Wall clock time and date at job start Wed Apr 1 2020 05:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46506 * 109.47380 * 2 1 4 4 C 1.36935 * 119.99909 * 269.81339 * 3 2 1 5 5 H 1.07992 * 120.00148 * 322.08401 * 4 3 2 6 6 C 1.38817 * 119.99709 * 142.08713 * 4 3 2 7 7 N 1.31614 * 120.00101 * 157.00174 * 6 4 3 8 8 Si 1.86799 * 119.99874 * 336.99564 * 6 4 3 9 9 H 1.48505 * 109.46995 * 95.70850 * 8 6 4 10 10 H 1.48502 * 109.47161 * 215.70421 * 8 6 4 11 11 H 1.48496 * 109.47561 * 335.70782 * 8 6 4 12 12 C 1.46504 * 119.99591 * 89.81086 * 3 2 1 13 13 C 1.50703 * 109.46751 * 90.00658 * 12 3 2 14 14 O 1.21277 * 120.00344 * 359.97438 * 13 12 3 15 15 N 1.34773 * 119.99861 * 179.97438 * 13 12 3 16 16 C 1.47083 * 120.88518 * 179.97438 * 15 13 12 17 17 C 1.53235 * 108.52371 * 231.20547 * 16 15 13 18 18 N 1.46901 * 109.33917 * 306.16845 * 17 16 15 19 19 C 1.39936 * 110.99592 * 187.25188 * 18 17 16 20 20 C 1.38858 * 120.02386 * 359.72793 * 19 18 17 21 21 C 1.38114 * 119.98403 * 179.74263 * 20 19 18 22 22 C 1.38702 * 120.01390 * 0.50696 * 21 20 19 23 23 O 1.36005 * 119.97928 * 179.74758 * 22 21 20 24 24 C 1.42900 * 116.99884 * 0.02562 * 23 22 21 25 25 C 1.38704 * 120.03988 * 359.76812 * 22 21 20 26 26 C 1.38101 * 120.02091 * 359.97438 * 25 22 21 27 27 C 1.46903 * 111.26840 * 63.10906 * 18 17 16 28 28 C 1.47088 * 120.88099 * 0.02562 * 15 13 12 29 29 H 1.09004 * 109.47404 * 300.00210 * 1 2 3 30 30 H 1.09002 * 109.47229 * 59.99554 * 1 2 3 31 31 H 1.08993 * 109.47460 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47187 * 240.00152 * 2 1 3 33 33 H 1.09002 * 109.47229 * 120.00446 * 2 1 3 34 34 H 0.97000 * 120.00364 * 180.02562 * 7 6 4 35 35 H 1.08995 * 109.47309 * 330.00239 * 12 3 2 36 36 H 1.08999 * 109.46807 * 210.00084 * 12 3 2 37 37 H 1.09001 * 109.62409 * 111.49156 * 16 15 13 38 38 H 1.09004 * 109.62394 * 350.91811 * 16 15 13 39 39 H 1.08996 * 109.49416 * 186.20683 * 17 16 15 40 40 H 1.09004 * 109.51549 * 66.13910 * 17 16 15 41 41 H 1.08001 * 120.00593 * 359.97438 * 20 19 18 42 42 H 1.07993 * 119.99412 * 180.27666 * 21 20 19 43 43 H 1.09001 * 109.47479 * 180.02562 * 24 23 22 44 44 H 1.09006 * 109.47334 * 300.00372 * 24 23 22 45 45 H 1.09007 * 109.47172 * 60.00080 * 24 23 22 46 46 H 1.08000 * 119.98856 * 179.97438 * 25 22 21 47 47 H 1.07995 * 120.01340 * 180.02562 * 26 25 22 48 48 H 1.08995 * 109.49876 * 56.85038 * 27 18 17 49 49 H 1.08997 * 109.48994 * 176.93648 * 27 18 17 50 50 H 1.08999 * 109.62715 * 248.50540 * 28 15 13 51 51 H 1.09001 * 109.62582 * 9.08547 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2502 2.0254 -1.1859 5 1 2.6716 1.4851 -2.0206 6 6 1.9437 3.3732 -1.3151 7 7 2.5471 4.1004 -2.2312 8 14 0.6746 4.1545 -0.1889 9 1 1.3618 4.7999 0.9586 10 1 -0.0946 5.1763 -0.9435 11 1 -0.2520 3.1086 0.3137 12 6 2.2586 2.0732 1.2688 13 6 3.6806 1.8368 1.7084 14 8 4.4203 1.1570 1.0291 15 7 4.1302 2.3810 2.8565 16 6 5.5141 2.1625 3.3043 17 6 5.4846 1.6758 4.7570 18 7 4.7102 2.6219 5.5714 19 6 4.7968 2.3010 6.9308 20 6 5.5424 1.2032 7.3394 21 6 5.6316 0.8904 8.6817 22 6 4.9680 1.6664 9.6205 23 8 5.0521 1.3547 10.9417 24 6 5.8414 0.2157 11.2905 25 6 4.2182 2.7597 9.2127 26 6 4.1323 3.0771 7.8714 27 6 3.3095 2.6806 5.1325 28 6 3.2497 3.2081 3.6955 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.3332 5.0422 -2.3213 35 1 1.5755 1.6899 2.0267 36 1 2.0920 3.1422 1.1368 37 1 6.0707 3.0977 3.2426 38 1 5.9878 1.4090 2.6751 39 1 6.5029 1.6142 5.1407 40 1 5.0188 0.6913 4.8018 41 1 6.0556 0.5964 6.6081 42 1 6.2152 0.0394 9.0001 43 1 5.8239 0.0788 12.3718 44 1 5.4336 -0.6713 10.8057 45 1 6.8686 0.3705 10.9601 46 1 3.7015 3.3631 9.9444 47 1 3.5489 3.9286 7.5540 48 1 2.8739 1.6823 5.1716 49 1 2.7506 3.3479 5.7886 50 1 3.5883 4.2439 3.6716 51 1 2.2265 3.1458 3.3250 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068959202.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:36 Heat of formation + Delta-G solvation = -11.406309 kcal Electronic energy + Delta-G solvation = -31161.692804 eV Core-core repulsion = 27062.351409 eV Total energy + Delta-G solvation = -4099.341395 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.69670 -40.85104 -39.70938 -37.91189 -37.28992 -35.30398 -34.00331 -32.95022 -32.00592 -31.41084 -30.55550 -29.02536 -28.09044 -26.92901 -25.77356 -25.15901 -23.47221 -22.82879 -22.24321 -21.67232 -20.23313 -19.28516 -18.81915 -18.44860 -17.49151 -17.30604 -17.09663 -16.65244 -16.59899 -16.44092 -16.01881 -15.85349 -15.70833 -15.29249 -15.17397 -14.89655 -14.64278 -14.53066 -14.29133 -14.15437 -13.81871 -13.69917 -13.52982 -13.38424 -13.12402 -13.08827 -12.87833 -12.60923 -12.53115 -12.39593 -12.33906 -12.27267 -12.08284 -12.03051 -11.65536 -11.62110 -11.60422 -10.89249 -10.57419 -10.43278 -9.96655 -9.62245 -8.82525 -8.49932 -8.19658 -5.60018 0.36251 0.43451 1.26631 1.43432 1.55109 1.76925 1.97783 2.41750 2.43133 2.59376 2.88263 3.00637 3.33951 3.61105 3.78969 3.83489 3.90789 3.94720 4.09979 4.16276 4.26786 4.29526 4.31500 4.36401 4.37679 4.40022 4.40452 4.46964 4.54214 4.56053 4.64138 4.71264 4.74872 4.76095 4.78811 4.80793 4.97028 5.01525 5.04096 5.09250 5.23683 5.25860 5.37557 5.53872 5.54547 5.63453 5.91104 5.95726 6.17186 6.17772 6.41338 6.51637 6.91315 7.32820 7.59374 7.98594 9.00700 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018929 B = 0.002388 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.877554 B =11724.128453 C =11890.545812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.145 3.855 3 N -0.593 5.593 4 C -0.255 4.255 5 H 0.022 0.978 6 C -0.029 4.029 7 N -0.951 5.951 8 Si 0.940 3.060 9 H -0.257 1.257 10 H -0.307 1.307 11 H -0.238 1.238 12 C 0.118 3.882 13 C 0.487 3.513 14 O -0.571 6.571 15 N -0.624 5.624 16 C 0.113 3.887 17 C 0.053 3.947 18 N -0.489 5.489 19 C 0.067 3.933 20 C -0.139 4.139 21 C -0.184 4.184 22 C 0.087 3.913 23 O -0.337 6.337 24 C 0.020 3.980 25 C -0.134 4.134 26 C -0.101 4.101 27 C 0.050 3.950 28 C 0.104 3.896 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.055 0.945 34 H 0.264 0.736 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.046 0.954 41 H 0.137 0.863 42 H 0.144 0.856 43 H 0.117 0.883 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.143 0.857 47 H 0.148 0.852 48 H 0.048 0.952 49 H 0.119 0.881 50 H 0.082 0.918 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.996 -4.949 30.498 30.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.020 3.980 3 N -0.314 5.314 4 C -0.385 4.385 5 H 0.040 0.960 6 C -0.225 4.225 7 N -0.594 5.594 8 Si 0.766 3.234 9 H -0.184 1.184 10 H -0.235 1.235 11 H -0.161 1.161 12 C -0.011 4.011 13 C 0.274 3.726 14 O -0.448 6.448 15 N -0.360 5.360 16 C -0.010 4.010 17 C -0.075 4.075 18 N -0.206 5.206 19 C -0.030 4.030 20 C -0.160 4.160 21 C -0.203 4.203 22 C 0.041 3.959 23 O -0.252 6.252 24 C -0.075 4.075 25 C -0.153 4.153 26 C -0.121 4.121 27 C -0.076 4.076 28 C -0.018 4.018 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.125 0.875 40 H 0.065 0.935 41 H 0.154 0.846 42 H 0.162 0.838 43 H 0.135 0.865 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.161 0.839 47 H 0.166 0.834 48 H 0.066 0.934 49 H 0.137 0.863 50 H 0.100 0.900 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.477 -4.653 30.032 30.491 hybrid contribution 0.009 -0.242 -0.507 0.562 sum 2.486 -4.895 29.524 30.030 Atomic orbital electron populations 1.22181 0.96689 1.01486 1.01172 1.20960 0.93566 0.84012 0.99434 1.43856 1.74540 1.12572 1.00459 1.18503 1.35429 0.93593 0.90984 0.96001 1.26251 0.99776 0.97194 0.99298 1.70063 1.42553 1.07247 1.39526 0.85896 0.80744 0.78224 0.78574 1.18366 1.23494 1.16071 1.21473 0.91516 0.98463 0.89689 1.22827 0.92285 0.78033 0.79427 1.90588 1.59093 1.40871 1.54271 1.48551 1.13088 1.51739 1.22620 1.21649 0.83333 1.01807 0.94211 1.22542 0.99918 0.93328 0.91727 1.59157 1.12231 1.48297 1.00866 1.19004 1.00071 0.94966 0.88953 1.21303 1.02032 0.96321 0.96355 1.21284 1.03746 1.02263 0.92985 1.19176 0.97584 0.95959 0.83135 1.86053 1.69030 1.48633 1.21454 1.23281 0.94672 0.86282 1.03235 1.20518 1.01409 0.97259 0.96162 1.20789 1.00513 0.99790 0.90965 1.22663 0.87334 1.01882 0.95678 1.22055 0.95238 0.95159 0.89389 0.92690 0.94551 0.90684 0.94756 0.92662 0.92763 0.87190 0.91105 0.90946 0.90523 0.87467 0.93540 0.84568 0.83832 0.86511 0.92077 0.92004 0.83902 0.83424 0.93361 0.86310 0.90016 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.25 10.24 71.98 0.74 -4.51 16 2 C 0.14 5.88 6.39 86.38 0.55 6.43 16 3 N -0.59 -28.66 1.56 -706.34 -1.10 -29.76 16 4 C -0.26 -15.13 9.90 84.04 0.83 -14.30 16 5 H 0.02 1.51 8.06 -2.91 -0.02 1.49 16 6 C -0.03 -1.73 5.29 84.86 0.45 -1.28 16 7 N -0.95 -60.84 13.97 21.65 0.30 -60.54 16 8 Si 0.94 43.14 25.10 68.60 1.72 44.86 16 9 H -0.26 -10.55 6.68 99.48 0.66 -9.88 16 10 H -0.31 -14.48 7.11 99.48 0.71 -13.77 16 11 H -0.24 -9.87 7.11 99.48 0.71 -9.16 16 12 C 0.12 4.81 3.36 85.63 0.29 5.10 16 13 C 0.49 20.30 7.78 87.66 0.68 20.98 16 14 O -0.57 -29.25 15.88 -3.02 -0.05 -29.30 16 15 N -0.62 -19.76 3.01 -818.00 -2.46 -22.22 16 16 C 0.11 3.15 6.60 86.35 0.57 3.72 16 17 C 0.05 1.09 4.30 86.38 0.37 1.47 16 18 N -0.49 -9.61 4.68 -694.26 -3.25 -12.86 16 19 C 0.07 1.23 5.65 38.15 0.22 1.45 16 20 C -0.14 -2.42 8.82 22.39 0.20 -2.23 16 21 C -0.18 -2.95 9.03 22.35 0.20 -2.75 16 22 C 0.09 1.53 6.69 22.49 0.15 1.68 16 23 O -0.34 -5.61 10.50 -93.61 -0.98 -6.59 16 24 C 0.02 0.17 9.81 113.37 1.11 1.29 16 25 C -0.13 -2.23 9.98 22.35 0.22 -2.01 16 26 C -0.10 -1.64 9.14 22.39 0.20 -1.44 16 27 C 0.05 0.91 5.43 86.37 0.47 1.38 16 28 C 0.10 2.43 6.50 86.33 0.56 2.99 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.03 1.50 8.04 -2.39 -0.02 1.48 16 33 H 0.05 2.01 8.07 -2.39 -0.02 1.99 16 34 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 35 H 0.11 3.49 7.59 -2.39 -0.02 3.47 16 36 H 0.07 3.03 3.23 -2.39 -0.01 3.02 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.08 2.46 7.06 -2.38 -0.02 2.44 16 39 H 0.11 1.86 6.90 -2.39 -0.02 1.84 16 40 H 0.05 1.00 7.81 -2.38 -0.02 0.99 16 41 H 0.14 2.10 5.80 -2.91 -0.02 2.09 16 42 H 0.14 1.68 6.29 -2.91 -0.02 1.67 16 43 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.06 0.45 7.66 -2.38 -0.02 0.44 16 45 H 0.06 0.45 7.66 -2.38 -0.02 0.43 16 46 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 47 H 0.15 1.89 7.15 -2.91 -0.02 1.86 16 48 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.12 1.55 6.66 -2.39 -0.02 1.53 16 50 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.10 2.16 6.02 -2.39 -0.01 2.15 16 Total: -1.00 -80.08 397.84 2.88 -77.20 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.89 Total: 21.25 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 7.82 Total: 17.97 kcal Atomic # 7 Polarization: -118.87 SS G_CDS: -6.51 Total: -125.38 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -1.03 Total: -35.89 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.72 Total: 44.86 kcal Total: -80.08 2.88 -77.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068959202.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.789 kcal (2) G-P(sol) polarization free energy of solvation -80.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds