Wall clock time and date at job start Wed Apr 1 2020 05:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46503 * 109.47036 * 2 1 4 4 C 1.46505 * 119.99934 * 269.99842 * 3 2 1 5 5 C 1.50702 * 109.47079 * 270.00361 * 4 3 2 6 6 H 1.07994 * 119.99882 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99589 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00303 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99812 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46964 * 59.99697 * 9 7 5 11 11 H 1.48497 * 109.46924 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46897 * 300.00317 * 9 7 5 13 13 C 1.34770 * 120.00279 * 90.00214 * 3 2 1 14 14 O 1.21280 * 120.00403 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99813 * 0.02562 * 13 3 2 16 16 N 1.46908 * 109.47007 * 180.02562 * 15 13 3 17 17 C 1.46900 * 110.99583 * 293.94896 * 16 15 13 18 18 C 1.46896 * 110.99893 * 169.99938 * 16 15 13 19 19 C 1.50692 * 109.47250 * 189.99788 * 18 16 15 20 20 O 1.21296 * 119.99842 * 359.97438 * 19 18 16 21 21 N 1.34778 * 120.00463 * 179.97438 * 19 18 16 22 22 C 1.39927 * 120.00426 * 185.27084 * 21 19 18 23 23 C 1.38878 * 120.06630 * 33.29281 * 22 21 19 24 24 C 1.38109 * 119.92977 * 179.72286 * 23 22 21 25 25 C 1.38287 * 120.06576 * 0.23040 * 24 23 22 26 26 C 1.50701 * 119.92491 * 180.02562 * 25 24 23 27 27 C 1.38279 * 120.14492 * 0.04664 * 25 24 23 28 28 C 1.38108 * 120.06816 * 359.95181 * 27 25 24 29 29 H 1.09005 * 109.47214 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47335 * 300.00260 * 1 2 3 31 31 H 1.09005 * 109.47446 * 60.00223 * 1 2 3 32 32 H 1.09003 * 109.47335 * 239.99740 * 2 1 3 33 33 H 1.09005 * 109.47446 * 119.99777 * 2 1 3 34 34 H 1.08998 * 109.46619 * 29.99901 * 4 3 2 35 35 H 1.08997 * 109.46755 * 150.00288 * 4 3 2 36 36 H 0.96996 * 119.99875 * 179.97438 * 8 7 5 37 37 H 1.08991 * 109.47150 * 59.99958 * 15 13 3 38 38 H 1.08997 * 109.47033 * 299.99479 * 15 13 3 39 39 H 1.08995 * 109.47039 * 296.04552 * 17 16 15 40 40 H 1.09003 * 109.47008 * 56.05174 * 17 16 15 41 41 H 1.09000 * 109.46774 * 176.04949 * 17 16 15 42 42 H 1.08996 * 109.47171 * 69.99355 * 18 16 15 43 43 H 1.09005 * 109.47177 * 309.99736 * 18 16 15 44 44 H 0.96996 * 119.99747 * 5.27439 * 21 19 18 45 45 H 1.07999 * 120.03716 * 0.02562 * 23 22 21 46 46 H 1.07999 * 119.96736 * 180.25359 * 24 23 22 47 47 H 1.08997 * 109.47196 * 90.00330 * 26 25 24 48 48 H 1.09001 * 109.46970 * 210.00363 * 26 25 24 49 49 H 1.09004 * 109.47548 * 329.99737 * 26 25 24 50 50 H 1.07996 * 119.96528 * 179.97438 * 27 25 24 51 51 H 1.08003 * 120.03314 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3427 1.2309 -1.0958 7 6 4.1490 2.3896 -2.8781 8 7 3.3487 3.1249 -3.6187 9 14 5.9134 2.0966 -3.4170 10 1 6.1416 0.6399 -3.5936 11 1 6.1608 2.7965 -4.7031 12 1 6.8405 2.6209 -2.3823 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1599 1.1671 15 6 1.9924 1.3060 2.4723 16 7 2.3099 2.2063 3.5888 17 6 3.7464 2.5111 3.6271 18 6 1.8577 1.6400 4.8666 19 6 1.9741 2.6834 5.9477 20 8 2.3931 3.7898 5.6801 21 7 1.6127 2.3872 7.2119 22 6 1.6158 3.3854 8.1926 23 6 1.3027 4.6951 7.8533 24 6 1.3010 5.6770 8.8245 25 6 1.6154 5.3578 10.1328 26 6 1.6120 6.4316 11.1902 27 6 1.9332 4.0557 10.4728 28 6 1.9366 3.0693 9.5062 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5816 1.6877 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 3.6747 3.5153 -4.4446 37 1 2.6229 0.4188 2.5298 38 1 0.9445 1.0115 2.5303 39 1 4.3068 1.5967 3.8220 40 1 4.0548 2.9290 2.6687 41 1 3.9436 3.2337 4.4189 42 1 2.4774 0.7807 5.1228 43 1 0.8182 1.3245 4.7766 44 1 1.3506 1.4822 7.4419 45 1 1.0559 4.9448 6.8319 46 1 1.0535 6.6950 8.5621 47 1 0.6199 6.4988 11.6366 48 1 2.3415 6.1843 11.9614 49 1 1.8723 7.3884 10.7374 50 1 2.1787 3.8098 11.4954 51 1 2.1846 2.0524 9.7724 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051231516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:07 Heat of formation + Delta-G solvation = -26.332607 kcal Electronic energy + Delta-G solvation = -30043.393469 eV Core-core repulsion = 25943.404822 eV Total energy + Delta-G solvation = -4099.988648 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.79926 -39.39844 -38.77197 -36.44679 -35.23578 -35.02881 -32.77701 -31.96202 -31.17139 -30.09843 -29.27872 -28.19058 -26.61702 -26.27678 -23.66207 -23.22752 -22.96693 -22.12726 -21.35065 -20.42959 -18.39774 -18.00293 -17.22926 -16.62915 -16.33238 -16.01512 -15.69354 -15.54833 -15.32011 -14.91726 -14.64009 -14.34069 -14.14558 -14.03732 -13.94943 -13.73151 -13.62430 -13.34101 -13.03114 -12.75744 -12.62956 -12.45691 -12.37167 -12.00688 -11.92492 -11.85142 -11.68241 -11.44044 -11.30591 -11.24044 -11.11092 -10.89594 -10.68739 -10.49857 -10.43695 -10.08772 -9.89170 -9.61531 -9.15248 -8.83398 -8.40383 -8.23608 -8.14536 -7.60596 -6.01250 -4.06000 1.01016 1.18514 2.43194 2.66118 3.32988 3.37980 3.39780 3.49229 3.56045 3.70052 4.23969 4.42693 4.47438 4.59533 4.65395 4.78689 4.92586 4.99717 5.01986 5.12082 5.15513 5.24860 5.29090 5.32731 5.33563 5.35865 5.47724 5.49563 5.63325 5.64004 5.72512 5.78993 5.80200 5.85876 6.02534 6.06543 6.10128 6.23595 6.28768 6.39650 6.48217 6.55957 6.81581 6.89120 7.01128 7.14228 7.21160 7.50235 7.60146 7.95478 7.97345 8.27095 8.47965 8.94007 9.18232 9.59021 11.06660 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018103 B = 0.001920 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.330156 B =14581.769983 C =15329.209755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.518 6.518 15 C 0.037 3.963 16 N -0.505 5.505 17 C 0.014 3.986 18 C 0.038 3.962 19 C 0.512 3.488 20 O -0.488 6.488 21 N -0.681 5.681 22 C 0.146 3.854 23 C -0.116 4.116 24 C -0.100 4.100 25 C -0.107 4.107 26 C -0.112 4.112 27 C -0.103 4.103 28 C -0.146 4.146 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.013 0.987 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.107 0.893 44 H 0.409 0.591 45 H 0.137 0.863 46 H 0.125 0.875 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.065 0.935 50 H 0.123 0.877 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.620 -6.316 27.846 29.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.394 6.394 15 C -0.094 4.094 16 N -0.229 5.229 17 C -0.133 4.133 18 C -0.093 4.093 19 C 0.299 3.701 20 O -0.359 6.359 21 N -0.327 5.327 22 C 0.052 3.948 23 C -0.136 4.136 24 C -0.118 4.118 25 C -0.108 4.108 26 C -0.168 4.168 27 C -0.122 4.122 28 C -0.166 4.166 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.115 0.885 39 H 0.031 0.969 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.125 0.875 44 H 0.244 0.756 45 H 0.155 0.845 46 H 0.143 0.857 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.141 0.859 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.347 -4.352 27.265 28.571 hybrid contribution 1.223 -1.628 -0.187 2.045 sum -6.124 -5.980 27.078 28.398 Atomic orbital electron populations 1.22230 0.96844 1.01287 1.02410 1.21397 0.93475 0.84395 1.02498 1.48254 1.64269 1.13134 1.07649 1.19242 0.96111 0.93703 0.78045 1.21392 0.96974 1.31930 1.06184 0.92634 1.24933 0.97764 0.94967 0.96438 1.69922 1.35667 1.33393 1.14330 0.86577 0.84941 0.78151 0.77840 1.20332 1.21192 1.20204 1.20015 0.79098 0.87125 0.84604 1.90669 1.44432 1.17621 1.86629 1.22125 1.02218 0.94123 0.90941 1.61318 1.19145 1.42829 0.99643 1.22746 0.84899 0.99550 1.06151 1.21969 1.03089 0.94423 0.89867 1.20812 0.76873 0.89976 0.82479 1.90751 1.41345 1.22954 1.80862 1.43590 1.68266 1.12343 1.08543 1.17730 0.99403 0.89334 0.88306 1.21224 0.99871 0.91716 1.00812 1.20963 0.99493 0.99330 0.92049 1.19913 1.01043 0.94917 0.94895 1.20757 1.02131 0.96948 0.97013 1.20783 1.00315 0.92155 0.98904 1.20850 1.03593 1.00120 0.92042 0.92269 0.93087 0.91968 0.89984 0.92037 0.95090 0.93857 0.92693 0.92382 0.88533 0.96858 0.88490 0.89980 0.91768 0.87519 0.75577 0.84508 0.85730 0.91348 0.91709 0.91565 0.85868 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.15 0.38 -1.79 16 2 C 0.11 1.65 5.93 -4.04 -0.02 1.62 16 3 N -0.60 -12.53 2.46 -175.06 -0.43 -12.96 16 4 C 0.25 6.51 5.16 -5.19 -0.03 6.48 16 5 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 9 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.51 10.56 7.37 -10.99 -0.08 10.48 16 14 O -0.52 -13.35 13.91 5.56 0.08 -13.27 16 15 C 0.04 0.54 4.00 -4.97 -0.02 0.52 16 16 N -0.51 -7.76 4.24 -245.83 -1.04 -8.81 16 17 C 0.01 0.23 8.85 60.06 0.53 0.76 16 18 C 0.04 0.39 5.45 -4.98 -0.03 0.36 16 19 C 0.51 6.11 7.29 -10.99 -0.08 6.03 16 20 O -0.49 -8.05 12.00 5.54 0.07 -7.99 16 21 N -0.68 -5.98 5.34 -9.86 -0.05 -6.03 16 22 C 0.15 1.51 6.28 -83.69 -0.53 0.98 16 23 C -0.12 -1.37 8.66 -39.39 -0.34 -1.71 16 24 C -0.10 -1.01 9.69 -39.61 -0.38 -1.39 16 25 C -0.11 -0.93 5.88 -104.59 -0.62 -1.55 16 26 C -0.11 -0.69 10.01 36.01 0.36 -0.33 16 27 C -0.10 -0.83 9.69 -39.61 -0.38 -1.21 16 28 C -0.15 -1.22 9.96 -39.40 -0.39 -1.61 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.61 7.22 -51.93 -0.38 0.24 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 37 H 0.06 0.75 7.38 -51.93 -0.38 0.36 16 38 H 0.10 1.16 6.98 -51.93 -0.36 0.79 16 39 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.10 2.00 5.82 -51.93 -0.30 1.69 16 41 H 0.08 1.42 5.88 -51.93 -0.31 1.12 16 42 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 43 H 0.11 0.81 7.93 -51.93 -0.41 0.40 16 44 H 0.41 2.01 8.82 -40.82 -0.36 1.65 16 45 H 0.14 1.87 6.42 -52.49 -0.34 1.54 16 46 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 49 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 50 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 51 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 LS Contribution 415.00 15.07 6.25 6.25 Total: -1.00 -37.02 415.00 -9.62 -46.64 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -8.16 Total: 1.16 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -2.05 Total: 4.04 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.79 Total: -53.87 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: 0.14 Total: -21.26 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -37.02 -9.62 -46.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051231516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.307 kcal (2) G-P(sol) polarization free energy of solvation -37.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds