Wall clock time and date at job start Wed Apr 1 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46506 * 109.47380 * 2 1 4 4 C 1.36935 * 119.99909 * 269.81339 * 3 2 1 5 5 H 1.07992 * 120.00148 * 322.08401 * 4 3 2 6 6 C 1.38817 * 119.99709 * 142.08713 * 4 3 2 7 7 N 1.31614 * 120.00101 * 157.00174 * 6 4 3 8 8 Si 1.86799 * 119.99874 * 336.99564 * 6 4 3 9 9 H 1.48505 * 109.46995 * 95.70850 * 8 6 4 10 10 H 1.48502 * 109.47161 * 215.70421 * 8 6 4 11 11 H 1.48496 * 109.47561 * 335.70782 * 8 6 4 12 12 C 1.46504 * 119.99591 * 89.81086 * 3 2 1 13 13 C 1.50703 * 109.46751 * 90.00658 * 12 3 2 14 14 O 1.21277 * 120.00344 * 359.97438 * 13 12 3 15 15 N 1.34773 * 119.99861 * 179.97438 * 13 12 3 16 16 C 1.47083 * 120.88518 * 179.97438 * 15 13 12 17 17 C 1.53235 * 108.52371 * 231.20547 * 16 15 13 18 18 N 1.46901 * 109.33917 * 306.16845 * 17 16 15 19 19 C 1.39936 * 110.99592 * 187.25188 * 18 17 16 20 20 C 1.38858 * 120.02386 * 359.72793 * 19 18 17 21 21 C 1.38114 * 119.98403 * 179.74263 * 20 19 18 22 22 C 1.38702 * 120.01390 * 0.50696 * 21 20 19 23 23 O 1.36005 * 119.97928 * 179.74758 * 22 21 20 24 24 C 1.42900 * 116.99884 * 0.02562 * 23 22 21 25 25 C 1.38704 * 120.03988 * 359.76812 * 22 21 20 26 26 C 1.38101 * 120.02091 * 359.97438 * 25 22 21 27 27 C 1.46903 * 111.26840 * 63.10906 * 18 17 16 28 28 C 1.47088 * 120.88099 * 0.02562 * 15 13 12 29 29 H 1.09004 * 109.47404 * 300.00210 * 1 2 3 30 30 H 1.09002 * 109.47229 * 59.99554 * 1 2 3 31 31 H 1.08993 * 109.47460 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47187 * 240.00152 * 2 1 3 33 33 H 1.09002 * 109.47229 * 120.00446 * 2 1 3 34 34 H 0.97000 * 120.00364 * 180.02562 * 7 6 4 35 35 H 1.08995 * 109.47309 * 330.00239 * 12 3 2 36 36 H 1.08999 * 109.46807 * 210.00084 * 12 3 2 37 37 H 1.09001 * 109.62409 * 111.49156 * 16 15 13 38 38 H 1.09004 * 109.62394 * 350.91811 * 16 15 13 39 39 H 1.08996 * 109.49416 * 186.20683 * 17 16 15 40 40 H 1.09004 * 109.51549 * 66.13910 * 17 16 15 41 41 H 1.08001 * 120.00593 * 359.97438 * 20 19 18 42 42 H 1.07993 * 119.99412 * 180.27666 * 21 20 19 43 43 H 1.09001 * 109.47479 * 180.02562 * 24 23 22 44 44 H 1.09006 * 109.47334 * 300.00372 * 24 23 22 45 45 H 1.09007 * 109.47172 * 60.00080 * 24 23 22 46 46 H 1.08000 * 119.98856 * 179.97438 * 25 22 21 47 47 H 1.07995 * 120.01340 * 180.02562 * 26 25 22 48 48 H 1.08995 * 109.49876 * 56.85038 * 27 18 17 49 49 H 1.08997 * 109.48994 * 176.93648 * 27 18 17 50 50 H 1.08999 * 109.62715 * 248.50540 * 28 15 13 51 51 H 1.09001 * 109.62582 * 9.08547 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2502 2.0254 -1.1859 5 1 2.6716 1.4851 -2.0206 6 6 1.9437 3.3732 -1.3151 7 7 2.5471 4.1004 -2.2312 8 14 0.6746 4.1545 -0.1889 9 1 1.3618 4.7999 0.9586 10 1 -0.0946 5.1763 -0.9435 11 1 -0.2520 3.1086 0.3137 12 6 2.2586 2.0732 1.2688 13 6 3.6806 1.8368 1.7084 14 8 4.4203 1.1570 1.0291 15 7 4.1302 2.3810 2.8565 16 6 5.5141 2.1625 3.3043 17 6 5.4846 1.6758 4.7570 18 7 4.7102 2.6219 5.5714 19 6 4.7968 2.3010 6.9308 20 6 5.5424 1.2032 7.3394 21 6 5.6316 0.8904 8.6817 22 6 4.9680 1.6664 9.6205 23 8 5.0521 1.3547 10.9417 24 6 5.8414 0.2157 11.2905 25 6 4.2182 2.7597 9.2127 26 6 4.1323 3.0771 7.8714 27 6 3.3095 2.6806 5.1325 28 6 3.2497 3.2081 3.6955 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.3332 5.0422 -2.3213 35 1 1.5755 1.6899 2.0267 36 1 2.0920 3.1422 1.1368 37 1 6.0707 3.0977 3.2426 38 1 5.9878 1.4090 2.6751 39 1 6.5029 1.6142 5.1407 40 1 5.0188 0.6913 4.8018 41 1 6.0556 0.5964 6.6081 42 1 6.2152 0.0394 9.0001 43 1 5.8239 0.0788 12.3718 44 1 5.4336 -0.6713 10.8057 45 1 6.8686 0.3705 10.9601 46 1 3.7015 3.3631 9.9444 47 1 3.5489 3.9286 7.5540 48 1 2.8739 1.6823 5.1716 49 1 2.7506 3.3479 5.7886 50 1 3.5883 4.2439 3.6716 51 1 2.2265 3.1458 3.3250 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068959202.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:37 Heat of formation + Delta-G solvation = 11.895634 kcal Electronic energy + Delta-G solvation = -31160.682356 eV Core-core repulsion = 27062.351409 eV Total energy + Delta-G solvation = -4098.330947 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.83284 -39.77703 -38.61822 -36.78871 -35.64970 -34.14744 -32.04072 -31.91641 -31.03654 -30.02373 -29.58686 -27.95375 -26.91434 -25.92617 -24.36609 -23.74710 -22.52399 -21.93944 -21.11993 -20.19038 -18.85356 -18.57469 -17.41085 -16.81452 -16.53091 -16.15625 -16.03772 -15.62086 -15.33305 -15.20211 -15.15173 -14.55476 -14.50773 -14.16861 -13.94334 -13.62218 -13.47585 -13.21364 -13.05572 -12.94606 -12.67508 -12.62508 -12.29077 -12.27766 -11.94546 -11.79864 -11.56788 -11.42796 -11.40815 -11.34287 -11.27319 -10.90844 -10.89613 -10.61172 -10.18760 -10.01439 -9.63870 -9.63303 -9.27924 -9.14399 -8.52121 -8.30561 -7.74630 -6.87965 -6.00774 -3.41096 1.04544 1.15611 2.97891 3.17563 3.19750 3.33911 3.41283 3.43411 3.47191 3.67838 4.44034 4.46276 4.55216 4.66304 4.71682 4.77651 4.79986 4.91824 4.94987 5.00540 5.08545 5.14608 5.16438 5.22233 5.27965 5.29978 5.33845 5.46501 5.51438 5.66097 5.77549 5.79121 5.88207 5.89443 5.94373 6.02642 6.03028 6.06354 6.12056 6.25939 6.31535 6.34477 6.49073 6.75110 6.80720 6.83399 6.92318 7.05578 7.16962 7.80559 8.03600 8.40981 8.83153 9.00994 9.67444 10.06442 11.14945 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018929 B = 0.002388 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.877554 B =11724.128453 C =11890.545812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.150 3.850 3 N -0.580 5.580 4 C -0.257 4.257 5 H 0.080 0.920 6 C 0.033 3.967 7 N -0.894 5.894 8 Si 0.865 3.135 9 H -0.285 1.285 10 H -0.297 1.297 11 H -0.263 1.263 12 C 0.121 3.879 13 C 0.491 3.509 14 O -0.517 6.517 15 N -0.630 5.630 16 C 0.115 3.885 17 C 0.040 3.960 18 N -0.485 5.485 19 C 0.082 3.918 20 C -0.132 4.132 21 C -0.180 4.180 22 C 0.096 3.904 23 O -0.321 6.321 24 C 0.028 3.972 25 C -0.125 4.125 26 C -0.101 4.101 27 C 0.044 3.956 28 C 0.113 3.887 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.036 0.964 34 H 0.263 0.737 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.098 0.902 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.132 0.868 47 H 0.134 0.866 48 H 0.049 0.951 49 H 0.092 0.908 50 H 0.075 0.925 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.551 -5.050 26.194 26.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.024 3.976 3 N -0.300 5.300 4 C -0.386 4.386 5 H 0.097 0.903 6 C -0.168 4.168 7 N -0.534 5.534 8 Si 0.694 3.306 9 H -0.214 1.214 10 H -0.225 1.225 11 H -0.187 1.187 12 C -0.010 4.010 13 C 0.278 3.722 14 O -0.389 6.389 15 N -0.369 5.369 16 C -0.009 4.009 17 C -0.088 4.088 18 N -0.201 5.201 19 C -0.015 4.015 20 C -0.153 4.153 21 C -0.199 4.199 22 C 0.051 3.949 23 O -0.235 6.235 24 C -0.067 4.067 25 C -0.144 4.144 26 C -0.121 4.121 27 C -0.082 4.082 28 C -0.011 4.011 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.067 0.933 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.116 0.884 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.150 0.850 47 H 0.151 0.849 48 H 0.068 0.932 49 H 0.110 0.890 50 H 0.093 0.907 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.037 -4.742 25.628 26.374 hybrid contribution -0.626 -0.123 0.750 0.985 sum 3.411 -4.866 26.378 27.039 Atomic orbital electron populations 1.22332 0.99376 0.99371 1.01684 1.20837 0.91515 0.85752 0.99463 1.43790 1.73741 1.11545 1.00889 1.18775 1.36124 0.93409 0.90274 0.90284 1.25496 0.97949 0.96701 0.96632 1.69896 1.40552 1.06808 1.36182 0.87098 0.84187 0.79052 0.80263 1.21379 1.22490 1.18720 1.21372 0.90388 0.99164 0.90043 1.22993 0.92510 0.78117 0.78579 1.90604 1.58002 1.38135 1.52208 1.48609 1.11796 1.52823 1.23673 1.21562 0.84682 1.02102 0.92526 1.22696 0.98642 0.93624 0.93821 1.59149 1.12088 1.48381 1.00467 1.18931 0.99058 0.94173 0.89379 1.21150 1.02055 0.96254 0.95835 1.21083 1.03753 1.01789 0.93304 1.18946 0.97576 0.95749 0.82658 1.86072 1.68355 1.47292 1.21758 1.23021 0.94668 0.87129 1.01869 1.20286 1.01297 0.97056 0.95800 1.20627 1.00725 0.99639 0.91129 1.22676 0.87069 1.01415 0.97029 1.21749 0.95524 0.95342 0.88512 0.94101 0.92316 0.94049 0.92668 0.94575 0.92696 0.91512 0.90151 0.91281 0.88504 0.89222 0.93283 0.85196 0.85553 0.88378 0.92784 0.92757 0.85050 0.84865 0.93249 0.89002 0.90658 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 10.24 37.15 0.38 -2.66 16 2 C 0.15 3.08 6.39 -4.04 -0.03 3.06 16 3 N -0.58 -13.99 1.56 -174.61 -0.27 -14.26 16 4 C -0.26 -7.31 9.90 -15.06 -0.15 -7.46 16 5 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 6 C 0.03 0.94 5.29 -17.43 -0.09 0.85 16 7 N -0.89 -27.42 13.97 55.49 0.78 -26.65 16 8 Si 0.86 21.04 25.10 -169.99 -4.27 16.77 16 9 H -0.29 -6.53 6.68 56.52 0.38 -6.15 16 10 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 11 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 12 C 0.12 2.57 3.36 -5.19 -0.02 2.56 16 13 C 0.49 10.34 7.78 -10.99 -0.09 10.25 16 14 O -0.52 -12.85 15.88 5.56 0.09 -12.76 16 15 N -0.63 -10.43 3.01 -172.48 -0.52 -10.95 16 16 C 0.11 1.64 6.60 -3.60 -0.02 1.62 16 17 C 0.04 0.45 4.30 -3.70 -0.02 0.44 16 18 N -0.49 -5.45 4.68 -170.79 -0.80 -6.25 16 19 C 0.08 0.87 5.65 -83.69 -0.47 0.40 16 20 C -0.13 -1.31 8.82 -39.40 -0.35 -1.66 16 21 C -0.18 -1.66 9.03 -39.46 -0.36 -2.01 16 22 C 0.10 0.95 6.69 -39.24 -0.26 0.69 16 23 O -0.32 -3.00 10.50 -19.76 -0.21 -3.21 16 24 C 0.03 0.16 9.81 101.05 0.99 1.15 16 25 C -0.13 -1.19 9.98 -39.46 -0.39 -1.59 16 26 C -0.10 -0.97 9.14 -39.40 -0.36 -1.34 16 27 C 0.04 0.48 5.43 -3.72 -0.02 0.46 16 28 C 0.11 1.49 6.50 -3.62 -0.02 1.47 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 1.16 8.04 -51.93 -0.42 0.75 16 33 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.07 1.20 7.59 -51.93 -0.39 0.81 16 36 H 0.08 1.82 3.23 -51.93 -0.17 1.65 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.10 1.52 7.06 -51.93 -0.37 1.15 16 39 H 0.09 0.87 6.90 -51.93 -0.36 0.51 16 40 H 0.05 0.58 7.81 -51.93 -0.41 0.17 16 41 H 0.13 1.15 5.80 -52.49 -0.30 0.85 16 42 H 0.13 0.90 6.29 -52.49 -0.33 0.57 16 43 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.05 0.26 7.66 -51.93 -0.40 -0.13 16 45 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 46 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 47 H 0.13 1.09 7.15 -52.49 -0.38 0.72 16 48 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.09 0.81 6.66 -51.93 -0.35 0.46 16 50 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 51 H 0.09 1.18 6.02 -51.93 -0.31 0.86 16 LS Contribution 397.84 15.07 6.00 6.00 Total: -1.00 -34.69 397.84 -8.44 -43.13 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -7.96 Total: 1.96 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.27 Total: 6.23 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.81 Total: -58.12 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.12 Total: -15.97 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.27 Total: 16.77 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.69 -8.44 -43.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068959202.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.022 kcal (2) G-P(sol) polarization free energy of solvation -34.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds