Wall clock time and date at job start Wed Apr 1 2020 05:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.47139 * 2 1 4 4 C 1.46904 * 111.00229 * 301.03134 * 3 2 1 5 5 C 1.50696 * 109.46600 * 288.95566 * 4 3 2 6 6 H 1.07998 * 120.00391 * 4.98930 * 5 4 3 7 7 C 1.37886 * 119.99584 * 184.99121 * 5 4 3 8 8 N 1.31513 * 119.99419 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00100 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47335 * 89.99547 * 9 7 5 11 11 H 1.48498 * 109.47203 * 209.99857 * 9 7 5 12 12 H 1.48501 * 109.46997 * 329.99866 * 9 7 5 13 13 C 1.46909 * 110.99974 * 64.98422 * 3 2 1 14 14 C 1.50702 * 109.47061 * 66.04510 * 13 3 2 15 15 O 1.21276 * 120.00087 * 0.02562 * 14 13 3 16 16 N 1.34779 * 119.99608 * 180.02562 * 14 13 3 17 17 C 1.39287 * 119.99606 * 185.58836 * 16 14 13 18 18 C 1.38854 * 120.16441 * 25.22185 * 17 16 14 19 19 C 1.38021 * 120.06986 * 180.02562 * 18 17 16 20 20 C 1.38565 * 120.40586 * 359.97438 * 19 18 17 21 21 C 1.37802 * 120.32786 * 359.97438 * 20 19 18 22 22 C 1.39686 * 119.92180 * 0.02562 * 21 20 19 23 23 C 1.47521 * 120.19774 * 179.97438 * 22 21 20 24 24 O 1.21589 * 120.00333 * 185.29401 * 23 22 21 25 25 N 1.34778 * 120.00080 * 5.29461 * 23 22 21 26 26 C 1.46495 * 120.00255 * 179.97438 * 25 23 22 27 27 C 1.52998 * 109.47261 * 85.00094 * 26 25 23 28 28 C 1.53000 * 109.47170 * 205.00378 * 26 25 23 29 29 H 1.08999 * 109.47695 * 305.04284 * 1 2 3 30 30 H 1.09003 * 109.47122 * 65.03881 * 1 2 3 31 31 H 1.09001 * 109.47231 * 185.03932 * 1 2 3 32 32 H 1.08998 * 109.47206 * 240.00268 * 2 1 3 33 33 H 1.09005 * 109.47341 * 119.99820 * 2 1 3 34 34 H 1.09001 * 109.46784 * 48.95604 * 4 3 2 35 35 H 1.08998 * 109.47090 * 168.95430 * 4 3 2 36 36 H 0.97006 * 119.99630 * 180.02562 * 8 7 5 37 37 H 1.09007 * 109.46880 * 306.04693 * 13 3 2 38 38 H 1.09002 * 109.46864 * 186.04970 * 13 3 2 39 39 H 0.96994 * 120.00286 * 5.59587 * 16 14 13 40 40 H 1.07999 * 119.96504 * 359.97438 * 18 17 16 41 41 H 1.07995 * 119.79802 * 180.02562 * 19 18 17 42 42 H 1.07996 * 119.83519 * 180.02562 * 20 19 18 43 43 H 1.08005 * 120.03875 * 179.72578 * 21 20 19 44 44 H 0.97001 * 119.99942 * 0.02562 * 25 23 22 45 45 H 1.09006 * 109.47195 * 324.99854 * 26 25 23 46 46 H 1.09000 * 109.47280 * 60.00198 * 27 26 25 47 47 H 1.09000 * 109.47027 * 180.02562 * 27 26 25 48 48 H 1.08997 * 109.47183 * 300.00219 * 27 26 25 49 49 H 1.08995 * 109.47802 * 60.00066 * 28 26 25 50 50 H 1.09004 * 109.47099 * 180.02562 * 28 26 25 51 51 H 1.09000 * 109.46949 * 299.99543 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5286 2.1170 -1.1752 5 6 2.2223 1.6057 -2.4114 6 1 2.8941 0.7628 -2.3440 7 6 1.9992 2.2140 -3.6285 8 7 2.6051 1.7680 -4.7072 9 14 0.8378 3.6724 -3.7449 10 1 1.5997 4.9299 -3.5363 11 1 0.2040 3.6945 -5.0876 12 1 -0.2136 3.5521 -2.7031 13 6 1.6483 2.0747 1.2429 14 6 2.3688 1.4396 2.4042 15 8 3.1181 0.5050 2.2152 16 7 2.1803 1.9105 3.6530 17 6 2.9320 1.4022 4.7097 18 6 4.1785 0.8388 4.4716 19 6 4.9215 0.3352 5.5201 20 6 4.4321 0.3878 6.8153 21 6 3.1975 0.9443 7.0706 22 6 2.4340 1.4580 6.0197 23 6 1.1114 2.0546 6.2861 24 8 0.4086 2.4129 5.3608 25 7 0.6819 2.2024 7.5550 26 6 -0.6313 2.7954 7.8195 27 6 -1.7068 1.7103 7.7373 28 6 -0.6384 3.4156 9.2181 29 1 -0.3634 0.5900 0.8413 30 1 -0.3633 0.4337 -0.9317 31 1 -0.3634 -1.0237 0.0903 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.4534 1.9671 -1.2735 35 1 1.7376 3.1800 -1.0546 36 1 2.4485 2.1962 -5.5635 37 1 0.5719 1.9945 1.3952 38 1 1.9280 3.1258 1.1725 39 1 1.5211 2.6032 3.8158 40 1 4.5667 0.7937 3.4648 41 1 5.8907 -0.1017 5.3299 42 1 5.0214 -0.0086 7.6289 43 1 2.8186 0.9788 8.0815 44 1 1.2427 1.9169 8.2932 45 1 -0.8371 3.5679 7.0785 46 1 -1.5010 0.9379 8.4783 47 1 -2.6839 2.1516 7.9336 48 1 -1.7016 1.2685 6.7409 49 1 0.1277 4.1887 9.2768 50 1 -1.6157 3.8564 9.4151 51 1 -0.4327 2.6432 9.9592 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081514164.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:30 Heat of formation + Delta-G solvation = -25.335882 kcal Electronic energy + Delta-G solvation = -30877.201783 eV Core-core repulsion = 26777.256356 eV Total energy + Delta-G solvation = -4099.945426 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.10804 -39.79344 -38.40998 -36.79113 -36.39549 -34.58147 -32.62145 -32.47458 -30.60000 -30.49076 -29.56548 -28.37320 -27.67590 -25.51446 -24.32486 -23.16366 -22.77459 -21.61144 -21.03671 -20.31035 -19.25742 -18.21438 -17.42046 -16.89740 -16.70372 -16.55814 -15.76653 -15.40895 -15.36591 -14.90836 -14.82489 -14.58321 -14.44622 -14.24211 -13.96845 -13.57702 -13.53445 -13.29047 -13.05528 -12.79739 -12.74324 -12.55518 -12.44578 -12.27783 -11.97762 -11.83598 -11.79431 -11.61246 -11.41259 -11.39787 -10.99397 -10.66731 -10.63629 -10.51819 -10.12867 -10.06690 -9.86738 -9.57492 -9.37355 -9.22298 -9.06886 -8.52199 -8.15340 -7.30013 -6.00233 -3.96646 0.60970 1.15916 2.60229 2.75708 2.79914 3.09257 3.30485 3.38146 3.39026 3.71321 4.27830 4.45041 4.46379 4.52598 4.60500 4.76775 4.78508 4.82070 4.95448 5.09617 5.11667 5.23091 5.26090 5.32107 5.32790 5.39337 5.48158 5.58932 5.62328 5.65333 5.67950 5.84247 5.86009 5.97325 5.98195 6.03496 6.11067 6.14598 6.29854 6.36391 6.45872 6.53186 6.83376 6.88688 6.97818 7.08184 7.10043 7.47800 7.63404 7.86278 7.92328 8.03350 8.33683 8.70100 9.10934 9.60968 11.13101 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013126 B = 0.002561 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.586800 B =10930.441242 C =12273.659663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.054 3.946 3 N -0.506 5.506 4 C 0.158 3.842 5 C -0.502 4.502 6 H 0.082 0.918 7 C 0.067 3.933 8 N -0.900 5.900 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.031 3.969 14 C 0.515 3.485 15 O -0.494 6.494 16 N -0.667 5.667 17 C 0.229 3.771 18 C -0.146 4.146 19 C -0.066 4.066 20 C -0.158 4.158 21 C -0.065 4.065 22 C -0.192 4.192 23 C 0.569 3.431 24 O -0.543 6.543 25 N -0.722 5.722 26 C 0.136 3.864 27 C -0.165 4.165 28 C -0.161 4.161 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.073 0.927 34 H -0.001 1.001 35 H 0.022 0.978 36 H 0.263 0.737 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.423 0.577 40 H 0.157 0.843 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.399 0.601 45 H 0.090 0.910 46 H 0.056 0.944 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.073 0.927 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.641 1.349 32.549 32.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.074 4.074 3 N -0.229 5.229 4 C 0.033 3.967 5 C -0.541 4.541 6 H 0.100 0.900 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.101 4.101 14 C 0.304 3.696 15 O -0.367 6.367 16 N -0.317 5.317 17 C 0.129 3.871 18 C -0.166 4.166 19 C -0.085 4.085 20 C -0.177 4.177 21 C -0.084 4.084 22 C -0.198 4.198 23 C 0.359 3.641 24 O -0.422 6.422 25 N -0.375 5.375 26 C 0.031 3.969 27 C -0.223 4.223 28 C -0.219 4.219 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.016 0.984 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.267 0.733 40 H 0.174 0.826 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.235 0.765 45 H 0.109 0.891 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.092 0.908 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.168 1.031 31.407 31.583 hybrid contribution -1.586 1.021 0.405 1.929 sum -4.755 2.053 31.811 32.230 Atomic orbital electron populations 1.22435 0.99787 1.01072 1.01682 1.22169 0.91403 0.90537 1.03287 1.61989 1.59278 1.02101 0.99556 1.20292 0.94306 0.93470 0.88665 1.20988 1.26707 1.16944 0.89440 0.90043 1.24888 0.95784 0.96999 0.95708 1.69895 1.43247 1.41626 0.99193 0.86893 0.81799 0.83726 0.77502 1.20192 1.21256 1.19323 1.22023 0.98015 0.99611 0.90453 1.21213 0.82074 0.83105 0.83241 1.90616 1.35536 1.26441 1.84107 1.44166 1.40304 1.41140 1.06072 1.17820 0.90218 0.92853 0.86198 1.21601 0.92480 1.00638 1.01919 1.21302 0.99318 0.95777 0.92084 1.20989 0.96570 1.02961 0.97183 1.20980 0.94208 0.95994 0.97213 1.19530 0.96170 1.10515 0.93575 1.18171 0.85487 0.77617 0.82831 1.90589 1.57263 1.51083 1.43230 1.45976 1.19753 1.64110 1.07614 1.20976 0.82229 0.95823 0.97823 1.22196 0.98386 0.98939 1.02790 1.22083 1.03214 1.01146 0.95407 0.93943 0.91549 0.93029 0.89630 0.90857 0.98384 0.96007 0.92723 0.91993 0.88077 0.73300 0.82569 0.85191 0.85550 0.85809 0.76518 0.89150 0.92500 0.91527 0.91869 0.91872 0.90767 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.51 9.22 37.15 0.34 -3.17 16 2 C 0.05 1.12 5.55 -3.83 -0.02 1.10 16 3 N -0.51 -11.05 4.40 -237.50 -1.05 -12.10 16 4 C 0.16 3.86 3.61 -4.98 -0.02 3.84 16 5 C -0.50 -14.49 9.23 -34.44 -0.32 -14.80 16 6 H 0.08 2.59 7.51 -52.49 -0.39 2.20 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 9 Si 0.87 21.58 27.37 -169.99 -4.65 16.93 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.34 6.69 56.52 0.38 -5.96 16 13 C 0.03 0.54 5.28 -4.97 -0.03 0.51 16 14 C 0.52 8.81 7.31 -10.98 -0.08 8.73 16 15 O -0.49 -9.66 11.52 5.56 0.06 -9.60 16 16 N -0.67 -9.70 4.86 -9.69 -0.05 -9.75 16 17 C 0.23 3.10 6.43 -83.48 -0.54 2.57 16 18 C -0.15 -1.94 8.70 -39.43 -0.34 -2.28 16 19 C -0.07 -0.66 10.03 -39.54 -0.40 -1.06 16 20 C -0.16 -1.28 10.02 -39.62 -0.40 -1.68 16 21 C -0.06 -0.52 9.52 -39.20 -0.37 -0.90 16 22 C -0.19 -2.11 5.89 -104.81 -0.62 -2.73 16 23 C 0.57 6.22 7.71 -12.48 -0.10 6.12 16 24 O -0.54 -7.46 13.47 5.29 0.07 -7.38 16 25 N -0.72 -5.26 5.03 -54.85 -0.28 -5.54 16 26 C 0.14 0.91 3.18 -67.93 -0.22 0.69 16 27 C -0.16 -1.13 9.48 37.16 0.35 -0.78 16 28 C -0.16 -0.64 9.38 37.16 0.35 -0.29 16 29 H 0.04 0.72 6.18 -51.93 -0.32 0.40 16 30 H 0.07 1.32 6.43 -51.93 -0.33 0.99 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.96 7.14 -51.93 -0.37 1.59 16 33 H 0.07 1.50 5.81 -51.93 -0.30 1.20 16 34 H 0.00 -0.03 5.26 -51.93 -0.27 -0.31 16 35 H 0.02 0.52 6.98 -51.93 -0.36 0.16 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.06 1.02 6.08 -51.92 -0.32 0.71 16 38 H 0.10 1.63 7.87 -51.93 -0.41 1.22 16 39 H 0.42 5.82 6.01 -40.82 -0.25 5.58 16 40 H 0.16 2.41 5.81 -52.49 -0.31 2.11 16 41 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 43 H 0.12 0.56 6.44 -52.48 -0.34 0.23 16 44 H 0.40 1.85 6.66 -40.82 -0.27 1.58 16 45 H 0.09 0.76 7.58 -51.93 -0.39 0.37 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 50 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 51 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 LS Contribution 400.72 15.07 6.04 6.04 Total: -1.00 -34.49 400.72 -9.17 -43.66 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.60 Total: 7.14 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.49 Total: -2.24 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.59 Total: -54.54 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: 0.14 Total: -16.99 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.65 Total: 16.93 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.49 -9.17 -43.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514164.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.322 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds