Wall clock time and date at job start Wed Apr 1 2020 05:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46503 * 109.47036 * 2 1 4 4 C 1.46505 * 119.99934 * 269.99842 * 3 2 1 5 5 C 1.50702 * 109.47079 * 270.00361 * 4 3 2 6 6 H 1.07994 * 119.99882 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99589 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00303 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99812 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46964 * 59.99697 * 9 7 5 11 11 H 1.48497 * 109.46924 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46897 * 300.00317 * 9 7 5 13 13 C 1.34770 * 120.00279 * 90.00214 * 3 2 1 14 14 O 1.21280 * 120.00403 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99813 * 0.02562 * 13 3 2 16 16 N 1.46908 * 109.47007 * 180.02562 * 15 13 3 17 17 C 1.46900 * 110.99583 * 293.94896 * 16 15 13 18 18 C 1.46896 * 110.99893 * 169.99938 * 16 15 13 19 19 C 1.50692 * 109.47250 * 189.99788 * 18 16 15 20 20 O 1.21296 * 119.99842 * 359.97438 * 19 18 16 21 21 N 1.34778 * 120.00463 * 179.97438 * 19 18 16 22 22 C 1.39927 * 120.00426 * 185.27084 * 21 19 18 23 23 C 1.38878 * 120.06630 * 33.29281 * 22 21 19 24 24 C 1.38109 * 119.92977 * 179.72286 * 23 22 21 25 25 C 1.38287 * 120.06576 * 0.23040 * 24 23 22 26 26 C 1.50701 * 119.92491 * 180.02562 * 25 24 23 27 27 C 1.38279 * 120.14492 * 0.04664 * 25 24 23 28 28 C 1.38108 * 120.06816 * 359.95181 * 27 25 24 29 29 H 1.09005 * 109.47214 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47335 * 300.00260 * 1 2 3 31 31 H 1.09005 * 109.47446 * 60.00223 * 1 2 3 32 32 H 1.09003 * 109.47335 * 239.99740 * 2 1 3 33 33 H 1.09005 * 109.47446 * 119.99777 * 2 1 3 34 34 H 1.08998 * 109.46619 * 29.99901 * 4 3 2 35 35 H 1.08997 * 109.46755 * 150.00288 * 4 3 2 36 36 H 0.96996 * 119.99875 * 179.97438 * 8 7 5 37 37 H 1.08991 * 109.47150 * 59.99958 * 15 13 3 38 38 H 1.08997 * 109.47033 * 299.99479 * 15 13 3 39 39 H 1.08995 * 109.47039 * 296.04552 * 17 16 15 40 40 H 1.09003 * 109.47008 * 56.05174 * 17 16 15 41 41 H 1.09000 * 109.46774 * 176.04949 * 17 16 15 42 42 H 1.08996 * 109.47171 * 69.99355 * 18 16 15 43 43 H 1.09005 * 109.47177 * 309.99736 * 18 16 15 44 44 H 0.96996 * 119.99747 * 5.27439 * 21 19 18 45 45 H 1.07999 * 120.03716 * 0.02562 * 23 22 21 46 46 H 1.07999 * 119.96736 * 180.25359 * 24 23 22 47 47 H 1.08997 * 109.47196 * 90.00330 * 26 25 24 48 48 H 1.09001 * 109.46970 * 210.00363 * 26 25 24 49 49 H 1.09004 * 109.47548 * 329.99737 * 26 25 24 50 50 H 1.07996 * 119.96528 * 179.97438 * 27 25 24 51 51 H 1.08003 * 120.03314 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3427 1.2309 -1.0958 7 6 4.1490 2.3896 -2.8781 8 7 3.3487 3.1249 -3.6187 9 14 5.9134 2.0966 -3.4170 10 1 6.1416 0.6399 -3.5936 11 1 6.1608 2.7965 -4.7031 12 1 6.8405 2.6209 -2.3823 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1599 1.1671 15 6 1.9924 1.3060 2.4723 16 7 2.3099 2.2063 3.5888 17 6 3.7464 2.5111 3.6271 18 6 1.8577 1.6400 4.8666 19 6 1.9741 2.6834 5.9477 20 8 2.3931 3.7898 5.6801 21 7 1.6127 2.3872 7.2119 22 6 1.6158 3.3854 8.1926 23 6 1.3027 4.6951 7.8533 24 6 1.3010 5.6770 8.8245 25 6 1.6154 5.3578 10.1328 26 6 1.6120 6.4316 11.1902 27 6 1.9332 4.0557 10.4728 28 6 1.9366 3.0693 9.5062 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5816 1.6877 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 3.6747 3.5153 -4.4446 37 1 2.6229 0.4188 2.5298 38 1 0.9445 1.0115 2.5303 39 1 4.3068 1.5967 3.8220 40 1 4.0548 2.9290 2.6687 41 1 3.9436 3.2337 4.4189 42 1 2.4774 0.7807 5.1228 43 1 0.8182 1.3245 4.7766 44 1 1.3506 1.4822 7.4419 45 1 1.0559 4.9448 6.8319 46 1 1.0535 6.6950 8.5621 47 1 0.6199 6.4988 11.6366 48 1 2.3415 6.1843 11.9614 49 1 1.8723 7.3884 10.7374 50 1 2.1787 3.8098 11.4954 51 1 2.1846 2.0524 9.7724 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051231516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:06 Heat of formation + Delta-G solvation = -52.844399 kcal Electronic energy + Delta-G solvation = -30044.543107 eV Core-core repulsion = 25943.404822 eV Total energy + Delta-G solvation = -4101.138285 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.64552 -40.79963 -39.69657 -37.63678 -36.71104 -36.00676 -34.89331 -32.65899 -31.86908 -31.61976 -30.45307 -29.38303 -28.31211 -27.05759 -25.25384 -24.32287 -23.98839 -23.42924 -22.22161 -21.26050 -19.86765 -18.84938 -18.59776 -18.15934 -17.89893 -17.13237 -16.91298 -16.60712 -16.33490 -16.23985 -15.84728 -15.55174 -15.44916 -15.08656 -14.75935 -14.60662 -14.57962 -14.40428 -14.33129 -14.20313 -13.77837 -13.53559 -13.34903 -13.25935 -13.12419 -12.96925 -12.88592 -12.66338 -12.61907 -12.56053 -12.50780 -12.40213 -12.11741 -12.00602 -11.79839 -11.70853 -11.23485 -10.87703 -10.64239 -10.41262 -9.86680 -9.38059 -9.26058 -8.93072 -8.21654 -6.36706 0.28962 0.46957 1.34506 1.39659 1.46550 1.60695 1.85404 1.92229 2.31448 2.44864 2.85584 3.04382 3.07393 3.66861 3.73588 3.96679 4.03782 4.12334 4.13798 4.16252 4.29756 4.36094 4.37426 4.44157 4.48377 4.50643 4.54829 4.60760 4.65851 4.71172 4.86267 4.87532 4.97499 5.03410 5.08898 5.09135 5.15951 5.20283 5.24562 5.37275 5.41458 5.44253 5.58104 5.59921 5.71759 5.83522 5.91533 5.95971 6.08276 6.12297 6.50005 6.71998 6.88206 7.20586 7.29949 7.59905 8.84904 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018103 B = 0.001920 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.330156 B =14581.769983 C =15329.209755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.257 1.257 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.492 3.508 14 O -0.583 6.583 15 C 0.055 3.945 16 N -0.538 5.538 17 C 0.027 3.973 18 C 0.043 3.957 19 C 0.507 3.493 20 O -0.546 6.546 21 N -0.661 5.661 22 C 0.128 3.872 23 C -0.144 4.144 24 C -0.118 4.118 25 C -0.111 4.111 26 C -0.111 4.111 27 C -0.104 4.104 28 C -0.139 4.139 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.021 0.979 35 H -0.010 1.010 36 H 0.266 0.734 37 H 0.092 0.908 38 H 0.136 0.864 39 H 0.039 0.961 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.143 0.857 44 H 0.430 0.570 45 H 0.105 0.895 46 H 0.126 0.874 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.064 0.936 50 H 0.153 0.847 51 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.664 -10.320 31.056 33.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.142 3.858 5 C -0.579 4.579 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.182 1.182 11 H -0.204 1.204 12 H -0.206 1.206 13 C 0.280 3.720 14 O -0.463 6.463 15 C -0.076 4.076 16 N -0.262 5.262 17 C -0.120 4.120 18 C -0.087 4.087 19 C 0.296 3.704 20 O -0.422 6.422 21 N -0.309 5.309 22 C 0.034 3.966 23 C -0.164 4.164 24 C -0.136 4.136 25 C -0.112 4.112 26 C -0.167 4.167 27 C -0.123 4.123 28 C -0.159 4.159 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.039 0.961 35 H 0.009 0.991 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.154 0.846 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.122 0.878 43 H 0.161 0.839 44 H 0.269 0.731 45 H 0.123 0.877 46 H 0.143 0.857 47 H 0.098 0.902 48 H 0.098 0.902 49 H 0.083 0.917 50 H 0.171 0.829 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.442 -8.457 30.525 32.537 hybrid contribution 1.173 -0.341 -1.097 1.642 sum -6.268 -8.798 29.428 31.349 Atomic orbital electron populations 1.22165 0.94578 1.03521 1.01671 1.21771 0.95309 0.81183 1.04022 1.48286 1.64330 1.15176 1.05975 1.18635 0.95169 0.91320 0.80637 1.21689 0.97928 1.31921 1.06368 0.92799 1.25891 1.02408 0.94561 0.96550 1.70055 1.37806 1.34260 1.14781 0.85478 0.79004 0.79119 0.77258 1.18156 1.20430 1.20563 1.21278 0.77478 0.86712 0.86510 1.90649 1.47119 1.20767 1.87723 1.22048 1.05118 0.93586 0.86799 1.61079 1.18081 1.44915 1.02174 1.22428 0.86766 1.00128 1.02720 1.22117 1.05723 0.94335 0.86555 1.21275 0.75985 0.89565 0.83624 1.90750 1.44205 1.25364 1.81848 1.43368 1.67055 1.13084 1.07367 1.17902 1.00178 0.89021 0.89519 1.21146 1.02023 0.93472 0.99758 1.21101 1.00380 0.99262 0.92879 1.20252 1.00056 0.96267 0.94617 1.20805 1.03264 0.96062 0.96594 1.21211 0.99110 0.91628 1.00318 1.21192 1.02086 1.01745 0.90869 0.88420 0.91825 0.94785 0.91236 0.87696 0.96126 0.99146 0.92496 0.89039 0.84585 0.94258 0.93398 0.91434 0.87766 0.83888 0.73079 0.87666 0.85652 0.90210 0.90188 0.91695 0.82896 0.82731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 10.24 71.98 0.74 -2.96 16 2 C 0.10 2.85 5.93 86.38 0.51 3.36 16 3 N -0.61 -25.64 2.46 -826.14 -2.03 -27.67 16 4 C 0.26 14.65 5.16 85.63 0.44 15.09 16 5 C -0.54 -31.85 9.39 25.60 0.24 -31.61 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.00 0.28 5.46 84.65 0.46 0.74 16 8 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 9 Si 0.97 46.00 29.54 68.60 2.03 48.02 16 10 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 13 C 0.49 20.80 7.37 87.66 0.65 21.44 16 14 O -0.58 -32.05 13.91 -3.03 -0.04 -32.09 16 15 C 0.05 1.45 4.00 85.56 0.34 1.79 16 16 N -0.54 -15.75 4.24 -931.66 -3.95 -19.70 16 17 C 0.03 0.93 8.85 127.69 1.13 2.06 16 18 C 0.04 0.73 5.45 85.56 0.47 1.19 16 19 C 0.51 11.58 7.29 87.65 0.64 12.22 16 20 O -0.55 -18.92 12.00 -3.08 -0.04 -18.96 16 21 N -0.66 -10.29 5.34 -303.50 -1.62 -11.91 16 22 C 0.13 2.53 6.28 38.15 0.24 2.77 16 23 C -0.14 -3.60 8.66 22.39 0.19 -3.41 16 24 C -0.12 -2.50 9.69 22.25 0.22 -2.28 16 25 C -0.11 -1.81 5.88 -19.84 -0.12 -1.93 16 26 C -0.11 -1.18 10.01 71.24 0.71 -0.47 16 27 C -0.10 -1.41 9.69 22.25 0.22 -1.19 16 28 C -0.14 -1.95 9.96 22.39 0.22 -1.73 16 29 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.06 1.30 7.22 -2.39 -0.02 1.29 16 31 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 33 H 0.10 2.12 6.44 -2.38 -0.02 2.10 16 34 H 0.02 1.16 8.07 -2.39 -0.02 1.15 16 35 H -0.01 -0.63 7.42 -2.39 -0.02 -0.64 16 36 H 0.27 15.58 8.31 -92.71 -0.77 14.80 16 37 H 0.09 1.87 7.38 -2.39 -0.02 1.85 16 38 H 0.14 2.55 6.98 -2.39 -0.02 2.53 16 39 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.05 2.09 5.82 -2.39 -0.01 2.08 16 41 H 0.07 2.46 5.88 -2.39 -0.01 2.45 16 42 H 0.10 1.03 8.12 -2.39 -0.02 1.01 16 43 H 0.14 1.41 7.93 -2.38 -0.02 1.39 16 44 H 0.43 2.66 8.82 -92.71 -0.82 1.84 16 45 H 0.11 3.25 6.42 -2.91 -0.02 3.23 16 46 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 47 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 49 H 0.06 0.71 8.08 -2.38 -0.02 0.69 16 50 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 51 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -91.88 415.00 2.05 -89.83 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.12 Total: 14.94 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 7.30 Total: 15.10 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -7.31 Total: -116.84 kcal Atomic # 8 Polarization: -50.97 SS G_CDS: -0.08 Total: -51.05 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -91.88 2.05 -89.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051231516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.982 kcal (2) G-P(sol) polarization free energy of solvation -91.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds