Wall clock time and date at job start Wed Apr 1 2020 04:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.46941 * 2 1 4 4 O 1.42908 * 109.47069 * 119.99619 * 2 1 3 5 5 C 1.35915 * 116.99945 * 274.94559 * 4 2 1 6 6 C 1.39136 * 120.47126 * 5.36877 * 5 4 2 7 7 C 1.38538 * 118.37425 * 180.02562 * 6 5 4 8 8 C 1.38256 * 119.21815 * 359.97438 * 7 6 5 9 9 N 1.31849 * 120.88900 * 0.02562 * 8 7 6 10 10 C 1.31843 * 121.77605 * 359.70351 * 9 8 7 11 11 C 1.50702 * 109.47150 * 239.99545 * 2 1 3 12 12 O 1.21282 * 119.99690 * 255.03856 * 11 2 1 13 13 N 1.34771 * 119.99844 * 75.31868 * 11 2 1 14 14 C 1.46502 * 120.00005 * 5.09832 * 13 11 2 15 15 C 1.46498 * 119.99997 * 185.09355 * 13 11 2 16 16 C 1.53005 * 109.47344 * 239.99919 * 15 13 11 17 17 C 1.52994 * 109.46902 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47458 * 60.00068 * 17 16 15 19 19 N 1.46498 * 109.47113 * 179.97438 * 18 17 16 20 20 C 1.36933 * 120.00316 * 275.00179 * 19 18 17 21 21 H 1.08006 * 120.00016 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00450 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99701 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00421 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47265 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47252 * 119.99875 * 24 22 20 27 27 H 1.48501 * 109.47327 * 239.99831 * 24 22 20 28 28 C 1.52995 * 109.47339 * 300.00078 * 18 17 16 29 29 C 1.53001 * 109.46882 * 120.00235 * 15 13 11 30 30 H 1.09000 * 109.47375 * 175.05855 * 1 2 3 31 31 H 1.09002 * 109.47481 * 295.06025 * 1 2 3 32 32 H 1.08999 * 109.47427 * 55.05663 * 1 2 3 33 33 H 1.07996 * 120.82070 * 359.97235 * 6 5 4 34 34 H 1.07995 * 120.39801 * 180.02562 * 7 6 5 35 35 H 1.08000 * 119.55749 * 179.97438 * 8 7 6 36 36 H 1.08004 * 119.65885 * 180.29190 * 10 9 8 37 37 H 1.09006 * 109.47212 * 93.95810 * 14 13 11 38 38 H 1.09005 * 109.47220 * 213.95388 * 14 13 11 39 39 H 1.08999 * 109.46961 * 333.95736 * 14 13 11 40 40 H 1.08993 * 109.47085 * 0.02562 * 15 13 11 41 41 H 1.08993 * 109.47410 * 300.00267 * 16 15 13 42 42 H 1.09000 * 109.46723 * 60.00589 * 16 15 13 43 43 H 1.09004 * 109.47216 * 299.99763 * 17 16 15 44 44 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 45 45 H 1.09003 * 109.46669 * 59.99853 * 18 17 16 46 46 H 0.97006 * 119.99727 * 95.00630 * 19 18 17 47 47 H 0.97003 * 120.00104 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.46653 * 299.99888 * 28 18 17 49 49 H 1.08998 * 109.47244 * 179.97438 * 28 18 17 50 50 H 1.09002 * 109.46988 * 300.00349 * 29 15 13 51 51 H 1.09003 * 109.47036 * 60.00100 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1135 0.0631 2.3040 6 6 1.6651 1.3798 2.3366 7 6 1.7962 2.0909 3.5184 8 6 2.3631 1.4737 4.6180 9 7 2.7780 0.2239 4.5537 10 6 2.6667 -0.4887 3.4500 11 6 2.0323 -0.7105 -1.2304 12 8 2.4900 -1.8299 -1.1398 13 7 1.9780 -0.0998 -2.4306 14 6 1.5355 1.2937 -2.5240 15 6 2.3615 -0.8293 -3.6417 16 6 3.5326 -0.1141 -4.3186 17 6 3.9327 -0.8757 -5.5838 18 6 2.7433 -0.9287 -6.5448 19 7 3.1267 -1.6574 -7.7564 20 6 3.7562 -1.0009 -8.7800 21 1 3.9698 0.0544 -8.6942 22 6 4.1190 -1.6912 -9.9283 23 7 3.8582 -2.9771 -10.0331 24 14 4.9771 -0.7955 -11.3249 25 1 5.1529 0.6339 -10.9622 26 1 6.3061 -1.4125 -11.5661 27 1 4.1541 -0.8954 -12.5569 28 6 1.5722 -1.6438 -5.8680 29 6 1.1724 -0.8827 -4.6029 30 1 -0.3634 -1.0238 -0.0885 31 1 -0.3634 0.4353 0.9309 32 1 -0.3634 0.5886 -0.8424 33 1 1.2265 1.8368 1.4619 34 1 1.4587 3.1149 3.5802 35 1 2.4683 2.0231 5.5419 36 1 3.0137 -1.5114 3.4369 37 1 2.4034 1.9529 -2.5008 38 1 0.9925 1.4407 -3.4577 39 1 0.8815 1.5244 -1.6831 40 1 2.6593 -1.8435 -3.3760 41 1 3.2344 0.9000 -4.5844 42 1 4.3798 -0.0761 -3.6338 43 1 4.2308 -1.8900 -5.3183 44 1 4.7673 -0.3665 -6.0658 45 1 2.4453 0.0856 -6.8102 46 1 2.9344 -2.6051 -7.8337 47 1 4.1114 -3.4595 -10.8357 48 1 1.8704 -2.6581 -5.6025 49 1 0.7248 -1.6811 -6.5525 50 1 0.3380 -1.3921 -4.1207 51 1 0.8742 0.1315 -4.8687 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755276043.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:16 Heat of formation + Delta-G solvation = -45.801225 kcal Electronic energy + Delta-G solvation = -30562.275926 eV Core-core repulsion = 26461.443056 eV Total energy + Delta-G solvation = -4100.832870 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.06044 -41.17064 -39.70605 -38.79531 -36.84975 -35.28108 -33.52410 -33.16836 -32.32887 -31.72102 -31.02002 -29.21715 -27.86250 -26.13966 -25.41036 -24.67513 -23.90663 -23.57485 -22.35525 -20.81681 -20.30383 -19.60393 -19.09202 -18.22439 -17.88257 -17.44138 -17.14024 -16.91539 -16.75431 -16.19049 -15.85959 -15.43290 -15.38344 -15.21777 -14.95742 -14.83278 -14.65958 -14.46382 -14.10439 -14.06889 -13.91219 -13.48336 -13.36092 -13.30150 -13.15083 -13.08983 -12.86166 -12.83009 -12.53537 -12.41866 -12.29150 -12.17511 -12.07342 -11.97720 -11.64118 -11.52121 -11.14179 -10.90321 -10.84983 -10.68964 -10.57309 -9.69441 -9.47944 -8.99410 -7.93027 -5.21342 0.14433 0.23806 1.32210 1.45112 1.47207 1.48027 1.57766 2.33698 2.56942 2.79818 3.23124 3.40198 3.52983 3.58595 3.72824 3.75261 3.77490 3.83473 3.88460 3.90706 4.14506 4.18002 4.22563 4.32300 4.35930 4.38443 4.48520 4.54425 4.57217 4.60759 4.62255 4.73435 4.77049 4.80566 4.91134 5.00371 5.03000 5.08095 5.10916 5.11766 5.15843 5.22481 5.26025 5.41132 5.48796 5.53740 5.55357 5.63182 6.11753 6.29483 6.31095 6.97075 7.00978 7.34757 8.12561 8.34476 9.31001 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029161 B = 0.001791 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.971292 B =15628.498432 C =15694.109358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.070 3.930 3 H 0.128 0.872 4 O -0.309 6.309 5 C 0.067 3.933 6 C -0.165 4.165 7 C -0.119 4.119 8 C 0.046 3.954 9 N -0.475 5.475 10 C 0.049 3.951 11 C 0.509 3.491 12 O -0.575 6.575 13 N -0.597 5.597 14 C 0.050 3.950 15 C 0.145 3.855 16 C -0.106 4.106 17 C -0.125 4.125 18 C 0.174 3.826 19 N -0.741 5.741 20 C -0.233 4.233 21 H 0.079 0.921 22 C -0.081 4.081 23 N -0.973 5.973 24 Si 0.971 3.029 25 H -0.263 1.263 26 H -0.298 1.298 27 H -0.294 1.294 28 C -0.114 4.114 29 C -0.105 4.105 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.172 0.828 34 H 0.178 0.822 35 H 0.183 0.817 36 H 0.154 0.846 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.055 0.945 43 H 0.034 0.966 44 H 0.047 0.953 45 H 0.053 0.947 46 H 0.370 0.630 47 H 0.249 0.751 48 H 0.045 0.955 49 H 0.065 0.935 50 H 0.072 0.928 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.144 17.954 28.025 35.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.010 3.990 3 H 0.146 0.854 4 O -0.222 6.222 5 C 0.020 3.980 6 C -0.191 4.191 7 C -0.138 4.138 8 C -0.111 4.111 9 N -0.185 5.185 10 C -0.109 4.109 11 C 0.297 3.703 12 O -0.453 6.453 13 N -0.329 5.329 14 C -0.091 4.091 15 C 0.042 3.958 16 C -0.145 4.145 17 C -0.166 4.166 18 C 0.066 3.934 19 N -0.379 5.379 20 C -0.365 4.365 21 H 0.097 0.903 22 C -0.273 4.273 23 N -0.624 5.624 24 Si 0.801 3.199 25 H -0.187 1.187 26 H -0.226 1.226 27 H -0.222 1.222 28 C -0.153 4.153 29 C -0.143 4.143 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.131 0.869 33 H 0.189 0.811 34 H 0.195 0.805 35 H 0.200 0.800 36 H 0.171 0.829 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.074 0.926 43 H 0.053 0.947 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.201 0.799 47 H 0.058 0.942 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.090 0.910 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.428 16.952 28.665 34.896 hybrid contribution 0.523 -0.468 -1.965 2.086 sum -9.905 16.484 26.700 32.905 Atomic orbital electron populations 1.22402 0.90128 1.04389 1.06025 1.22437 0.97418 0.97327 0.81776 0.85430 1.86224 1.81383 1.38076 1.16483 1.20336 0.97701 0.92453 0.87542 1.22142 1.02549 0.92683 1.01701 1.22440 0.97056 1.02552 0.91746 1.23289 0.96591 0.90621 1.00624 1.67742 1.15961 1.09003 1.25788 1.22251 1.00306 1.01189 0.87124 1.20725 0.78196 0.86147 0.85234 1.90735 1.46590 1.21849 1.86153 1.47860 1.65384 1.14685 1.04985 1.22425 1.01676 0.79133 1.05880 1.20997 0.95084 0.96063 0.83641 1.21696 0.97084 1.00155 0.95602 1.22048 0.99742 0.99051 0.95730 1.20477 0.92322 0.95235 0.85356 1.42711 1.70446 1.09266 1.15525 1.19687 1.28325 0.93759 0.94701 0.90308 1.25571 1.03829 0.96649 1.01266 1.69838 1.54804 1.08803 1.28950 0.85098 0.77284 0.78280 0.79283 1.18689 1.22562 1.22161 1.21647 0.98075 0.98902 0.96713 1.21694 0.96729 1.02172 0.93750 0.92459 0.88819 0.86915 0.81107 0.80460 0.79999 0.82867 0.90679 0.88745 0.87852 0.91510 0.89391 0.92624 0.94673 0.93439 0.92872 0.79910 0.94238 0.93625 0.91650 0.90952 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 8.87 71.98 0.64 -0.92 16 2 C 0.07 1.04 1.79 29.85 0.05 1.09 16 3 H 0.13 0.98 5.39 -2.39 -0.01 0.97 16 4 O -0.31 -6.74 9.39 -74.00 -0.69 -7.43 16 5 C 0.07 1.19 6.60 22.60 0.15 1.34 16 6 C -0.16 -1.62 8.32 22.56 0.19 -1.43 16 7 C -0.12 -0.89 10.11 22.35 0.23 -0.66 16 8 C 0.05 0.55 11.18 84.69 0.95 1.50 16 9 N -0.48 -9.16 10.36 -195.44 -2.02 -11.19 16 10 C 0.05 0.99 11.14 84.80 0.94 1.94 16 11 C 0.51 11.91 6.96 87.66 0.61 12.52 16 12 O -0.57 -20.28 15.91 15.56 0.25 -20.03 16 13 N -0.60 -11.00 2.76 -822.58 -2.27 -13.27 16 14 C 0.05 0.39 9.07 127.77 1.16 1.54 16 15 C 0.15 3.58 2.52 44.99 0.11 3.69 16 16 C -0.11 -2.72 5.21 30.59 0.16 -2.56 16 17 C -0.12 -4.37 5.50 30.59 0.17 -4.20 16 18 C 0.17 6.54 2.77 44.99 0.12 6.67 16 19 N -0.74 -37.16 5.12 -322.95 -1.65 -38.81 16 20 C -0.23 -12.78 9.93 84.03 0.83 -11.94 16 21 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 22 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 23 N -0.97 -60.30 13.06 21.65 0.28 -60.01 16 24 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 25 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 26 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 27 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 28 C -0.11 -3.58 5.39 30.58 0.16 -3.42 16 29 C -0.10 -2.35 5.17 30.58 0.16 -2.19 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.54 7.02 -2.39 -0.02 0.53 16 32 H 0.11 0.36 6.28 -2.39 -0.01 0.35 16 33 H 0.17 0.50 5.67 -2.91 -0.02 0.48 16 34 H 0.18 -0.07 8.06 -2.91 -0.02 -0.09 16 35 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 37 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 38 H 0.09 0.58 6.44 -2.38 -0.02 0.57 16 39 H 0.10 0.15 4.50 -2.39 -0.01 0.13 16 40 H 0.07 2.16 6.91 -2.39 -0.02 2.15 16 41 H 0.09 1.81 7.67 -2.39 -0.02 1.80 16 42 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 46 H 0.37 20.31 7.80 -92.70 -0.72 19.59 16 47 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 48 H 0.04 1.56 8.14 -2.38 -0.02 1.55 16 49 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.09 1.61 6.68 -2.39 -0.02 1.60 16 Total: -1.00 -81.48 401.37 3.24 -78.25 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.22 Total: 25.61 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 7.10 Total: -1.27 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -5.67 Total: -123.28 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.45 Total: -27.47 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -81.48 3.24 -78.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755276043.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.444 kcal (2) G-P(sol) polarization free energy of solvation -81.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds