Wall clock time and date at job start Wed Apr 1 2020 05:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46567 * 2 1 4 4 C 1.46504 * 120.00004 * 269.99264 * 3 2 1 5 5 C 1.50693 * 109.47426 * 270.00795 * 4 3 2 6 6 H 1.08006 * 120.00034 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00176 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00229 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99733 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46735 * 90.00550 * 9 7 5 11 11 H 1.48505 * 109.47163 * 210.00368 * 9 7 5 12 12 H 1.48495 * 109.47174 * 330.00665 * 9 7 5 13 13 C 1.34771 * 120.00121 * 90.00102 * 3 2 1 14 14 O 1.21276 * 120.00203 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00178 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47292 * 180.02562 * 15 13 3 17 17 C 1.46956 * 110.99677 * 170.00200 * 16 15 13 18 18 C 1.53057 * 109.36162 * 183.18894 * 17 16 15 19 19 N 1.46954 * 109.36263 * 301.59585 * 18 17 16 20 20 C 1.39945 * 111.00063 * 183.18830 * 19 18 17 21 21 C 1.38855 * 120.01854 * 235.93237 * 20 19 18 22 22 C 1.38111 * 119.97834 * 179.71917 * 21 20 19 23 23 C 1.38698 * 120.01935 * 0.57284 * 22 21 20 24 24 O 1.36002 * 119.98185 * 179.70042 * 23 22 21 25 25 C 1.38700 * 120.03602 * 359.67603 * 23 22 21 26 26 C 1.38106 * 120.02246 * 0.04673 * 25 23 22 27 27 C 1.46956 * 110.88042 * 59.32532 * 19 18 17 28 28 C 1.46954 * 110.99900 * 293.79852 * 16 15 13 29 29 H 1.09004 * 109.46742 * 60.00844 * 1 2 3 30 30 H 1.09000 * 109.46654 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47430 * 299.99905 * 1 2 3 32 32 H 1.08997 * 109.47483 * 240.00519 * 2 1 3 33 33 H 1.08996 * 109.47060 * 119.99220 * 2 1 3 34 34 H 1.09007 * 109.46569 * 30.00870 * 4 3 2 35 35 H 1.08996 * 109.47099 * 149.99782 * 4 3 2 36 36 H 0.97000 * 119.99850 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.46825 * 60.00356 * 15 13 3 38 38 H 1.09002 * 109.47091 * 300.00396 * 15 13 3 39 39 H 1.09002 * 109.48908 * 303.15220 * 17 16 15 40 40 H 1.09002 * 109.49369 * 63.22349 * 17 16 15 41 41 H 1.08997 * 109.48880 * 61.56749 * 18 17 16 42 42 H 1.09004 * 109.48844 * 181.62946 * 18 17 16 43 43 H 1.07996 * 120.01559 * 359.97286 * 21 20 19 44 44 H 1.07999 * 119.99146 * 180.27224 * 22 21 20 45 45 H 0.96702 * 113.99847 * 269.97377 * 24 23 22 46 46 H 1.08004 * 119.99123 * 180.02562 * 25 23 22 47 47 H 1.08001 * 120.01007 * 179.97438 * 26 25 23 48 48 H 1.09002 * 109.48908 * 180.71202 * 27 19 18 49 49 H 1.09002 * 109.49369 * 60.64073 * 27 19 18 50 50 H 1.08997 * 109.49355 * 296.78047 * 28 16 15 51 51 H 1.09003 * 109.49032 * 56.82589 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0957 7 6 4.1494 2.3906 -2.8774 8 7 5.3916 2.1843 -3.2568 9 14 3.0130 3.4361 -3.9287 10 1 3.1158 4.8562 -3.5068 11 1 3.4066 3.3138 -5.3554 12 1 1.6135 2.9695 -3.7595 13 6 2.2428 2.0167 1.1671 14 8 2.6474 3.1600 1.1672 15 6 1.9912 1.3065 2.4723 16 7 2.3089 2.2067 3.5888 17 6 1.8556 1.6406 4.8669 18 6 2.1327 2.6411 5.9917 19 7 3.5704 2.9421 6.0327 20 6 3.8731 3.7997 7.0964 21 6 4.5254 5.0017 6.8557 22 6 4.8185 5.8501 7.9053 23 6 4.4722 5.4964 9.2009 24 8 4.7666 6.3296 10.2347 25 6 3.8252 4.2936 9.4428 26 6 3.5262 3.4466 8.3938 27 6 4.0237 3.5082 4.7546 28 6 3.7467 2.5078 3.6298 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.5816 1.6877 -2.0284 35 1 2.0954 3.1411 -1.1385 36 1 5.7177 2.5748 -4.0827 37 1 2.6212 0.4189 2.5302 38 1 0.9432 1.0126 2.5298 39 1 0.7858 1.4380 4.8159 40 1 2.3928 0.7131 5.0649 41 1 1.5740 3.5587 5.8079 42 1 1.8237 2.2115 6.9447 43 1 4.7998 5.2749 5.8475 44 1 5.3219 6.7870 7.7178 45 1 5.6330 6.1704 10.6336 46 1 3.5555 4.0191 10.4520 47 1 3.0228 2.5099 8.5824 48 1 5.0935 3.7109 4.8056 49 1 3.4866 4.4358 4.5567 50 1 4.3053 1.5901 3.8136 51 1 4.0557 2.9370 2.6767 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051154212.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:51 Heat of formation + Delta-G solvation = -17.739852 kcal Electronic energy + Delta-G solvation = -30731.097633 eV Core-core repulsion = 26631.481596 eV Total energy + Delta-G solvation = -4099.616038 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.68163 -39.54921 -38.65160 -36.93790 -35.41604 -34.65445 -32.73016 -31.83277 -30.65107 -30.42747 -29.99381 -28.26766 -26.88094 -24.63976 -24.46130 -22.99818 -22.21634 -22.14180 -21.67880 -19.94422 -18.64071 -18.35066 -17.50279 -16.94124 -16.57764 -16.10396 -15.86624 -15.70340 -15.25323 -15.02012 -14.78969 -14.49750 -14.31041 -14.25580 -13.95425 -13.78348 -13.65118 -13.48713 -13.05228 -12.67456 -12.62250 -12.44063 -12.25580 -12.20782 -11.95844 -11.91156 -11.66435 -11.43293 -11.34485 -11.06845 -11.01400 -10.96112 -10.67290 -10.58872 -10.50376 -10.15806 -9.77008 -9.55323 -9.24582 -9.00466 -8.59994 -8.23188 -7.92453 -7.71832 -6.10039 -4.08661 1.01161 1.10530 3.27353 3.28349 3.33826 3.34238 3.36404 3.52719 3.61959 4.03183 4.10486 4.38610 4.55318 4.67614 4.71273 4.86342 4.97910 5.04642 5.09131 5.16984 5.19738 5.24203 5.27710 5.31123 5.36503 5.42513 5.46308 5.49354 5.55116 5.59834 5.70233 5.71589 5.75394 5.86121 5.94796 5.96711 6.05399 6.12237 6.18279 6.21691 6.37192 6.38923 6.67570 6.77581 6.87655 6.97142 7.04987 7.09778 7.35663 7.42654 7.60466 8.25954 8.45963 8.91879 9.00748 9.50616 11.03274 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015872 B = 0.002251 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.684576 B =12435.547433 C =13700.518430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.524 6.524 15 C 0.039 3.961 16 N -0.522 5.522 17 C 0.055 3.945 18 C 0.063 3.937 19 N -0.492 5.492 20 C 0.111 3.889 21 C -0.154 4.154 22 C -0.116 4.116 23 C 0.069 3.931 24 O -0.501 6.501 25 C -0.120 4.120 26 C -0.127 4.127 27 C 0.056 3.944 28 C 0.051 3.949 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.043 0.957 41 H 0.054 0.946 42 H 0.084 0.916 43 H 0.135 0.865 44 H 0.128 0.872 45 H 0.385 0.615 46 H 0.128 0.872 47 H 0.128 0.872 48 H 0.086 0.914 49 H 0.059 0.941 50 H 0.037 0.963 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.469 -1.790 23.315 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.400 6.400 15 C -0.092 4.092 16 N -0.247 5.247 17 C -0.073 4.073 18 C -0.062 4.062 19 N -0.207 5.207 20 C 0.013 3.987 21 C -0.174 4.174 22 C -0.135 4.135 23 C 0.024 3.976 24 O -0.311 6.311 25 C -0.139 4.139 26 C -0.148 4.148 27 C -0.070 4.070 28 C -0.077 4.077 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.152 0.848 44 H 0.146 0.854 45 H 0.240 0.760 46 H 0.146 0.854 47 H 0.146 0.854 48 H 0.104 0.896 49 H 0.077 0.923 50 H 0.056 0.944 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.714 -0.955 22.942 23.923 hybrid contribution 0.158 0.094 -0.557 0.587 sum -6.556 -0.861 22.384 23.341 Atomic orbital electron populations 1.22235 0.96759 1.01543 1.02277 1.21438 0.93407 0.83936 1.03025 1.47948 1.64445 1.13317 1.06991 1.19626 0.97221 0.93392 0.80059 1.21315 0.95329 1.32826 1.07096 0.90864 1.24859 0.94986 0.95819 0.97375 1.69897 1.15123 1.45024 1.23579 0.86851 0.81466 0.81624 0.79744 1.19916 1.21114 1.19097 1.20131 0.78578 0.87037 0.84705 1.90630 1.44773 1.17823 1.86776 1.22035 1.02381 0.94302 0.90510 1.61814 1.17316 1.43856 1.01699 1.22207 1.00661 0.95885 0.88568 1.22280 0.85608 0.99433 0.98891 1.59353 1.16511 1.41598 1.03288 1.19053 0.97724 0.90248 0.91679 1.21290 1.03215 0.93045 0.99898 1.21288 1.00218 0.99926 0.92055 1.18374 1.01458 0.90597 0.87124 1.84866 1.40530 1.57579 1.48078 1.21245 0.99929 0.93238 0.99516 1.20656 1.03319 1.00165 0.90613 1.22374 1.00826 0.97347 0.86491 1.22405 0.87042 0.98043 1.00192 0.92191 0.92010 0.92964 0.89728 0.91591 0.95355 0.94600 0.92581 0.92212 0.88437 0.89857 0.93845 0.92733 0.89751 0.84774 0.85429 0.75966 0.85428 0.85388 0.89572 0.92262 0.94434 0.87073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.16 0.38 -1.66 16 2 C 0.11 1.58 5.93 -4.04 -0.02 1.55 16 3 N -0.59 -11.78 2.46 -175.06 -0.43 -12.21 16 4 C 0.22 5.22 4.23 -5.19 -0.02 5.20 16 5 C -0.53 -14.89 9.94 -34.44 -0.34 -15.23 16 6 H 0.07 2.27 8.06 -52.48 -0.42 1.85 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 9 Si 0.88 21.47 27.47 -169.99 -4.67 16.81 16 10 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 13 C 0.51 9.97 7.37 -10.99 -0.08 9.89 16 14 O -0.52 -12.39 13.92 5.56 0.08 -12.31 16 15 C 0.04 0.55 4.00 -4.98 -0.02 0.53 16 16 N -0.52 -7.37 4.45 -235.90 -1.05 -8.41 16 17 C 0.06 0.59 5.61 -3.76 -0.02 0.57 16 18 C 0.06 0.65 5.38 -3.77 -0.02 0.63 16 19 N -0.49 -5.68 4.76 -170.90 -0.81 -6.49 16 20 C 0.11 1.23 5.64 -83.69 -0.47 0.75 16 21 C -0.15 -1.67 8.82 -39.40 -0.35 -2.02 16 22 C -0.12 -1.17 9.98 -39.46 -0.39 -1.56 16 23 C 0.07 0.68 6.70 -39.24 -0.26 0.42 16 24 O -0.50 -4.36 13.51 -19.75 -0.27 -4.62 16 25 C -0.12 -1.10 9.98 -39.46 -0.39 -1.50 16 26 C -0.13 -1.22 9.19 -39.40 -0.36 -1.59 16 27 C 0.06 0.72 4.30 -3.76 -0.02 0.71 16 28 C 0.05 0.76 5.26 -3.77 -0.02 0.74 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.59 7.22 -51.93 -0.37 0.21 16 32 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.07 0.82 6.44 -51.93 -0.33 0.49 16 34 H 0.03 0.65 7.13 -51.92 -0.37 0.28 16 35 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.06 0.79 7.38 -51.93 -0.38 0.41 16 38 H 0.10 1.15 7.07 -51.93 -0.37 0.78 16 39 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.69 6.82 -51.93 -0.35 0.34 16 43 H 0.13 1.40 5.81 -52.49 -0.30 1.10 16 44 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 45 H 0.39 1.50 9.06 45.56 0.41 1.91 16 46 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 47 H 0.13 1.03 7.18 -52.49 -0.38 0.66 16 48 H 0.09 1.03 7.16 -51.93 -0.37 0.66 16 49 H 0.06 0.82 7.60 -51.93 -0.39 0.42 16 50 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 51 H 0.11 2.05 5.85 -51.93 -0.30 1.75 16 LS Contribution 400.20 15.07 6.03 6.03 Total: -1.00 -34.99 400.20 -10.13 -45.12 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.27 Total: 3.35 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -2.52 Total: -0.57 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -1.52 Total: -53.79 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.19 Total: -16.93 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.99 -10.13 -45.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051154212.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.377 kcal (2) G-P(sol) polarization free energy of solvation -34.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds