Wall clock time and date at job start Wed Apr 1 2020 05:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47002 * 2 1 4 4 C 1.46500 * 119.99905 * 269.99627 * 3 2 1 5 5 C 1.53000 * 109.47454 * 283.44412 * 4 3 2 6 6 C 1.34780 * 120.00172 * 89.99917 * 3 2 1 7 7 O 1.21550 * 119.99892 * 357.20059 * 6 3 2 8 8 C 1.47860 * 120.00039 * 177.19157 * 6 3 2 9 9 C 1.39620 * 120.11081 * 321.19822 * 8 6 3 10 10 C 1.37982 * 119.99349 * 180.02562 * 9 8 6 11 11 C 1.38257 * 120.22392 * 359.74396 * 10 9 8 12 12 C 1.38952 * 120.21995 * 0.51116 * 11 10 9 13 13 N 1.39954 * 119.99887 * 179.76245 * 12 11 10 14 14 C 1.34775 * 119.99983 * 215.33611 * 13 12 11 15 15 O 1.21283 * 120.00156 * 356.37123 * 14 13 12 16 16 C 1.50710 * 119.99534 * 176.37074 * 14 13 12 17 17 H 1.08995 * 109.47237 * 59.99899 * 16 14 13 18 18 C 1.53000 * 109.46868 * 299.99821 * 16 14 13 19 19 N 1.46497 * 109.46582 * 180.02562 * 16 14 13 20 20 C 1.46506 * 120.00298 * 60.00090 * 19 16 14 21 21 C 1.36935 * 119.99834 * 239.99822 * 19 16 14 22 22 H 1.07994 * 120.00247 * 29.70794 * 21 19 16 23 23 C 1.38818 * 120.00099 * 209.71222 * 21 19 16 24 24 N 1.31623 * 119.99873 * 7.39714 * 23 21 19 25 25 Si 1.86803 * 120.00189 * 187.39780 * 23 21 19 26 26 H 1.48501 * 109.46708 * 59.99876 * 25 23 21 27 27 H 1.48497 * 109.47162 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.46850 * 300.00215 * 25 23 21 29 29 C 1.38640 * 120.00297 * 359.49141 * 12 11 10 30 30 H 1.08997 * 109.46740 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46853 * 299.99905 * 1 2 3 32 32 H 1.08997 * 109.46745 * 60.00109 * 1 2 3 33 33 H 1.08997 * 109.47116 * 239.99614 * 2 1 3 34 34 H 1.09006 * 109.47336 * 119.99953 * 2 1 3 35 35 H 1.09004 * 109.46914 * 43.44487 * 4 3 2 36 36 H 1.09007 * 109.47112 * 163.44204 * 4 3 2 37 37 H 1.08997 * 109.47203 * 191.54166 * 5 4 3 38 38 H 1.09006 * 109.46898 * 311.53930 * 5 4 3 39 39 H 1.08997 * 109.47111 * 71.54071 * 5 4 3 40 40 H 1.07999 * 120.00367 * 359.97438 * 9 8 6 41 41 H 1.07997 * 119.88594 * 180.02562 * 10 9 8 42 42 H 1.07995 * 119.88844 * 180.25527 * 11 10 9 43 43 H 0.97001 * 119.99640 * 35.33631 * 13 12 11 44 44 H 1.09004 * 109.47097 * 299.99862 * 18 16 14 45 45 H 1.08997 * 109.46674 * 180.02562 * 18 16 14 46 46 H 1.08996 * 109.47341 * 60.00715 * 18 16 14 47 47 H 1.09002 * 109.46964 * 95.12687 * 20 19 16 48 48 H 1.08997 * 109.46804 * 215.12660 * 20 19 16 49 49 H 1.08998 * 109.46633 * 335.13037 * 20 19 16 50 50 H 0.96991 * 119.99724 * 179.97438 * 24 23 21 51 51 H 1.07994 * 120.10978 * 180.23236 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.5735 1.5708 -1.8781 6 6 2.2429 2.0166 1.1672 7 8 1.9923 1.4618 2.2192 8 6 2.7945 3.3885 1.1679 9 6 3.7793 3.7480 0.2459 10 6 4.2927 5.0287 0.2491 11 6 3.8315 5.9611 1.1598 12 6 2.8554 5.6117 2.0849 13 7 2.3954 6.5578 3.0079 14 6 2.0624 6.1747 4.2564 15 8 2.0983 5.0012 4.5606 16 6 1.6453 7.2047 5.2745 17 1 0.7614 7.7324 4.9164 18 6 2.7849 8.2034 5.4859 19 7 1.3373 6.5402 6.5433 20 6 2.3693 5.7602 7.2311 21 6 0.0849 6.6481 7.0864 22 1 -0.7735 6.7738 6.4433 23 6 -0.0813 6.5961 8.4636 24 7 0.9714 6.5898 9.2537 25 14 -1.7988 6.5350 9.1955 26 1 -2.5039 5.3244 8.7030 27 1 -1.7043 6.4840 10.6766 28 1 -2.5536 7.7473 8.7886 29 6 2.3331 4.3275 2.0900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.4415 1.8693 -1.9565 36 1 2.3313 3.1450 -1.0909 37 1 3.8606 2.2191 -2.7059 38 1 4.3554 1.5834 -1.1186 39 1 3.4386 0.5529 -2.2437 40 1 4.1399 3.0234 -0.4693 41 1 5.0542 5.3050 -0.4652 42 1 4.2341 6.9632 1.1547 43 1 2.3163 7.4893 2.7490 44 1 3.6688 7.6756 5.8441 45 1 2.4834 8.9481 6.2226 46 1 3.0145 8.6979 4.5420 47 1 2.8588 6.3846 7.9786 48 1 1.9099 4.9010 7.7198 49 1 3.1068 5.4149 6.5067 50 1 0.8552 6.5538 10.2160 51 1 1.5717 4.0551 2.8058 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972264.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:44 Heat of formation + Delta-G solvation = -0.361220 kcal Electronic energy + Delta-G solvation = -31229.484816 eV Core-core repulsion = 27130.622372 eV Total energy + Delta-G solvation = -4098.862444 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.78585 -39.81018 -38.06918 -36.44367 -35.48645 -34.46680 -32.63083 -32.05542 -31.16177 -29.87813 -29.65166 -28.62863 -25.89915 -24.69462 -24.31360 -23.89263 -22.97505 -22.39021 -21.33416 -19.50699 -19.33455 -17.86819 -17.09259 -16.83021 -16.40824 -16.27037 -16.01712 -15.26789 -14.97875 -14.76989 -14.50897 -14.32261 -14.07958 -13.81191 -13.74956 -13.50539 -13.30089 -13.07040 -12.87575 -12.73418 -12.54887 -12.42599 -12.34440 -12.08826 -11.77560 -11.63457 -11.54524 -11.36752 -11.27310 -11.19559 -10.83952 -10.77157 -10.61944 -10.36654 -10.14162 -9.98597 -9.88966 -9.87769 -9.14253 -8.97152 -8.83948 -8.50283 -8.02824 -6.67972 -5.69905 -3.24874 0.89679 1.33496 2.67148 2.79551 3.18349 3.35254 3.42706 3.46303 3.48563 3.80587 4.29558 4.50575 4.52975 4.73619 4.81320 4.85108 4.93231 5.08332 5.11646 5.13430 5.21368 5.25605 5.30994 5.38831 5.40630 5.47574 5.50088 5.53973 5.55898 5.72479 5.78093 5.85515 5.93174 5.97145 6.02038 6.20762 6.23469 6.29699 6.36455 6.37390 6.50885 6.55617 6.83453 7.00948 7.07833 7.20010 7.54469 7.71328 7.81989 7.86614 8.10886 8.42205 8.70694 9.24828 9.83788 10.35674 11.33094 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.002745 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.220071 B =10197.331777 C =11737.289621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 N -0.612 5.612 4 C 0.092 3.908 5 C -0.177 4.177 6 C 0.559 3.441 7 O -0.519 6.519 8 C -0.115 4.115 9 C -0.132 4.132 10 C -0.109 4.109 11 C -0.132 4.132 12 C 0.155 3.845 13 N -0.686 5.686 14 C 0.486 3.514 15 O -0.497 6.497 16 C 0.162 3.838 17 H 0.092 0.908 18 C -0.154 4.154 19 N -0.569 5.569 20 C 0.166 3.834 21 C -0.265 4.265 22 H 0.064 0.936 23 C 0.012 3.988 24 N -0.900 5.900 25 Si 0.908 3.092 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.282 1.282 29 C -0.070 4.070 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.139 0.861 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.408 0.592 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.043 0.957 47 H 0.031 0.969 48 H 0.036 0.964 49 H 0.007 0.993 50 H 0.254 0.746 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.513 -3.851 -26.781 27.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 N -0.346 5.346 4 C -0.031 4.031 5 C -0.235 4.235 6 C 0.347 3.653 7 O -0.395 6.395 8 C -0.118 4.118 9 C -0.151 4.151 10 C -0.128 4.128 11 C -0.153 4.153 12 C 0.060 3.940 13 N -0.334 5.334 14 C 0.272 3.728 15 O -0.367 6.367 16 C 0.048 3.952 17 H 0.110 0.890 18 C -0.213 4.213 19 N -0.289 5.289 20 C 0.022 3.978 21 C -0.394 4.394 22 H 0.082 0.918 23 C -0.188 4.188 24 N -0.544 5.544 25 Si 0.737 3.263 26 H -0.209 1.209 27 H -0.215 1.215 28 H -0.208 1.208 29 C -0.091 4.091 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.157 0.843 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.243 0.757 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.049 0.951 48 H 0.055 0.945 49 H 0.026 0.974 50 H 0.064 0.936 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.361 -5.032 -25.598 26.852 hybrid contribution -0.839 0.364 0.229 0.943 sum 5.522 -4.667 -25.369 26.379 Atomic orbital electron populations 1.22129 0.95838 1.02200 1.02516 1.21394 0.94530 0.82046 1.03005 1.47920 1.66530 1.14323 1.05837 1.21884 0.97525 0.98674 0.84995 1.22352 0.97776 1.02127 1.01281 1.18485 0.77577 0.85825 0.83382 1.90844 1.50676 1.67079 1.30857 1.19687 1.00202 0.93648 0.98296 1.21747 0.97362 0.97362 0.98632 1.20817 0.99960 0.92943 0.99068 1.21115 0.96207 1.00703 0.97277 1.17796 0.94354 0.90581 0.91281 1.44164 1.66856 1.10720 1.11640 1.23344 0.75306 0.92422 0.81697 1.90695 1.48663 1.19037 1.78340 1.20265 0.97518 0.90120 0.87338 0.89014 1.22237 0.99040 0.99401 1.00647 1.43588 1.10958 1.55410 1.18896 1.20782 0.89689 0.94258 0.93106 1.19093 0.83833 1.46816 0.89685 0.91797 1.25160 0.97200 1.00029 0.96363 1.70034 1.27664 1.53548 1.03110 0.86297 0.83872 0.78132 0.77962 1.20897 1.21528 1.20792 1.21396 0.99611 0.91667 0.96394 0.91617 0.91911 0.92696 0.90640 0.89831 0.90765 0.88564 0.91041 0.91536 0.92095 0.84339 0.85378 0.85416 0.75671 0.92836 0.91145 0.93831 0.95060 0.94497 0.97443 0.93570 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 10.24 37.16 0.38 -1.17 16 2 C 0.11 1.07 6.06 -4.04 -0.02 1.04 16 3 N -0.61 -6.62 2.50 -174.79 -0.44 -7.06 16 4 C 0.09 0.66 5.58 -4.04 -0.02 0.64 16 5 C -0.18 -0.94 8.91 37.16 0.33 -0.61 16 6 C 0.56 8.51 7.34 -12.32 -0.09 8.42 16 7 O -0.52 -10.33 16.51 5.32 0.09 -10.25 16 8 C -0.11 -1.64 5.14 -104.99 -0.54 -2.18 16 9 C -0.13 -1.39 7.41 -39.16 -0.29 -1.68 16 10 C -0.11 -1.02 10.02 -39.67 -0.40 -1.42 16 11 C -0.13 -1.43 9.96 -39.31 -0.39 -1.82 16 12 C 0.16 2.24 6.28 -83.74 -0.53 1.71 16 13 N -0.69 -9.94 5.20 -9.89 -0.05 -9.99 16 14 C 0.49 9.50 6.69 -10.98 -0.07 9.43 16 15 O -0.50 -11.98 12.10 5.55 0.07 -11.91 16 16 C 0.16 3.28 3.12 -69.08 -0.22 3.06 16 17 H 0.09 1.73 7.89 -51.93 -0.41 1.32 16 18 C -0.15 -2.63 9.09 37.16 0.34 -2.29 16 19 N -0.57 -14.85 2.57 -174.81 -0.45 -15.30 16 20 C 0.17 4.48 7.48 59.85 0.45 4.92 16 21 C -0.26 -7.48 9.51 -15.06 -0.14 -7.62 16 22 H 0.06 1.75 7.84 -52.49 -0.41 1.34 16 23 C 0.01 0.34 5.21 -17.43 -0.09 0.25 16 24 N -0.90 -26.80 10.83 55.49 0.60 -26.20 16 25 Si 0.91 22.33 29.56 -169.99 -5.02 17.31 16 26 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 C -0.07 -1.17 8.27 -38.98 -0.32 -1.49 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.50 7.68 -51.93 -0.40 0.10 16 34 H 0.08 0.95 7.46 -51.93 -0.39 0.56 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.10 0.73 5.01 -51.93 -0.26 0.47 16 37 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.42 6.44 -51.93 -0.33 0.09 16 39 H 0.06 0.29 7.83 -51.93 -0.41 -0.11 16 40 H 0.14 1.12 3.48 -52.49 -0.18 0.93 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.41 4.33 8.35 -40.82 -0.34 3.99 16 44 H 0.05 0.98 7.67 -51.93 -0.40 0.58 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 46 H 0.04 0.55 7.65 -51.93 -0.40 0.15 16 47 H 0.03 0.88 7.22 -51.93 -0.37 0.50 16 48 H 0.04 1.09 7.64 -51.93 -0.40 0.69 16 49 H 0.01 0.18 6.43 -51.93 -0.33 -0.15 16 50 H 0.25 7.32 8.31 -40.82 -0.34 6.99 16 51 H 0.15 3.06 6.28 -52.49 -0.33 2.73 16 LS Contribution 405.06 15.07 6.10 6.10 Total: -1.00 -36.82 405.06 -8.61 -45.43 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.88 Total: 2.66 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -1.63 Total: 9.21 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: -0.34 Total: -58.55 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: 0.16 Total: -22.16 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.82 -8.61 -45.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972264.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.070 kcal (2) G-P(sol) polarization free energy of solvation -36.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds