13.35022 -13.17117 -13.01046 -12.97081 -12.87611 -12.81675 -12.66284 -12.48392 -12.28737 -12.13848 -12.08926 -11.60606 -11.49927 -11.41917 -11.11748 -10.91893 -10.76717 -10.55200 -10.47677 -10.09910 -9.72600 -8.95981 -7.93676 -5.20596 0.12471 0.18854 1.47149 1.48922 1.49459 1.57695 1.66900 2.56894 2.63626 3.04316 3.27874 3.40022 3.55274 3.57627 3.62967 3.72677 3.76488 3.81353 3.91776 4.04338 4.10965 4.19583 4.19717 4.24116 4.31184 4.38588 4.39982 4.42667 4.49932 4.65080 4.68967 4.72537 4.77617 4.81882 4.87632 4.88121 4.96935 4.98021 5.03011 5.10255 5.19157 5.21796 5.25943 5.33417 5.34585 5.49186 5.51994 5.74540 5.99144 6.29312 6.45264 6.99271 7.05661 7.37313 8.11625 8.38393 9.29317 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.033645 B = 0.001678 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.015930 B =16685.734282 C =16823.268169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.082 3.918 3 H 0.120 0.880 4 O -0.382 6.382 5 C 0.095 3.905 6 C -0.060 4.060 7 C -0.160 4.160 8 C 0.082 3.918 9 N -0.512 5.512 10 C 0.083 3.917 11 C -0.154 4.154 12 C 0.521 3.479 13 O -0.578 6.578 14 N -0.610 5.610 15 C 0.097 3.903 16 C -0.115 4.115 17 C -0.069 4.069 18 C -0.125 4.125 19 C 0.167 3.833 20 N -0.733 5.733 21 C -0.246 4.246 22 H 0.069 0.931 23 C -0.068 4.068 24 N -0.963 5.963 25 Si 0.968 3.032 26 H -0.289 1.289 27 H -0.294 1.294 28 H -0.274 1.274 29 C 0.125 3.875 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.149 0.851 36 H 0.174 0.826 37 H 0.178 0.822 38 H 0.158 0.842 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.049 0.951 45 H 0.050 0.950 46 H 0.016 0.984 47 H 0.014 0.986 48 H 0.380 0.620 49 H 0.251 0.749 50 H 0.054 0.946 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.698 1.034 -29.038 29.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.022 3.978 3 H 0.138 0.862 4 O -0.301 6.301 5 C 0.020 3.980 6 C -0.068 4.068 7 C -0.179 4.179 8 C -0.074 4.074 9 N -0.222 5.222 10 C -0.073 4.073 11 C -0.173 4.173 12 C 0.311 3.689 13 O -0.457 6.457 14 N -0.344 5.344 15 C -0.024 4.024 16 C -0.153 4.153 17 C -0.070 4.070 18 C -0.182 4.182 19 C 0.040 3.960 20 N -0.377 5.377 21 C -0.378 4.378 22 H 0.087 0.913 23 C -0.261 4.261 24 N -0.614 5.614 25 Si 0.797 3.203 26 H -0.217 1.217 27 H -0.220 1.220 28 H -0.199 1.199 29 C 0.002 3.998 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.167 0.833 36 H 0.192 0.808 37 H 0.195 0.805 38 H 0.176 0.824 39 H 0.115 0.885 40 H 0.126 0.874 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.034 0.966 47 H 0.032 0.968 48 H 0.214 0.786 49 H 0.060 0.940 50 H 0.072 0.928 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.220 -0.414 -29.755 29.782 hybrid contribution -0.381 0.419 2.158 2.231 sum 0.839 0.005 -27.596 27.609 Atomic orbital electron populations 1.22291 0.91627 1.03318 1.05377 1.21943 0.96376 0.96628 0.82883 0.86228 1.88088 1.86946 1.35493 1.19560 1.21638 1.02056 0.91250 0.83088 1.20270 0.93964 0.97203 0.95364 1.22350 0.96441 0.99900 0.99234 1.23143 1.00600 0.93070 0.90564 1.67683 1.04389 1.20571 1.29557 1.23222 0.91890 0.95453 0.96782 1.22372 1.02149 0.97548 0.95275 1.20796 0.78081 0.85875 0.84197 1.90702 1.48467 1.20506 1.86054 1.48494 1.58524 1.20181 1.07199 1.22812 1.00002 0.83358 0.96270 1.22810 0.97148 1.01295 0.94017 1.21613 0.97055 0.95414 0.92903 1.21685 0.95732 0.98958 1.01867 1.20683 0.96467 0.91241 0.87615 1.42426 1.82277 1.05050 1.07969 1.19580 1.36786 0.92494 0.88949 0.91277 1.25429 1.03574 0.95387 1.01716 1.69782 1.57417 0.99741 1.34444 0.85226 0.77494 0.77005 0.80527 1.21658 1.22019 1.19913 1.21839 0.98658 0.96532 0.82779 0.89072 0.88284 0.93173 0.88937 0.90064 0.83340 0.80847 0.80461 0.82393 0.88510 0.87446 0.91388 0.89347 0.90599 0.93173 0.93039 0.96597 0.96762 0.78599 0.93981 0.92780 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 9.39 71.98 0.68 -1.41 16 2 C 0.08 1.37 2.48 29.85 0.07 1.44 16 3 H 0.12 1.13 7.52 -2.38 -0.02 1.11 16 4 O -0.38 -7.77 9.56 -130.48 -1.25 -9.02 16 5 C 0.10 1.14 5.92 71.24 0.42 1.56 16 6 C -0.06 -0.91 5.55 -19.66 -0.11 -1.02 16 7 C -0.16 -2.46 9.82 22.36 0.22 -2.24 16 8 C 0.08 1.36 11.18 84.68 0.95 2.31 16 9 N -0.51 -9.89 10.36 -195.84 -2.03 -11.91 16 10 C 0.08 1.26 11.18 84.68 0.95 2.21 16 11 C -0.15 -2.10 9.82 22.36 0.22 -1.88 16 12 C 0.52 13.66 7.13 87.66 0.62 14.28 16 13 O -0.58 -21.36 16.91 15.47 0.26 -21.09 16 14 N -0.61 -14.30 3.32 -811.36 -2.70 -17.00 16 15 C 0.10 1.63 6.15 86.94 0.53 2.16 16 16 C -0.11 -2.82 5.74 32.07 0.18 -2.64 16 17 C -0.07 -2.00 0.61 -50.99 -0.03 -2.03 16 18 C -0.13 -3.50 8.28 71.98 0.60 -2.90 16 19 C 0.17 6.46 5.08 86.38 0.44 6.90 16 20 N -0.73 -35.23 5.15 -343.46 -1.77 -37.00 16 21 C -0.25 -13.44 9.99 84.03 0.84 -12.60 16 22 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 23 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 24 N -0.96 -56.51 13.06 21.65 0.28 -56.23 16 25 Si 0.97 45.34 29.55 68.60 2.03 47.37 16 26 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 28 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 29 C 0.13 3.49 6.04 86.73 0.52 4.02 16 30 H 0.09 0.87 5.81 -2.39 -0.01 0.86 16 31 H 0.10 0.69 7.79 -2.38 -0.02 0.67 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 0.59 7.75 -2.39 -0.02 0.58 16 34 H 0.08 0.69 8.04 -2.39 -0.02 0.67 16 35 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16 37 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16 38 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.10 1.22 7.69 -2.39 -0.02 1.21 16 40 H 0.11 1.20 5.47 -2.39 -0.01 1.18 16 41 H 0.07 1.85 8.02 -2.39 -0.02 1.83 16 42 H 0.09 2.25 8.04 -2.39 -0.02 2.23 16 43 H 0.08 1.66 7.41 -2.39 -0.02 1.64 16 44 H 0.05 1.66 6.69 -2.39 -0.02 1.65 16 45 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.02 0.64 8.10 -2.38 -0.02 0.62 16 47 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.38 18.84 6.21 -92.71 -0.58 18.26 16 49 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 50 H 0.05 1.68 7.82 -2.39 -0.02 1.67 16 51 H 0.07 1.89 7.85 -2.38 -0.02 1.88 16 Total: -1.00 -77.37 412.10 2.75 -74.62 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.35 Total: 25.44 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 7.57 Total: 4.82 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -6.21 Total: -122.14 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.99 Total: -30.11 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -77.37 2.75 -74.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754705522.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.966 kcal (2) G-P(sol) polarization free energy of solvation -77.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds