Wall clock time and date at job start Wed Apr 1 2020 04:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.46941 * 2 1 4 4 O 1.42908 * 109.47069 * 119.99619 * 2 1 3 5 5 C 1.35915 * 116.99945 * 274.94559 * 4 2 1 6 6 C 1.39136 * 120.47126 * 5.36877 * 5 4 2 7 7 C 1.38538 * 118.37425 * 180.02562 * 6 5 4 8 8 C 1.38256 * 119.21815 * 359.97438 * 7 6 5 9 9 N 1.31849 * 120.88900 * 0.02562 * 8 7 6 10 10 C 1.31843 * 121.77605 * 359.70351 * 9 8 7 11 11 C 1.50702 * 109.47150 * 239.99545 * 2 1 3 12 12 O 1.21282 * 119.99690 * 255.03856 * 11 2 1 13 13 N 1.34771 * 119.99844 * 75.31868 * 11 2 1 14 14 C 1.46502 * 120.00005 * 5.09832 * 13 11 2 15 15 C 1.46498 * 119.99997 * 185.09355 * 13 11 2 16 16 C 1.53005 * 109.47344 * 239.99919 * 15 13 11 17 17 C 1.52994 * 109.46902 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47458 * 60.00068 * 17 16 15 19 19 N 1.46498 * 109.47113 * 179.97438 * 18 17 16 20 20 C 1.36933 * 120.00316 * 275.00179 * 19 18 17 21 21 H 1.08006 * 120.00016 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00450 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99701 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00421 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47265 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47252 * 119.99875 * 24 22 20 27 27 H 1.48501 * 109.47327 * 239.99831 * 24 22 20 28 28 C 1.52995 * 109.47339 * 300.00078 * 18 17 16 29 29 C 1.53001 * 109.46882 * 120.00235 * 15 13 11 30 30 H 1.09000 * 109.47375 * 175.05855 * 1 2 3 31 31 H 1.09002 * 109.47481 * 295.06025 * 1 2 3 32 32 H 1.08999 * 109.47427 * 55.05663 * 1 2 3 33 33 H 1.07996 * 120.82070 * 359.97235 * 6 5 4 34 34 H 1.07995 * 120.39801 * 180.02562 * 7 6 5 35 35 H 1.08000 * 119.55749 * 179.97438 * 8 7 6 36 36 H 1.08004 * 119.65885 * 180.29190 * 10 9 8 37 37 H 1.09006 * 109.47212 * 93.95810 * 14 13 11 38 38 H 1.09005 * 109.47220 * 213.95388 * 14 13 11 39 39 H 1.08999 * 109.46961 * 333.95736 * 14 13 11 40 40 H 1.08993 * 109.47085 * 0.02562 * 15 13 11 41 41 H 1.08993 * 109.47410 * 300.00267 * 16 15 13 42 42 H 1.09000 * 109.46723 * 60.00589 * 16 15 13 43 43 H 1.09004 * 109.47216 * 299.99763 * 17 16 15 44 44 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 45 45 H 1.09003 * 109.46669 * 59.99853 * 18 17 16 46 46 H 0.97006 * 119.99727 * 95.00630 * 19 18 17 47 47 H 0.97003 * 120.00104 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.46653 * 299.99888 * 28 18 17 49 49 H 1.08998 * 109.47244 * 179.97438 * 28 18 17 50 50 H 1.09002 * 109.46988 * 300.00349 * 29 15 13 51 51 H 1.09003 * 109.47036 * 60.00100 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1135 0.0631 2.3040 6 6 1.6651 1.3798 2.3366 7 6 1.7962 2.0909 3.5184 8 6 2.3631 1.4737 4.6180 9 7 2.7780 0.2239 4.5537 10 6 2.6667 -0.4887 3.4500 11 6 2.0323 -0.7105 -1.2304 12 8 2.4900 -1.8299 -1.1398 13 7 1.9780 -0.0998 -2.4306 14 6 1.5355 1.2937 -2.5240 15 6 2.3615 -0.8293 -3.6417 16 6 3.5326 -0.1141 -4.3186 17 6 3.9327 -0.8757 -5.5838 18 6 2.7433 -0.9287 -6.5448 19 7 3.1267 -1.6574 -7.7564 20 6 3.7562 -1.0009 -8.7800 21 1 3.9698 0.0544 -8.6942 22 6 4.1190 -1.6912 -9.9283 23 7 3.8582 -2.9771 -10.0331 24 14 4.9771 -0.7955 -11.3249 25 1 5.1529 0.6339 -10.9622 26 1 6.3061 -1.4125 -11.5661 27 1 4.1541 -0.8954 -12.5569 28 6 1.5722 -1.6438 -5.8680 29 6 1.1724 -0.8827 -4.6029 30 1 -0.3634 -1.0238 -0.0885 31 1 -0.3634 0.4353 0.9309 32 1 -0.3634 0.5886 -0.8424 33 1 1.2265 1.8368 1.4619 34 1 1.4587 3.1149 3.5802 35 1 2.4683 2.0231 5.5419 36 1 3.0137 -1.5114 3.4369 37 1 2.4034 1.9529 -2.5008 38 1 0.9925 1.4407 -3.4577 39 1 0.8815 1.5244 -1.6831 40 1 2.6593 -1.8435 -3.3760 41 1 3.2344 0.9000 -4.5844 42 1 4.3798 -0.0761 -3.6338 43 1 4.2308 -1.8900 -5.3183 44 1 4.7673 -0.3665 -6.0658 45 1 2.4453 0.0856 -6.8102 46 1 2.9344 -2.6051 -7.8337 47 1 4.1114 -3.4595 -10.8357 48 1 1.8704 -2.6581 -5.6025 49 1 0.7248 -1.6811 -6.5525 50 1 0.3380 -1.3921 -4.1207 51 1 0.8742 0.1315 -4.8687 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755276043.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:17 Heat of formation + Delta-G solvation = -23.630753 kcal Electronic energy + Delta-G solvation = -30561.314542 eV Core-core repulsion = 26461.443056 eV Total energy + Delta-G solvation = -4099.871486 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.37346 -40.36367 -38.79457 -37.76145 -35.64339 -33.74835 -32.72305 -32.44134 -30.82896 -30.47384 -30.35712 -27.87548 -27.09450 -25.28068 -24.24514 -23.73845 -23.04074 -22.31298 -21.17055 -19.56223 -19.36340 -18.97874 -17.54261 -17.26160 -17.04602 -16.65104 -16.24625 -16.19642 -15.47253 -15.14257 -14.89291 -14.46101 -14.31786 -14.04385 -13.96855 -13.84936 -13.59926 -13.54413 -13.18162 -12.98384 -12.90868 -12.74753 -12.61315 -12.32707 -12.11977 -12.00578 -11.85578 -11.70538 -11.45338 -10.92842 -10.79937 -10.76543 -10.69973 -10.29324 -10.22515 -10.14265 -10.02839 -9.90776 -9.75059 -9.59718 -8.90459 -8.87510 -8.77278 -6.95864 -5.77037 -3.05724 0.67832 0.77330 2.08433 2.28953 3.04688 3.35246 3.42046 3.47364 3.49893 3.91131 4.07137 4.11214 4.26590 4.31399 4.36160 4.57637 4.62498 4.63498 4.74604 4.83919 4.92713 4.99074 5.03081 5.14903 5.23228 5.26926 5.30728 5.46980 5.51038 5.52327 5.57999 5.58387 5.60706 5.71734 5.79167 5.83647 5.92285 5.99878 6.18331 6.21562 6.23619 6.37816 6.52010 6.57767 6.66706 6.73435 6.95034 7.08539 7.12638 7.52850 7.69422 7.87575 8.41635 9.52669 10.11336 10.45699 11.45695 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029161 B = 0.001791 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.971292 B =15628.498432 C =15694.109358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.066 3.934 3 H 0.095 0.905 4 O -0.277 6.277 5 C 0.084 3.916 6 C -0.171 4.171 7 C -0.130 4.130 8 C 0.055 3.945 9 N -0.446 5.446 10 C 0.078 3.922 11 C 0.518 3.482 12 O -0.512 6.512 13 N -0.604 5.604 14 C 0.063 3.937 15 C 0.141 3.859 16 C -0.120 4.120 17 C -0.133 4.133 18 C 0.178 3.822 19 N -0.725 5.725 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.122 4.122 29 C -0.119 4.119 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.046 0.954 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.062 0.938 49 H 0.067 0.933 50 H 0.060 0.940 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.390 13.175 26.826 31.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.006 3.994 3 H 0.113 0.887 4 O -0.188 6.188 5 C 0.035 3.965 6 C -0.197 4.197 7 C -0.150 4.150 8 C -0.102 4.102 9 N -0.155 5.155 10 C -0.081 4.081 11 C 0.303 3.697 12 O -0.386 6.386 13 N -0.338 5.338 14 C -0.080 4.080 15 C 0.039 3.961 16 C -0.160 4.160 17 C -0.174 4.174 18 C 0.068 3.932 19 N -0.366 5.366 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.581 5.581 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.160 4.160 29 C -0.158 4.158 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.176 0.824 36 H 0.183 0.817 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.081 0.919 49 H 0.086 0.914 50 H 0.079 0.921 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.652 12.095 27.429 31.201 hybrid contribution -0.016 0.956 -1.703 1.953 sum -8.669 13.051 25.726 30.121 Atomic orbital electron populations 1.22376 0.92240 1.04981 1.03898 1.22303 0.96066 0.96890 0.84141 0.88713 1.86264 1.80631 1.36473 1.15449 1.20275 0.96628 0.91225 0.88334 1.21776 1.03659 0.94054 1.00208 1.22014 0.98858 1.01134 0.92969 1.22711 0.97267 0.91326 0.98875 1.67770 1.14718 1.07470 1.25556 1.22301 0.98665 1.01035 0.86124 1.19949 0.79203 0.86685 0.83844 1.90760 1.43731 1.18992 1.85167 1.47877 1.66293 1.13219 1.06435 1.22011 1.00284 0.81964 1.03714 1.21319 0.95053 0.97321 0.82391 1.21851 0.96747 0.99563 0.97803 1.22248 1.01085 0.99857 0.94209 1.20219 0.90859 0.95264 0.86836 1.42440 1.70470 1.09614 1.14035 1.19277 1.29845 0.93363 0.94371 0.91185 1.24746 1.02015 0.95839 0.98465 1.69673 1.52737 1.07181 1.28470 0.86144 0.79046 0.78607 0.82548 1.20610 1.21907 1.21916 1.21763 0.99578 0.99492 0.95210 1.21811 0.96889 1.01116 0.95960 0.90251 0.90625 0.89677 0.84174 0.84361 0.82430 0.81689 0.92028 0.89926 0.91093 0.87978 0.92066 0.92529 0.92393 0.91621 0.93645 0.78274 0.93580 0.91947 0.91397 0.92138 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 8.87 37.15 0.33 -0.77 16 2 C 0.07 0.57 1.79 -27.89 -0.05 0.52 16 3 H 0.10 0.58 5.39 -51.93 -0.28 0.30 16 4 O -0.28 -3.05 9.39 -38.92 -0.37 -3.41 16 5 C 0.08 0.77 6.60 -39.08 -0.26 0.52 16 6 C -0.17 -1.14 8.32 -39.14 -0.33 -1.47 16 7 C -0.13 -0.75 10.11 -39.46 -0.40 -1.15 16 8 C 0.05 0.39 11.18 -17.54 -0.20 0.19 16 9 N -0.45 -4.33 10.36 -13.13 -0.14 -4.47 16 10 C 0.08 0.75 11.14 -17.38 -0.19 0.56 16 11 C 0.52 6.29 6.96 -10.99 -0.08 6.22 16 12 O -0.51 -8.63 15.91 -13.89 -0.22 -8.86 16 13 N -0.60 -6.31 2.76 -173.93 -0.48 -6.79 16 14 C 0.06 0.41 9.07 59.85 0.54 0.95 16 15 C 0.14 1.81 2.52 -67.93 -0.17 1.64 16 16 C -0.12 -1.63 5.21 -26.73 -0.14 -1.77 16 17 C -0.13 -2.31 5.50 -26.73 -0.15 -2.45 16 18 C 0.18 3.37 2.77 -67.93 -0.19 3.18 16 19 N -0.73 -17.84 5.12 -53.43 -0.27 -18.11 16 20 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 21 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 23 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 24 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 28 C -0.12 -1.92 5.39 -26.76 -0.14 -2.06 16 29 C -0.12 -1.46 5.17 -26.75 -0.14 -1.60 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.38 7.02 -51.93 -0.36 0.01 16 32 H 0.08 0.36 6.28 -51.93 -0.33 0.04 16 33 H 0.14 0.61 5.67 -52.49 -0.30 0.31 16 34 H 0.14 0.39 8.06 -52.49 -0.42 -0.04 16 35 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.17 1.45 8.06 -52.48 -0.42 1.02 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.50 6.44 -51.93 -0.33 0.16 16 39 H 0.07 0.27 4.50 -51.93 -0.23 0.04 16 40 H 0.10 1.58 6.91 -51.93 -0.36 1.23 16 41 H 0.06 0.74 7.67 -51.93 -0.40 0.35 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 46 H 0.38 10.12 7.80 -40.82 -0.32 9.81 16 47 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 49 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.06 0.71 6.68 -51.93 -0.35 0.36 16 LS Contribution 401.37 15.07 6.05 6.05 Total: -1.00 -34.55 401.37 -9.40 -43.95 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.87 Total: 6.43 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -1.80 Total: -4.64 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.17 Total: -56.74 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.59 Total: -12.27 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.55 -9.40 -43.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755276043.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.319 kcal (2) G-P(sol) polarization free energy of solvation -34.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds