Wall clock time and date at job start Wed Apr 1 2020 05:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46567 * 2 1 4 4 C 1.46504 * 120.00004 * 269.99264 * 3 2 1 5 5 C 1.50693 * 109.47426 * 270.00795 * 4 3 2 6 6 H 1.08006 * 120.00034 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00176 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00229 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99733 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46735 * 90.00550 * 9 7 5 11 11 H 1.48505 * 109.47163 * 210.00368 * 9 7 5 12 12 H 1.48495 * 109.47174 * 330.00665 * 9 7 5 13 13 C 1.34771 * 120.00121 * 90.00102 * 3 2 1 14 14 O 1.21276 * 120.00203 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00178 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47292 * 180.02562 * 15 13 3 17 17 C 1.46956 * 110.99677 * 170.00200 * 16 15 13 18 18 C 1.53057 * 109.36162 * 183.18894 * 17 16 15 19 19 N 1.46954 * 109.36263 * 301.59585 * 18 17 16 20 20 C 1.39945 * 111.00063 * 183.18830 * 19 18 17 21 21 C 1.38855 * 120.01854 * 235.93237 * 20 19 18 22 22 C 1.38111 * 119.97834 * 179.71917 * 21 20 19 23 23 C 1.38698 * 120.01935 * 0.57284 * 22 21 20 24 24 O 1.36002 * 119.98185 * 179.70042 * 23 22 21 25 25 C 1.38700 * 120.03602 * 359.67603 * 23 22 21 26 26 C 1.38106 * 120.02246 * 0.04673 * 25 23 22 27 27 C 1.46956 * 110.88042 * 59.32532 * 19 18 17 28 28 C 1.46954 * 110.99900 * 293.79852 * 16 15 13 29 29 H 1.09004 * 109.46742 * 60.00844 * 1 2 3 30 30 H 1.09000 * 109.46654 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47430 * 299.99905 * 1 2 3 32 32 H 1.08997 * 109.47483 * 240.00519 * 2 1 3 33 33 H 1.08996 * 109.47060 * 119.99220 * 2 1 3 34 34 H 1.09007 * 109.46569 * 30.00870 * 4 3 2 35 35 H 1.08996 * 109.47099 * 149.99782 * 4 3 2 36 36 H 0.97000 * 119.99850 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.46825 * 60.00356 * 15 13 3 38 38 H 1.09002 * 109.47091 * 300.00396 * 15 13 3 39 39 H 1.09002 * 109.48908 * 303.15220 * 17 16 15 40 40 H 1.09002 * 109.49369 * 63.22349 * 17 16 15 41 41 H 1.08997 * 109.48880 * 61.56749 * 18 17 16 42 42 H 1.09004 * 109.48844 * 181.62946 * 18 17 16 43 43 H 1.07996 * 120.01559 * 359.97286 * 21 20 19 44 44 H 1.07999 * 119.99146 * 180.27224 * 22 21 20 45 45 H 0.96702 * 113.99847 * 269.97377 * 24 23 22 46 46 H 1.08004 * 119.99123 * 180.02562 * 25 23 22 47 47 H 1.08001 * 120.01007 * 179.97438 * 26 25 23 48 48 H 1.09002 * 109.48908 * 180.71202 * 27 19 18 49 49 H 1.09002 * 109.49369 * 60.64073 * 27 19 18 50 50 H 1.08997 * 109.49355 * 296.78047 * 28 16 15 51 51 H 1.09003 * 109.49032 * 56.82589 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0957 7 6 4.1494 2.3906 -2.8774 8 7 5.3916 2.1843 -3.2568 9 14 3.0130 3.4361 -3.9287 10 1 3.1158 4.8562 -3.5068 11 1 3.4066 3.3138 -5.3554 12 1 1.6135 2.9695 -3.7595 13 6 2.2428 2.0167 1.1671 14 8 2.6474 3.1600 1.1672 15 6 1.9912 1.3065 2.4723 16 7 2.3089 2.2067 3.5888 17 6 1.8556 1.6406 4.8669 18 6 2.1327 2.6411 5.9917 19 7 3.5704 2.9421 6.0327 20 6 3.8731 3.7997 7.0964 21 6 4.5254 5.0017 6.8557 22 6 4.8185 5.8501 7.9053 23 6 4.4722 5.4964 9.2009 24 8 4.7666 6.3296 10.2347 25 6 3.8252 4.2936 9.4428 26 6 3.5262 3.4466 8.3938 27 6 4.0237 3.5082 4.7546 28 6 3.7467 2.5078 3.6298 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.5816 1.6877 -2.0284 35 1 2.0954 3.1411 -1.1385 36 1 5.7177 2.5748 -4.0827 37 1 2.6212 0.4189 2.5302 38 1 0.9432 1.0126 2.5298 39 1 0.7858 1.4380 4.8159 40 1 2.3928 0.7131 5.0649 41 1 1.5740 3.5587 5.8079 42 1 1.8237 2.2115 6.9447 43 1 4.7998 5.2749 5.8475 44 1 5.3219 6.7870 7.7178 45 1 5.6330 6.1704 10.6336 46 1 3.5555 4.0191 10.4520 47 1 3.0228 2.5099 8.5824 48 1 5.0935 3.7109 4.8056 49 1 3.4866 4.4358 4.5567 50 1 4.3053 1.5901 3.8136 51 1 4.0557 2.9370 2.6767 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051154212.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:50 Heat of formation + Delta-G solvation = -44.670500 kcal Electronic energy + Delta-G solvation = -30732.265434 eV Core-core repulsion = 26631.481596 eV Total energy + Delta-G solvation = -4100.783838 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.57760 -40.81485 -39.63062 -37.84621 -36.89662 -35.62298 -34.83172 -32.67774 -31.97834 -31.47563 -31.03262 -29.68429 -28.13051 -25.82748 -25.38093 -24.36356 -23.68277 -23.00091 -22.62653 -20.90244 -19.84633 -19.33705 -19.10252 -18.39470 -17.92657 -17.28446 -16.96526 -16.59233 -16.37934 -16.27925 -15.94898 -15.71211 -15.46173 -15.30985 -15.01322 -14.95568 -14.68047 -14.56558 -14.46610 -14.16353 -13.81778 -13.60896 -13.44900 -13.22651 -13.10321 -13.03629 -12.85893 -12.71548 -12.52993 -12.37260 -12.31202 -12.13875 -12.01291 -11.94439 -11.81051 -11.74331 -11.33984 -10.83701 -10.63440 -10.50847 -9.99150 -9.38699 -9.31016 -8.74373 -8.34600 -6.38949 0.25892 0.35826 1.31217 1.35350 1.43529 1.84635 2.20042 2.29931 2.50826 2.79551 2.92174 3.00000 3.37961 3.65119 3.74161 3.84013 3.98826 4.02342 4.10174 4.11811 4.18163 4.32597 4.34909 4.38218 4.41067 4.46773 4.49918 4.55176 4.66111 4.67124 4.75625 4.80650 4.85456 4.89898 4.93379 4.99862 5.02684 5.03438 5.03542 5.17798 5.23693 5.40867 5.47470 5.47665 5.64762 5.68103 5.83311 5.91428 6.08371 6.21512 6.25303 6.62117 6.76863 6.89881 7.22253 7.49611 8.82246 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015872 B = 0.002251 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.684576 B =12435.547433 C =13700.518430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.228 3.772 5 C -0.531 4.531 6 H 0.028 0.972 7 C 0.010 3.990 8 N -0.945 5.945 9 Si 0.946 3.054 10 H -0.278 1.278 11 H -0.275 1.275 12 H -0.239 1.239 13 C 0.497 3.503 14 O -0.576 6.576 15 C 0.053 3.947 16 N -0.539 5.539 17 C 0.057 3.943 18 C 0.062 3.938 19 N -0.491 5.491 20 C 0.092 3.908 21 C -0.168 4.168 22 C -0.127 4.127 23 C 0.069 3.931 24 O -0.511 6.511 25 C -0.121 4.121 26 C -0.123 4.123 27 C 0.067 3.933 28 C 0.058 3.942 29 H 0.044 0.956 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.015 0.985 36 H 0.268 0.732 37 H 0.076 0.924 38 H 0.134 0.866 39 H 0.110 0.890 40 H 0.053 0.947 41 H 0.040 0.960 42 H 0.113 0.887 43 H 0.126 0.874 44 H 0.135 0.865 45 H 0.407 0.593 46 H 0.150 0.850 47 H 0.148 0.852 48 H 0.086 0.914 49 H 0.042 0.958 50 H 0.038 0.962 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.321 -3.130 25.525 27.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.105 3.895 5 C -0.570 4.570 6 H 0.046 0.954 7 C -0.188 4.188 8 N -0.585 5.585 9 Si 0.769 3.231 10 H -0.204 1.204 11 H -0.200 1.200 12 H -0.162 1.162 13 C 0.286 3.714 14 O -0.456 6.456 15 C -0.078 4.078 16 N -0.264 5.264 17 C -0.070 4.070 18 C -0.063 4.063 19 N -0.207 5.207 20 C -0.005 4.005 21 C -0.189 4.189 22 C -0.146 4.146 23 C 0.024 3.976 24 O -0.323 6.323 25 C -0.140 4.140 26 C -0.143 4.143 27 C -0.060 4.060 28 C -0.070 4.070 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.152 0.848 39 H 0.128 0.872 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.131 0.869 43 H 0.144 0.856 44 H 0.153 0.847 45 H 0.265 0.735 46 H 0.168 0.832 47 H 0.166 0.834 48 H 0.104 0.896 49 H 0.060 0.940 50 H 0.056 0.944 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.585 -2.347 25.195 27.058 hybrid contribution 1.151 0.507 -1.117 1.682 sum -8.434 -1.840 24.078 25.578 Atomic orbital electron populations 1.22154 0.93864 1.03624 1.02136 1.21766 0.95695 0.81121 1.03807 1.48076 1.64520 1.15159 1.05734 1.19239 0.94661 0.92914 0.82682 1.21545 0.97041 1.31845 1.06554 0.95371 1.25838 0.96679 0.97236 0.99013 1.70049 1.17356 1.46649 1.24491 0.85735 0.80511 0.78987 0.77830 1.20374 1.20006 1.16207 1.21187 0.77174 0.86730 0.86309 1.90608 1.46898 1.20406 1.87685 1.21985 1.04720 0.93664 0.87411 1.61772 1.16401 1.44890 1.03371 1.22340 1.02209 0.95957 0.86468 1.22399 0.84668 0.98997 1.00234 1.59414 1.17404 1.41493 1.02369 1.19197 0.98652 0.90453 0.92201 1.21338 1.03877 0.93718 0.99924 1.21423 1.00677 1.00236 0.92309 1.18508 1.01109 0.90859 0.87165 1.84806 1.42256 1.57566 1.47720 1.21501 0.99229 0.92736 1.00497 1.20866 1.02744 1.00884 0.89805 1.22150 1.00715 0.96065 0.87085 1.22150 0.88113 0.98109 0.98621 0.93690 0.88744 0.91758 0.91180 0.88706 0.93611 0.96654 0.92334 0.90669 0.84804 0.87175 0.92868 0.94110 0.86868 0.85578 0.84744 0.73501 0.83203 0.83393 0.89584 0.93966 0.94374 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 10.24 71.98 0.74 -2.56 16 2 C 0.10 2.75 5.93 86.38 0.51 3.26 16 3 N -0.60 -23.91 2.46 -826.16 -2.03 -25.94 16 4 C 0.23 11.10 4.23 85.63 0.36 11.46 16 5 C -0.53 -31.30 9.94 25.60 0.25 -31.05 16 6 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 7 C 0.01 0.61 5.47 84.65 0.46 1.07 16 8 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 9 Si 0.95 44.94 27.47 68.60 1.88 46.83 16 10 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 13 C 0.50 19.70 7.37 87.66 0.65 20.34 16 14 O -0.58 -28.64 13.92 -3.02 -0.04 -28.69 16 15 C 0.05 1.40 4.00 85.56 0.34 1.75 16 16 N -0.54 -14.71 4.45 -900.26 -4.00 -18.71 16 17 C 0.06 1.05 5.61 86.31 0.48 1.54 16 18 C 0.06 1.15 5.38 86.31 0.46 1.61 16 19 N -0.49 -10.93 4.76 -694.59 -3.31 -14.23 16 20 C 0.09 1.97 5.64 38.14 0.22 2.18 16 21 C -0.17 -3.71 8.82 22.39 0.20 -3.52 16 22 C -0.13 -2.54 9.98 22.35 0.22 -2.31 16 23 C 0.07 1.25 6.70 22.49 0.15 1.40 16 24 O -0.51 -7.93 13.51 -93.58 -1.26 -9.20 16 25 C -0.12 -1.92 9.98 22.35 0.22 -1.70 16 26 C -0.12 -2.08 9.19 22.39 0.21 -1.88 16 27 C 0.07 1.81 4.30 86.31 0.37 2.18 16 28 C 0.06 1.81 5.26 86.31 0.45 2.26 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.19 7.22 -2.39 -0.02 1.17 16 32 H 0.07 2.15 8.07 -2.39 -0.02 2.14 16 33 H 0.09 2.09 6.44 -2.39 -0.02 2.07 16 34 H 0.05 2.07 7.13 -2.38 -0.02 2.05 16 35 H 0.02 0.81 6.85 -2.39 -0.02 0.80 16 36 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 37 H 0.08 1.80 7.38 -2.39 -0.02 1.79 16 38 H 0.13 2.60 7.07 -2.39 -0.02 2.58 16 39 H 0.11 1.46 8.07 -2.39 -0.02 1.44 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.11 1.44 6.82 -2.39 -0.02 1.42 16 43 H 0.13 2.87 5.81 -2.91 -0.02 2.86 16 44 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 45 H 0.41 2.34 9.06 -74.06 -0.67 1.67 16 46 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 47 H 0.15 1.85 7.18 -2.91 -0.02 1.83 16 48 H 0.09 2.23 7.16 -2.39 -0.02 2.22 16 49 H 0.04 1.26 7.60 -2.39 -0.02 1.24 16 50 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.07 2.66 5.85 -2.39 -0.01 2.64 16 Total: -1.00 -81.67 400.20 -1.94 -83.61 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.21 Total: 20.07 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 6.31 Total: 6.03 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -9.04 Total: -118.65 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -1.31 Total: -37.88 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.83 kcal Total: -81.67 -1.94 -83.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051154212.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.942 kcal (2) G-P(sol) polarization free energy of solvation -81.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds