Wall clock time and date at job start Wed Apr 1 2020 05:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.47139 * 2 1 4 4 C 1.46904 * 111.00229 * 301.03134 * 3 2 1 5 5 C 1.50696 * 109.46600 * 288.95566 * 4 3 2 6 6 H 1.07998 * 120.00391 * 4.98930 * 5 4 3 7 7 C 1.37886 * 119.99584 * 184.99121 * 5 4 3 8 8 N 1.31513 * 119.99419 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00100 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47335 * 89.99547 * 9 7 5 11 11 H 1.48498 * 109.47203 * 209.99857 * 9 7 5 12 12 H 1.48501 * 109.46997 * 329.99866 * 9 7 5 13 13 C 1.46909 * 110.99974 * 64.98422 * 3 2 1 14 14 C 1.50702 * 109.47061 * 66.04510 * 13 3 2 15 15 O 1.21276 * 120.00087 * 0.02562 * 14 13 3 16 16 N 1.34779 * 119.99608 * 180.02562 * 14 13 3 17 17 C 1.39287 * 119.99606 * 185.58836 * 16 14 13 18 18 C 1.38854 * 120.16441 * 25.22185 * 17 16 14 19 19 C 1.38021 * 120.06986 * 180.02562 * 18 17 16 20 20 C 1.38565 * 120.40586 * 359.97438 * 19 18 17 21 21 C 1.37802 * 120.32786 * 359.97438 * 20 19 18 22 22 C 1.39686 * 119.92180 * 0.02562 * 21 20 19 23 23 C 1.47521 * 120.19774 * 179.97438 * 22 21 20 24 24 O 1.21589 * 120.00333 * 185.29401 * 23 22 21 25 25 N 1.34778 * 120.00080 * 5.29461 * 23 22 21 26 26 C 1.46495 * 120.00255 * 179.97438 * 25 23 22 27 27 C 1.52998 * 109.47261 * 85.00094 * 26 25 23 28 28 C 1.53000 * 109.47170 * 205.00378 * 26 25 23 29 29 H 1.08999 * 109.47695 * 305.04284 * 1 2 3 30 30 H 1.09003 * 109.47122 * 65.03881 * 1 2 3 31 31 H 1.09001 * 109.47231 * 185.03932 * 1 2 3 32 32 H 1.08998 * 109.47206 * 240.00268 * 2 1 3 33 33 H 1.09005 * 109.47341 * 119.99820 * 2 1 3 34 34 H 1.09001 * 109.46784 * 48.95604 * 4 3 2 35 35 H 1.08998 * 109.47090 * 168.95430 * 4 3 2 36 36 H 0.97006 * 119.99630 * 180.02562 * 8 7 5 37 37 H 1.09007 * 109.46880 * 306.04693 * 13 3 2 38 38 H 1.09002 * 109.46864 * 186.04970 * 13 3 2 39 39 H 0.96994 * 120.00286 * 5.59587 * 16 14 13 40 40 H 1.07999 * 119.96504 * 359.97438 * 18 17 16 41 41 H 1.07995 * 119.79802 * 180.02562 * 19 18 17 42 42 H 1.07996 * 119.83519 * 180.02562 * 20 19 18 43 43 H 1.08005 * 120.03875 * 179.72578 * 21 20 19 44 44 H 0.97001 * 119.99942 * 0.02562 * 25 23 22 45 45 H 1.09006 * 109.47195 * 324.99854 * 26 25 23 46 46 H 1.09000 * 109.47280 * 60.00198 * 27 26 25 47 47 H 1.09000 * 109.47027 * 180.02562 * 27 26 25 48 48 H 1.08997 * 109.47183 * 300.00219 * 27 26 25 49 49 H 1.08995 * 109.47802 * 60.00066 * 28 26 25 50 50 H 1.09004 * 109.47099 * 180.02562 * 28 26 25 51 51 H 1.09000 * 109.46949 * 299.99543 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5286 2.1170 -1.1752 5 6 2.2223 1.6057 -2.4114 6 1 2.8941 0.7628 -2.3440 7 6 1.9992 2.2140 -3.6285 8 7 2.6051 1.7680 -4.7072 9 14 0.8378 3.6724 -3.7449 10 1 1.5997 4.9299 -3.5363 11 1 0.2040 3.6945 -5.0876 12 1 -0.2136 3.5521 -2.7031 13 6 1.6483 2.0747 1.2429 14 6 2.3688 1.4396 2.4042 15 8 3.1181 0.5050 2.2152 16 7 2.1803 1.9105 3.6530 17 6 2.9320 1.4022 4.7097 18 6 4.1785 0.8388 4.4716 19 6 4.9215 0.3352 5.5201 20 6 4.4321 0.3878 6.8153 21 6 3.1975 0.9443 7.0706 22 6 2.4340 1.4580 6.0197 23 6 1.1114 2.0546 6.2861 24 8 0.4086 2.4129 5.3608 25 7 0.6819 2.2024 7.5550 26 6 -0.6313 2.7954 7.8195 27 6 -1.7068 1.7103 7.7373 28 6 -0.6384 3.4156 9.2181 29 1 -0.3634 0.5900 0.8413 30 1 -0.3633 0.4337 -0.9317 31 1 -0.3634 -1.0237 0.0903 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.4534 1.9671 -1.2735 35 1 1.7376 3.1800 -1.0546 36 1 2.4485 2.1962 -5.5635 37 1 0.5719 1.9945 1.3952 38 1 1.9280 3.1258 1.1725 39 1 1.5211 2.6032 3.8158 40 1 4.5667 0.7937 3.4648 41 1 5.8907 -0.1017 5.3299 42 1 5.0214 -0.0086 7.6289 43 1 2.8186 0.9788 8.0815 44 1 1.2427 1.9169 8.2932 45 1 -0.8371 3.5679 7.0785 46 1 -1.5010 0.9379 8.4783 47 1 -2.6839 2.1516 7.9336 48 1 -1.7016 1.2685 6.7409 49 1 0.1277 4.1887 9.2768 50 1 -1.6157 3.8564 9.4151 51 1 -0.4327 2.6432 9.9592 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081514164.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:29 Heat of formation + Delta-G solvation = -50.461822 kcal Electronic energy + Delta-G solvation = -30878.291325 eV Core-core repulsion = 26777.256356 eV Total energy + Delta-G solvation = -4101.034969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.09246 -40.85276 -39.39975 -38.29177 -37.12171 -35.69619 -34.68314 -33.33860 -31.77252 -31.28744 -31.15614 -29.93883 -28.09259 -27.11453 -25.13056 -24.76449 -24.01380 -22.38142 -21.91898 -21.51510 -20.77422 -19.04418 -18.90031 -18.29798 -18.10254 -17.36043 -17.16803 -16.48605 -16.41483 -16.12389 -16.01012 -15.89434 -15.59651 -15.25096 -15.03485 -14.80232 -14.62278 -14.49143 -14.37734 -13.94904 -13.69761 -13.59101 -13.31761 -13.20910 -13.06686 -13.04591 -12.94812 -12.73705 -12.62004 -12.49210 -12.32847 -12.29714 -11.92716 -11.90139 -11.72036 -11.54830 -11.48681 -11.00914 -10.75859 -10.59862 -10.29116 -9.91491 -9.12824 -8.97639 -8.26085 -6.29238 -0.21955 0.31620 1.35851 1.37786 1.48513 1.55083 1.79137 1.94813 2.10041 2.35907 2.87883 3.05626 3.24439 3.64684 3.65574 3.81042 3.97982 4.11659 4.13358 4.15251 4.16600 4.31210 4.32144 4.39695 4.42630 4.44266 4.48957 4.58038 4.68359 4.74318 4.75732 4.87420 4.90588 4.94502 5.02615 5.03565 5.13351 5.18508 5.27616 5.28875 5.33698 5.36255 5.45801 5.50744 5.54032 5.55468 5.93867 5.96838 6.24953 6.38694 6.50265 6.63218 6.76151 7.03882 7.19082 7.32979 8.91188 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013126 B = 0.002561 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.586800 B =10930.441242 C =12273.659663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.060 3.940 3 N -0.529 5.529 4 C 0.169 3.831 5 C -0.512 4.512 6 H 0.030 0.970 7 C 0.005 3.995 8 N -0.951 5.951 9 Si 0.950 3.050 10 H -0.264 1.264 11 H -0.283 1.283 12 H -0.246 1.246 13 C 0.031 3.969 14 C 0.516 3.484 15 O -0.529 6.529 16 N -0.657 5.657 17 C 0.192 3.808 18 C -0.172 4.172 19 C -0.068 4.068 20 C -0.144 4.144 21 C -0.052 4.052 22 C -0.194 4.194 23 C 0.564 3.436 24 O -0.578 6.578 25 N -0.704 5.704 26 C 0.132 3.868 27 C -0.161 4.161 28 C -0.153 4.153 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.007 0.993 35 H 0.033 0.967 36 H 0.266 0.734 37 H 0.081 0.919 38 H 0.117 0.883 39 H 0.426 0.574 40 H 0.124 0.876 41 H 0.147 0.853 42 H 0.167 0.833 43 H 0.168 0.832 44 H 0.415 0.585 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.031 0.969 49 H 0.065 0.935 50 H 0.082 0.918 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.113 2.629 37.284 37.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.068 4.068 3 N -0.253 5.253 4 C 0.043 3.957 5 C -0.551 4.551 6 H 0.048 0.952 7 C -0.192 4.192 8 N -0.592 5.592 9 Si 0.773 3.227 10 H -0.189 1.189 11 H -0.209 1.209 12 H -0.169 1.169 13 C -0.100 4.100 14 C 0.305 3.695 15 O -0.405 6.405 16 N -0.307 5.307 17 C 0.094 3.906 18 C -0.192 4.192 19 C -0.087 4.087 20 C -0.162 4.162 21 C -0.071 4.071 22 C -0.200 4.200 23 C 0.353 3.647 24 O -0.460 6.460 25 N -0.356 5.356 26 C 0.028 3.972 27 C -0.220 4.220 28 C -0.210 4.210 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.025 0.975 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.135 0.865 39 H 0.270 0.730 40 H 0.141 0.859 41 H 0.165 0.835 42 H 0.185 0.815 43 H 0.186 0.814 44 H 0.253 0.747 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.097 0.903 48 H 0.050 0.950 49 H 0.084 0.916 50 H 0.101 0.899 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.636 2.311 36.247 36.616 hybrid contribution -1.012 0.512 -0.887 1.439 sum -5.648 2.823 35.361 35.920 Atomic orbital electron populations 1.22311 0.97443 1.02632 1.01493 1.22012 0.93275 0.90008 1.01525 1.61767 1.60377 1.02554 1.00609 1.20050 0.93995 0.93844 0.87817 1.21195 1.26198 1.15674 0.92003 0.95211 1.25884 0.97778 1.00551 0.94942 1.70069 1.45380 1.43686 1.00036 0.85674 0.79641 0.79231 0.78154 1.18916 1.20861 1.16916 1.22071 0.99164 0.99980 0.88756 1.21043 0.81658 0.82782 0.84020 1.90611 1.37113 1.28054 1.84722 1.43926 1.40234 1.40999 1.05578 1.18080 0.90703 0.94896 0.86925 1.21452 0.93425 1.02790 1.01543 1.21584 0.99738 0.95017 0.92370 1.21454 0.96561 1.01112 0.97080 1.21492 0.93591 0.93746 0.98292 1.19708 0.96624 1.10507 0.93203 1.18273 0.85316 0.77530 0.83582 1.90563 1.58142 1.52728 1.44540 1.45872 1.20067 1.62824 1.06823 1.21071 0.81691 0.95311 0.99089 1.22166 0.99239 0.99269 1.01286 1.22033 1.03922 1.01512 0.93545 0.92145 0.93084 0.91045 0.93231 0.90700 0.97518 0.94910 0.92476 0.90178 0.86488 0.72958 0.85858 0.83493 0.81538 0.81425 0.74656 0.91300 0.91134 0.90309 0.94969 0.91603 0.89912 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.59 9.22 71.98 0.66 -5.93 16 2 C 0.06 2.60 5.55 86.30 0.48 3.08 16 3 N -0.53 -23.87 4.40 -905.33 -3.98 -27.85 16 4 C 0.17 8.33 3.61 85.56 0.31 8.64 16 5 C -0.51 -30.89 9.23 25.60 0.24 -30.65 16 6 H 0.03 2.04 7.51 -2.91 -0.02 2.02 16 7 C 0.01 0.31 5.47 84.66 0.46 0.77 16 8 N -0.95 -61.30 13.96 21.45 0.30 -61.00 16 9 Si 0.95 44.63 27.37 68.60 1.88 46.51 16 10 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.25 -10.58 6.69 99.48 0.67 -9.91 16 13 C 0.03 1.11 5.28 85.56 0.45 1.56 16 14 C 0.52 18.34 7.31 87.66 0.64 18.98 16 15 O -0.53 -22.01 11.52 -3.02 -0.03 -22.05 16 16 N -0.66 -19.66 4.86 -302.95 -1.47 -21.13 16 17 C 0.19 5.26 6.43 38.60 0.25 5.51 16 18 C -0.17 -4.70 8.70 22.37 0.19 -4.50 16 19 C -0.07 -1.28 10.03 22.30 0.22 -1.05 16 20 C -0.14 -1.76 10.02 22.24 0.22 -1.54 16 21 C -0.05 -0.64 9.52 22.52 0.21 -0.43 16 22 C -0.19 -3.98 5.89 -19.99 -0.12 -4.09 16 23 C 0.56 11.53 7.71 86.69 0.67 12.20 16 24 O -0.58 -15.81 13.47 -4.00 -0.05 -15.86 16 25 N -0.70 -8.36 5.03 -445.72 -2.24 -10.60 16 26 C 0.13 1.49 3.18 44.99 0.14 1.63 16 27 C -0.16 -1.92 9.48 71.98 0.68 -1.23 16 28 C -0.15 -0.69 9.38 71.98 0.68 -0.02 16 29 H 0.06 1.98 6.18 -2.39 -0.01 1.97 16 30 H 0.05 2.02 6.43 -2.39 -0.02 2.00 16 31 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.05 2.46 7.14 -2.39 -0.02 2.44 16 33 H 0.07 3.22 5.81 -2.38 -0.01 3.21 16 34 H 0.01 0.34 5.26 -2.39 -0.01 0.33 16 35 H 0.03 1.54 6.98 -2.39 -0.02 1.53 16 36 H 0.27 15.95 8.31 -92.70 -0.77 15.18 16 37 H 0.08 2.56 6.08 -2.38 -0.01 2.54 16 38 H 0.12 3.72 7.87 -2.39 -0.02 3.71 16 39 H 0.43 11.95 6.01 -92.71 -0.56 11.39 16 40 H 0.12 4.17 5.81 -2.91 -0.02 4.16 16 41 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 42 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 43 H 0.17 0.52 6.44 -2.91 -0.02 0.50 16 44 H 0.41 2.07 6.66 -92.71 -0.62 1.45 16 45 H 0.07 1.10 7.58 -2.38 -0.02 1.08 16 46 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 47 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 50 H 0.08 0.28 8.14 -2.38 -0.02 0.26 16 51 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -81.83 400.72 0.54 -81.29 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: -0.25 Total: 27.77 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 6.40 Total: 2.92 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -7.40 Total: -120.59 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.09 Total: -37.91 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.51 kcal Total: -81.83 0.54 -81.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514164.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.823 kcal (2) G-P(sol) polarization free energy of solvation -81.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds