Wall clock time and date at job start Wed Apr 1 2020 05:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46494 * 109.47423 * 2 1 4 4 C 1.36936 * 120.00083 * 274.74768 * 3 2 1 5 5 H 1.08006 * 120.00406 * 18.09158 * 4 3 2 6 6 C 1.38816 * 120.00279 * 198.09136 * 4 3 2 7 7 N 1.31622 * 119.99531 * 4.20276 * 6 4 3 8 8 Si 1.86794 * 120.00181 * 184.20068 * 6 4 3 9 9 H 1.48494 * 109.47370 * 60.00208 * 8 6 4 10 10 H 1.48504 * 109.47313 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47225 * 300.00175 * 8 6 4 12 12 C 1.46496 * 120.00122 * 94.74343 * 3 2 1 13 13 C 1.50698 * 109.47338 * 90.00233 * 12 3 2 14 14 O 1.21284 * 119.99700 * 0.02562 * 13 12 3 15 15 N 1.34782 * 120.00418 * 180.02562 * 13 12 3 16 16 C 1.39947 * 119.99794 * 184.41771 * 15 13 12 17 17 C 1.38996 * 120.00497 * 324.28004 * 16 15 13 18 18 C 1.38209 * 120.22393 * 180.02562 * 17 16 15 19 19 C 1.38021 * 120.22622 * 359.97347 * 18 17 16 20 20 C 1.39574 * 119.99259 * 0.02562 * 19 18 17 21 21 C 1.47862 * 120.10854 * 180.02562 * 20 19 18 22 22 O 1.21544 * 119.99929 * 320.22747 * 21 20 19 23 23 N 1.34785 * 119.99867 * 140.22926 * 21 20 19 24 24 C 1.46501 * 119.99726 * 186.16087 * 23 21 20 25 25 C 1.53005 * 109.46810 * 90.00497 * 24 23 21 26 26 C 1.46500 * 120.00032 * 6.16877 * 23 21 20 27 27 C 1.53000 * 109.47318 * 97.73742 * 26 23 21 28 28 C 1.38594 * 119.99772 * 144.30429 * 16 15 13 29 29 H 1.08999 * 109.47450 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47401 * 300.00405 * 1 2 3 31 31 H 1.09005 * 109.47452 * 59.99822 * 1 2 3 32 32 H 1.08998 * 109.47009 * 239.99957 * 2 1 3 33 33 H 1.08997 * 109.47188 * 120.00052 * 2 1 3 34 34 H 0.97004 * 119.99585 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47207 * 329.99917 * 12 3 2 36 36 H 1.09007 * 109.47395 * 210.00383 * 12 3 2 37 37 H 0.97000 * 119.99545 * 4.41247 * 15 13 12 38 38 H 1.08001 * 119.87989 * 0.02562 * 17 16 15 39 39 H 1.07998 * 119.88455 * 180.02562 * 18 17 16 40 40 H 1.07995 * 119.99920 * 179.97438 * 19 18 17 41 41 H 1.08994 * 109.46922 * 210.00196 * 24 23 21 42 42 H 1.09001 * 109.47221 * 330.00782 * 24 23 21 43 43 H 1.09007 * 109.46852 * 299.99610 * 25 24 23 44 44 H 1.08994 * 109.47075 * 59.99446 * 25 24 23 45 45 H 1.09001 * 109.47006 * 180.02562 * 25 24 23 46 46 H 1.09005 * 109.46700 * 217.73971 * 26 23 21 47 47 H 1.08996 * 109.47101 * 337.73490 * 26 23 21 48 48 H 1.09001 * 109.46918 * 310.60747 * 27 26 23 49 49 H 1.08992 * 109.46876 * 70.60640 * 27 26 23 50 50 H 1.09001 * 109.46807 * 190.60842 * 27 26 23 51 51 H 1.08004 * 120.11201 * 359.70075 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1540 2.0594 -1.1818 5 1 1.6433 1.7098 -2.0669 6 6 2.9481 3.1964 -1.2424 7 7 3.6360 3.5756 -0.1862 8 14 3.0404 4.1881 -2.8226 9 1 1.6848 4.6780 -3.1796 10 1 3.9502 5.3456 -2.6283 11 1 3.5602 3.3289 -3.9167 12 6 2.3614 2.0368 1.2643 13 6 3.8140 1.7896 1.5804 14 8 4.4957 1.1310 0.8237 15 7 4.3557 2.3004 2.7039 16 6 5.7248 2.1498 2.9517 17 6 6.3760 0.9826 2.5699 18 6 7.7279 0.8289 2.8129 19 6 8.4405 1.8335 3.4357 20 6 7.7959 3.0093 3.8229 21 6 8.5570 4.0874 4.4898 22 8 9.4049 3.8113 5.3158 23 7 8.3105 5.3762 4.1819 24 6 9.1535 6.4367 4.7395 25 6 10.3286 6.7029 3.7965 26 6 7.1995 5.7166 3.2897 27 6 5.9832 6.1256 4.1228 28 6 6.4313 3.1642 3.5782 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.1912 4.3700 -0.2287 35 1 1.7415 1.6312 2.0639 36 1 2.1860 3.1091 1.1770 37 1 3.7965 2.7724 3.3407 38 1 5.8236 0.1933 2.0818 39 1 8.2284 -0.0801 2.5135 40 1 9.4967 1.7093 3.6241 41 1 8.5649 7.3470 4.8525 42 1 9.5322 6.1256 5.7132 43 1 10.9173 5.7924 3.6836 44 1 9.9500 7.0138 2.8229 45 1 10.9561 7.4916 4.2117 46 1 7.4926 6.5444 2.6439 47 1 6.9464 4.8507 2.6780 48 1 5.8049 5.3787 4.8965 49 1 6.1704 7.0932 4.5882 50 1 5.1077 6.1961 3.4773 51 1 5.9281 4.0737 3.8716 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068958642.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:47 Heat of formation + Delta-G solvation = -14.424144 kcal Electronic energy + Delta-G solvation = -31816.455821 eV Core-core repulsion = 27716.983563 eV Total energy + Delta-G solvation = -4099.472258 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.76402 -40.66724 -38.98593 -37.42168 -37.24197 -35.23589 -33.74679 -33.70512 -31.72952 -31.31395 -30.58915 -30.20699 -28.26944 -25.63043 -25.38933 -24.55312 -23.67791 -23.34087 -22.23031 -21.31394 -20.09898 -18.95764 -18.44397 -18.11895 -17.37576 -17.30350 -17.12143 -16.79650 -16.34716 -15.84867 -15.62550 -15.43413 -15.29511 -15.02634 -14.82349 -14.57858 -14.45648 -14.11412 -13.96421 -13.84130 -13.60742 -13.48609 -13.30455 -13.07726 -13.03279 -12.88822 -12.76011 -12.68379 -12.54886 -12.29954 -12.18594 -12.07835 -12.01585 -11.93457 -11.80379 -11.52546 -11.13622 -10.99951 -10.70194 -10.24147 -9.85189 -9.75888 -8.94786 -8.72214 -7.81525 -5.19313 -0.02440 0.38321 1.48380 1.51470 1.55306 1.62482 1.92710 2.31412 2.49119 2.65041 2.94060 3.39439 3.41139 3.70058 3.82711 4.01217 4.11112 4.14561 4.18603 4.30268 4.37595 4.41289 4.42445 4.46860 4.48418 4.57668 4.69554 4.70917 4.76887 4.83803 4.85497 4.89435 4.96487 5.00643 5.07139 5.09684 5.21902 5.23963 5.29229 5.30810 5.41053 5.43805 5.47274 5.55647 5.61402 5.65288 5.68515 6.16718 6.24121 6.36670 6.91031 7.01498 7.22413 7.82677 8.00339 8.30484 9.23410 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.003266 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.991058 B = 8571.431157 C = 9727.190835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.140 3.860 3 N -0.593 5.593 4 C -0.250 4.250 5 H 0.067 0.933 6 C -0.042 4.042 7 N -0.920 5.920 8 Si 0.965 3.035 9 H -0.276 1.276 10 H -0.295 1.295 11 H -0.295 1.295 12 C 0.171 3.829 13 C 0.536 3.464 14 O -0.563 6.563 15 N -0.677 5.677 16 C 0.157 3.843 17 C -0.121 4.121 18 C -0.106 4.106 19 C -0.102 4.102 20 C -0.127 4.127 21 C 0.564 3.436 22 O -0.573 6.573 23 N -0.600 5.600 24 C 0.106 3.894 25 C -0.163 4.163 26 C 0.083 3.917 27 C -0.171 4.171 28 C -0.132 4.132 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.027 0.973 33 H 0.045 0.955 34 H 0.247 0.753 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.414 0.586 38 H 0.118 0.882 39 H 0.147 0.853 40 H 0.133 0.867 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.035 0.965 44 H 0.060 0.940 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.059 0.941 49 H 0.079 0.921 50 H 0.079 0.921 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 5.534 11.350 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.015 3.985 3 N -0.313 5.313 4 C -0.380 4.380 5 H 0.085 0.915 6 C -0.236 4.236 7 N -0.568 5.568 8 Si 0.796 3.204 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.223 1.223 12 C 0.040 3.960 13 C 0.325 3.675 14 O -0.439 6.439 15 N -0.324 5.324 16 C 0.060 3.940 17 C -0.142 4.142 18 C -0.125 4.125 19 C -0.122 4.122 20 C -0.131 4.131 21 C 0.353 3.647 22 O -0.454 6.454 23 N -0.331 5.331 24 C -0.016 4.016 25 C -0.221 4.221 26 C -0.039 4.039 27 C -0.229 4.229 28 C -0.152 4.152 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.251 0.749 38 H 0.136 0.864 39 H 0.165 0.835 40 H 0.151 0.849 41 H 0.125 0.875 42 H 0.091 0.909 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.106 0.894 46 H 0.111 0.889 47 H 0.099 0.901 48 H 0.077 0.923 49 H 0.098 0.902 50 H 0.098 0.902 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.611 5.092 11.136 13.085 hybrid contribution 0.227 0.597 -0.998 1.185 sum 4.838 5.689 10.138 12.592 Atomic orbital electron populations 1.22132 0.96653 1.01023 1.01180 1.20891 0.93900 0.84899 0.98832 1.43969 1.74612 1.10188 1.02546 1.19405 1.22536 1.06466 0.89608 0.91484 1.25382 0.97531 1.00866 0.99828 1.69671 1.32217 1.26114 1.28814 0.85370 0.77229 0.77745 0.80075 1.20205 1.22089 1.22260 1.20678 0.88167 1.00197 0.86925 1.22409 0.92759 0.75013 0.77335 1.90476 1.63651 1.41390 1.48409 1.43771 1.05973 1.58926 1.23685 1.17903 0.85589 0.93066 0.97398 1.21492 0.95811 0.97139 0.99750 1.21142 0.93236 0.99780 0.98337 1.21137 1.00446 0.92236 0.98346 1.19672 0.94111 0.95825 1.03456 1.18470 0.81879 0.83267 0.81070 1.90714 1.36161 1.83703 1.34788 1.48029 1.31838 1.05347 1.47891 1.21621 0.92335 0.90237 0.97382 1.22103 0.98112 1.01702 1.00222 1.22138 0.86341 1.02755 0.92651 1.22254 0.97467 1.02519 1.00638 1.21794 0.93030 0.98609 1.01815 0.91360 0.92881 0.94230 0.95415 0.93700 0.94303 0.91682 0.88225 0.74901 0.86387 0.83543 0.84878 0.87547 0.90852 0.94622 0.92096 0.89393 0.88867 0.90127 0.92260 0.90249 0.90225 0.82018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 10.21 71.98 0.74 -4.09 16 2 C 0.14 5.59 6.39 86.38 0.55 6.14 16 3 N -0.59 -27.79 2.03 -706.38 -1.43 -29.22 16 4 C -0.25 -13.11 9.74 84.03 0.82 -12.29 16 5 H 0.07 3.50 7.83 -2.91 -0.02 3.48 16 6 C -0.04 -2.18 5.28 84.86 0.45 -1.74 16 7 N -0.92 -48.05 8.18 21.65 0.18 -47.87 16 8 Si 0.97 43.97 29.56 68.60 2.03 45.99 16 9 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 10 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 11 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 12 C 0.17 7.18 5.40 85.63 0.46 7.65 16 13 C 0.54 23.21 5.56 87.66 0.49 23.69 16 14 O -0.56 -29.50 13.57 -3.04 -0.04 -29.54 16 15 N -0.68 -23.38 5.33 -303.60 -1.62 -25.00 16 16 C 0.16 5.44 6.28 38.11 0.24 5.68 16 17 C -0.12 -4.42 8.69 22.44 0.19 -4.23 16 18 C -0.11 -3.32 10.02 22.21 0.22 -3.10 16 19 C -0.10 -3.13 9.63 22.54 0.22 -2.91 16 20 C -0.13 -3.92 5.29 -20.10 -0.11 -4.02 16 21 C 0.56 16.98 7.34 86.79 0.64 17.62 16 22 O -0.57 -20.36 16.47 -3.85 -0.06 -20.42 16 23 N -0.60 -14.08 2.48 -825.19 -2.04 -16.13 16 24 C 0.11 1.96 6.19 86.38 0.53 2.50 16 25 C -0.16 -2.84 10.24 71.98 0.74 -2.11 16 26 C 0.08 1.74 5.59 86.38 0.48 2.23 16 27 C -0.17 -2.91 8.92 71.98 0.64 -2.26 16 28 C -0.13 -3.94 7.29 22.66 0.17 -3.78 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.03 1.17 8.08 -2.39 -0.02 1.15 16 33 H 0.04 1.69 8.04 -2.39 -0.02 1.67 16 34 H 0.25 12.90 8.31 -92.70 -0.77 12.13 16 35 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 36 H 0.10 4.51 6.32 -2.38 -0.02 4.49 16 37 H 0.41 11.20 8.82 -92.71 -0.82 10.38 16 38 H 0.12 4.86 6.27 -2.91 -0.02 4.84 16 39 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 40 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 41 H 0.11 1.35 8.07 -2.39 -0.02 1.33 16 42 H 0.07 1.56 7.35 -2.39 -0.02 1.54 16 43 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.09 1.66 8.13 -2.38 -0.02 1.64 16 47 H 0.08 2.13 4.73 -2.39 -0.01 2.12 16 48 H 0.06 1.07 6.80 -2.39 -0.02 1.05 16 49 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.16 4.09 3.27 -2.91 -0.01 4.08 16 Total: -1.00 -69.44 408.34 4.60 -64.84 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: 0.12 Total: 32.37 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: 7.47 Total: 24.98 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -4.92 Total: -118.22 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -0.10 Total: -49.96 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -69.44 4.60 -64.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068958642.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.415 kcal (2) G-P(sol) polarization free energy of solvation -69.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds