Wall clock time and date at job start Wed Apr 1 2020 05:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46494 * 109.47423 * 2 1 4 4 C 1.36936 * 120.00083 * 274.74768 * 3 2 1 5 5 H 1.08006 * 120.00406 * 18.09158 * 4 3 2 6 6 C 1.38816 * 120.00279 * 198.09136 * 4 3 2 7 7 N 1.31622 * 119.99531 * 4.20276 * 6 4 3 8 8 Si 1.86794 * 120.00181 * 184.20068 * 6 4 3 9 9 H 1.48494 * 109.47370 * 60.00208 * 8 6 4 10 10 H 1.48504 * 109.47313 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47225 * 300.00175 * 8 6 4 12 12 C 1.46496 * 120.00122 * 94.74343 * 3 2 1 13 13 C 1.50698 * 109.47338 * 90.00233 * 12 3 2 14 14 O 1.21284 * 119.99700 * 0.02562 * 13 12 3 15 15 N 1.34782 * 120.00418 * 180.02562 * 13 12 3 16 16 C 1.39947 * 119.99794 * 184.41771 * 15 13 12 17 17 C 1.38996 * 120.00497 * 324.28004 * 16 15 13 18 18 C 1.38209 * 120.22393 * 180.02562 * 17 16 15 19 19 C 1.38021 * 120.22622 * 359.97347 * 18 17 16 20 20 C 1.39574 * 119.99259 * 0.02562 * 19 18 17 21 21 C 1.47862 * 120.10854 * 180.02562 * 20 19 18 22 22 O 1.21544 * 119.99929 * 320.22747 * 21 20 19 23 23 N 1.34785 * 119.99867 * 140.22926 * 21 20 19 24 24 C 1.46501 * 119.99726 * 186.16087 * 23 21 20 25 25 C 1.53005 * 109.46810 * 90.00497 * 24 23 21 26 26 C 1.46500 * 120.00032 * 6.16877 * 23 21 20 27 27 C 1.53000 * 109.47318 * 97.73742 * 26 23 21 28 28 C 1.38594 * 119.99772 * 144.30429 * 16 15 13 29 29 H 1.08999 * 109.47450 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47401 * 300.00405 * 1 2 3 31 31 H 1.09005 * 109.47452 * 59.99822 * 1 2 3 32 32 H 1.08998 * 109.47009 * 239.99957 * 2 1 3 33 33 H 1.08997 * 109.47188 * 120.00052 * 2 1 3 34 34 H 0.97004 * 119.99585 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47207 * 329.99917 * 12 3 2 36 36 H 1.09007 * 109.47395 * 210.00383 * 12 3 2 37 37 H 0.97000 * 119.99545 * 4.41247 * 15 13 12 38 38 H 1.08001 * 119.87989 * 0.02562 * 17 16 15 39 39 H 1.07998 * 119.88455 * 180.02562 * 18 17 16 40 40 H 1.07995 * 119.99920 * 179.97438 * 19 18 17 41 41 H 1.08994 * 109.46922 * 210.00196 * 24 23 21 42 42 H 1.09001 * 109.47221 * 330.00782 * 24 23 21 43 43 H 1.09007 * 109.46852 * 299.99610 * 25 24 23 44 44 H 1.08994 * 109.47075 * 59.99446 * 25 24 23 45 45 H 1.09001 * 109.47006 * 180.02562 * 25 24 23 46 46 H 1.09005 * 109.46700 * 217.73971 * 26 23 21 47 47 H 1.08996 * 109.47101 * 337.73490 * 26 23 21 48 48 H 1.09001 * 109.46918 * 310.60747 * 27 26 23 49 49 H 1.08992 * 109.46876 * 70.60640 * 27 26 23 50 50 H 1.09001 * 109.46807 * 190.60842 * 27 26 23 51 51 H 1.08004 * 120.11201 * 359.70075 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1540 2.0594 -1.1818 5 1 1.6433 1.7098 -2.0669 6 6 2.9481 3.1964 -1.2424 7 7 3.6360 3.5756 -0.1862 8 14 3.0404 4.1881 -2.8226 9 1 1.6848 4.6780 -3.1796 10 1 3.9502 5.3456 -2.6283 11 1 3.5602 3.3289 -3.9167 12 6 2.3614 2.0368 1.2643 13 6 3.8140 1.7896 1.5804 14 8 4.4957 1.1310 0.8237 15 7 4.3557 2.3004 2.7039 16 6 5.7248 2.1498 2.9517 17 6 6.3760 0.9826 2.5699 18 6 7.7279 0.8289 2.8129 19 6 8.4405 1.8335 3.4357 20 6 7.7959 3.0093 3.8229 21 6 8.5570 4.0874 4.4898 22 8 9.4049 3.8113 5.3158 23 7 8.3105 5.3762 4.1819 24 6 9.1535 6.4367 4.7395 25 6 10.3286 6.7029 3.7965 26 6 7.1995 5.7166 3.2897 27 6 5.9832 6.1256 4.1228 28 6 6.4313 3.1642 3.5782 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.1912 4.3700 -0.2287 35 1 1.7415 1.6312 2.0639 36 1 2.1860 3.1091 1.1770 37 1 3.7965 2.7724 3.3407 38 1 5.8236 0.1933 2.0818 39 1 8.2284 -0.0801 2.5135 40 1 9.4967 1.7093 3.6241 41 1 8.5649 7.3470 4.8525 42 1 9.5322 6.1256 5.7132 43 1 10.9173 5.7924 3.6836 44 1 9.9500 7.0138 2.8229 45 1 10.9561 7.4916 4.2117 46 1 7.4926 6.5444 2.6439 47 1 6.9464 4.8507 2.6780 48 1 5.8049 5.3787 4.8965 49 1 6.1704 7.0932 4.5882 50 1 5.1077 6.1961 3.4773 51 1 5.9281 4.0737 3.8716 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068958642.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:48 Heat of formation + Delta-G solvation = 2.926282 kcal Electronic energy + Delta-G solvation = -31815.703450 eV Core-core repulsion = 27716.983563 eV Total energy + Delta-G solvation = -4098.719887 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.54758 -39.22654 -37.53132 -36.32149 -35.56853 -33.67923 -32.76144 -31.93299 -30.56724 -29.83408 -29.49720 -28.77751 -26.55481 -24.46828 -23.72639 -23.64987 -22.50371 -22.00367 -20.71042 -19.80608 -18.84941 -17.44729 -17.13020 -16.69084 -16.16238 -15.90383 -15.67579 -15.21787 -15.02324 -14.51996 -14.28729 -14.02632 -13.88002 -13.65576 -13.60703 -13.10833 -13.04114 -12.81562 -12.76120 -12.69116 -12.50894 -12.29058 -12.11367 -11.86894 -11.73942 -11.55355 -11.34549 -11.18762 -11.13321 -10.97696 -10.93593 -10.88038 -10.53028 -10.29427 -9.98009 -9.89640 -9.82630 -9.56930 -8.90797 -8.78036 -8.61747 -8.32847 -7.54058 -6.91545 -5.87555 -3.25321 1.25955 1.67858 2.82596 2.98795 3.34763 3.39641 3.41227 3.85080 3.97718 4.31066 4.49558 4.51584 4.81005 4.97172 5.00184 5.12046 5.24115 5.24688 5.32577 5.35718 5.37950 5.42313 5.50353 5.62463 5.68824 5.75311 5.77988 5.84288 5.85591 5.92984 6.00122 6.07954 6.12004 6.20935 6.24878 6.27694 6.45185 6.52865 6.56709 6.59241 6.75435 6.78137 6.79064 6.97975 7.05399 7.18346 7.32801 7.57264 7.66804 8.17244 8.21205 8.40494 9.11239 9.52998 9.76084 10.18841 11.21402 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.003266 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.991058 B = 8571.431157 C = 9727.190835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.144 3.856 3 N -0.576 5.576 4 C -0.237 4.237 5 H 0.074 0.926 6 C 0.001 3.999 7 N -0.916 5.916 8 Si 0.916 3.084 9 H -0.285 1.285 10 H -0.291 1.291 11 H -0.285 1.285 12 C 0.171 3.829 13 C 0.532 3.468 14 O -0.517 6.517 15 N -0.691 5.691 16 C 0.177 3.823 17 C -0.102 4.102 18 C -0.109 4.109 19 C -0.100 4.100 20 C -0.120 4.120 21 C 0.567 3.433 22 O -0.542 6.542 23 N -0.608 5.608 24 C 0.111 3.889 25 C -0.168 4.168 26 C 0.085 3.915 27 C -0.176 4.176 28 C -0.148 4.148 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.037 0.963 34 H 0.254 0.746 35 H 0.031 0.969 36 H 0.115 0.885 37 H 0.398 0.602 38 H 0.141 0.859 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.105 0.895 48 H 0.063 0.937 49 H 0.058 0.942 50 H 0.077 0.923 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.084 4.019 10.374 11.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.018 3.982 3 N -0.296 5.296 4 C -0.366 4.366 5 H 0.092 0.908 6 C -0.195 4.195 7 N -0.563 5.563 8 Si 0.746 3.254 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.212 1.212 12 C 0.040 3.960 13 C 0.321 3.679 14 O -0.389 6.389 15 N -0.337 5.337 16 C 0.080 3.920 17 C -0.123 4.123 18 C -0.128 4.128 19 C -0.120 4.120 20 C -0.123 4.123 21 C 0.356 3.644 22 O -0.420 6.420 23 N -0.341 5.341 24 C -0.012 4.012 25 C -0.226 4.226 26 C -0.037 4.037 27 C -0.234 4.234 28 C -0.169 4.169 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.133 0.867 37 H 0.232 0.768 38 H 0.158 0.842 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.123 0.877 48 H 0.082 0.918 49 H 0.077 0.923 50 H 0.096 0.904 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.999 3.543 10.123 11.833 hybrid contribution 0.064 1.068 -0.734 1.298 sum 5.064 4.611 9.388 11.621 Atomic orbital electron populations 1.22315 0.99524 0.99198 1.01449 1.20758 0.91819 0.86377 0.99268 1.43762 1.74175 1.09055 1.02604 1.19241 1.22598 1.06054 0.88682 0.90790 1.24813 0.97198 0.99866 0.97647 1.69509 1.32199 1.26395 1.28230 0.86146 0.77186 0.79230 0.82803 1.21211 1.21727 1.21171 1.20665 0.87731 1.00961 0.86633 1.22447 0.92782 0.75604 0.77081 1.90494 1.62679 1.39243 1.46501 1.44153 1.05540 1.59597 1.24376 1.17769 0.85647 0.92419 0.96127 1.21533 0.94834 0.97113 0.98816 1.20958 0.94073 0.98853 0.98927 1.20926 0.99838 0.92355 0.98878 1.19463 0.93848 0.95423 1.03615 1.18504 0.82189 0.82386 0.81282 1.90731 1.34816 1.83127 1.33339 1.47938 1.31735 1.05818 1.48605 1.21392 0.91901 0.89992 0.97899 1.22137 0.98387 1.02074 1.00016 1.22077 0.85918 1.03218 0.92536 1.22301 0.98431 1.01633 1.01006 1.21684 0.93256 0.98712 1.03236 0.94252 0.93712 0.92958 0.93704 0.94486 0.93480 0.95086 0.86747 0.76848 0.84156 0.85730 0.85992 0.90617 0.89822 0.92289 0.92468 0.91667 0.90615 0.87680 0.91843 0.92287 0.90421 0.83964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 10.21 37.15 0.38 -2.41 16 2 C 0.14 2.90 6.39 -4.05 -0.03 2.87 16 3 N -0.58 -13.50 2.03 -174.62 -0.35 -13.85 16 4 C -0.24 -6.14 9.74 -15.06 -0.15 -6.29 16 5 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 6 C 0.00 0.01 5.28 -17.43 -0.09 -0.08 16 7 N -0.92 -23.78 8.18 55.49 0.45 -23.33 16 8 Si 0.92 21.29 29.56 -169.99 -5.02 16.26 16 9 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.17 3.63 5.40 -5.20 -0.03 3.60 16 13 C 0.53 11.47 5.56 -10.98 -0.06 11.41 16 14 O -0.52 -13.22 13.57 5.55 0.08 -13.15 16 15 N -0.69 -12.02 5.33 -9.89 -0.05 -12.07 16 16 C 0.18 3.08 6.28 -83.74 -0.53 2.55 16 17 C -0.10 -1.83 8.69 -39.31 -0.34 -2.17 16 18 C -0.11 -1.71 10.02 -39.67 -0.40 -2.11 16 19 C -0.10 -1.56 9.63 -39.16 -0.38 -1.93 16 20 C -0.12 -1.88 5.29 -104.99 -0.56 -2.44 16 21 C 0.57 8.77 7.34 -12.32 -0.09 8.68 16 22 O -0.54 -9.74 16.47 5.33 0.09 -9.66 16 23 N -0.61 -7.66 2.48 -174.79 -0.43 -8.09 16 24 C 0.11 1.15 6.19 -4.04 -0.02 1.13 16 25 C -0.17 -1.63 10.24 37.16 0.38 -1.25 16 26 C 0.09 0.98 5.59 -4.04 -0.02 0.96 16 27 C -0.18 -1.73 8.92 37.16 0.33 -1.40 16 28 C -0.15 -2.26 7.29 -38.98 -0.28 -2.54 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.04 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.04 0.71 8.04 -51.93 -0.42 0.29 16 34 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 35 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 36 H 0.11 2.60 6.32 -51.92 -0.33 2.28 16 37 H 0.40 5.58 8.82 -40.82 -0.36 5.22 16 38 H 0.14 2.76 6.27 -52.49 -0.33 2.44 16 39 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 42 H 0.08 0.95 7.35 -51.93 -0.38 0.57 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.78 8.13 -51.93 -0.42 0.36 16 47 H 0.11 1.45 4.73 -51.93 -0.25 1.21 16 48 H 0.06 0.65 6.80 -51.93 -0.35 0.30 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.14 1.89 3.27 -52.48 -0.17 1.72 16 LS Contribution 408.34 15.07 6.15 6.15 Total: -1.00 -31.67 408.34 -9.02 -40.69 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -8.04 Total: 8.44 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -1.88 Total: 8.59 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.39 Total: -57.34 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: 0.16 Total: -22.80 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.67 -9.02 -40.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068958642.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.617 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds