Wall clock time and date at job start Wed Apr 1 2020 05:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.46543 * 2 1 4 4 C 1.46501 * 119.99491 * 269.99612 * 3 2 1 5 5 C 1.50701 * 109.47468 * 270.00352 * 4 3 2 6 6 H 1.08006 * 119.99658 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00369 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00309 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99784 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46832 * 90.00201 * 9 7 5 11 11 H 1.48495 * 109.47114 * 210.00552 * 9 7 5 12 12 H 1.48504 * 109.47092 * 330.00650 * 9 7 5 13 13 C 1.34774 * 120.00187 * 90.00555 * 3 2 1 14 14 O 1.21282 * 119.99897 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99799 * 359.97438 * 13 3 2 16 16 N 1.46501 * 109.46659 * 180.02562 * 15 13 3 17 17 C 1.39674 * 119.99643 * 179.97438 * 16 15 13 18 18 C 1.38984 * 120.03957 * 359.95311 * 17 16 15 19 19 C 1.38135 * 120.06479 * 179.97438 * 18 17 16 20 20 C 1.38188 * 120.14311 * 0.04991 * 19 18 17 21 21 C 1.38912 * 120.07868 * 359.97438 * 20 19 18 22 22 N 1.39918 * 120.03108 * 179.97438 * 21 20 19 23 23 C 1.34773 * 120.00195 * 324.88501 * 22 21 20 24 24 O 1.21283 * 120.00298 * 4.62696 * 23 22 21 25 25 C 1.50701 * 119.99838 * 184.62642 * 23 22 21 26 26 C 1.52997 * 109.47453 * 60.00136 * 25 23 22 27 27 C 1.53006 * 109.47106 * 180.02562 * 25 23 22 28 28 C 1.38758 * 119.93323 * 359.97438 * 21 20 19 29 29 H 1.09002 * 109.47193 * 299.99682 * 1 2 3 30 30 H 1.08997 * 109.47289 * 60.00332 * 1 2 3 31 31 H 1.09008 * 109.46461 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47258 * 239.99905 * 2 1 3 33 33 H 1.08997 * 109.47289 * 119.99668 * 2 1 3 34 34 H 1.08998 * 109.47366 * 30.00370 * 4 3 2 35 35 H 1.09008 * 109.47023 * 150.00678 * 4 3 2 36 36 H 0.96999 * 120.00381 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.47200 * 60.00488 * 15 13 3 38 38 H 1.09004 * 109.46885 * 299.99926 * 15 13 3 39 39 H 0.96998 * 120.00696 * 359.97438 * 16 15 13 40 40 H 1.07990 * 119.96900 * 359.97438 * 18 17 16 41 41 H 1.07997 * 119.93013 * 180.02562 * 19 18 17 42 42 H 1.07997 * 119.95783 * 179.97438 * 20 19 18 43 43 H 0.96998 * 119.99685 * 144.88480 * 22 21 20 44 44 H 1.08997 * 109.47165 * 299.99435 * 25 23 22 45 45 H 1.08998 * 109.47043 * 299.99820 * 26 25 23 46 46 H 1.08997 * 109.47507 * 59.99509 * 26 25 23 47 47 H 1.08996 * 109.47243 * 179.97438 * 26 25 23 48 48 H 1.08999 * 109.47053 * 59.99600 * 27 25 23 49 49 H 1.08996 * 109.47334 * 179.97438 * 27 25 23 50 50 H 1.08997 * 109.46529 * 299.99680 * 27 25 23 51 51 H 1.08003 * 120.07005 * 179.72743 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7039 6 1 4.3428 1.2310 -1.0958 7 6 4.1493 2.3904 -2.8776 8 7 5.3911 2.1834 -3.2575 9 14 3.0128 3.4358 -3.9289 10 1 3.1154 4.8559 -3.5072 11 1 3.4064 3.3134 -5.3555 12 1 1.6132 2.9691 -3.7597 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1600 1.1671 15 6 1.9914 1.3064 2.4723 16 7 2.3083 2.2042 3.5857 17 6 2.1522 1.7655 4.9026 18 6 1.6954 0.4779 5.1575 19 6 1.5414 0.0434 6.4597 20 6 1.8397 0.8871 7.5126 21 6 2.2962 2.1755 7.2646 22 7 2.5974 3.0291 8.3315 23 6 1.8661 2.9783 9.4624 24 8 1.0016 2.1371 9.5884 25 6 2.1225 3.9670 10.5706 26 6 1.8980 5.3876 10.0488 27 6 1.1641 3.6921 11.7312 28 6 2.4531 2.6149 5.9579 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.5816 1.6876 -2.0284 35 1 2.0954 3.1411 -1.1385 36 1 5.7172 2.5738 -4.0834 37 1 2.6214 0.4188 2.5302 38 1 0.9433 1.0125 2.5298 39 1 2.6265 3.1032 3.4085 40 1 1.4607 -0.1836 4.3368 41 1 1.1866 -0.9577 6.6552 42 1 1.7177 0.5445 8.5295 43 1 3.3327 3.6574 8.2572 44 1 3.1509 3.8655 10.9173 45 1 2.5811 5.5832 9.2222 46 1 0.8697 5.4891 9.7020 47 1 2.0831 6.1026 10.8504 48 1 1.3244 2.6800 12.1028 49 1 1.3499 4.4068 12.5329 50 1 0.1357 3.7933 11.3847 51 1 2.8037 3.6176 5.7625 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088523865.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:35 Heat of formation + Delta-G solvation = -69.204337 kcal Electronic energy + Delta-G solvation = -29747.085589 eV Core-core repulsion = 25645.237884 eV Total energy + Delta-G solvation = -4101.847705 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.65552 -41.01698 -39.77671 -37.25669 -36.67815 -35.61487 -35.03372 -34.79080 -32.07463 -31.47131 -30.36615 -29.52838 -27.97603 -27.46331 -25.20253 -24.44728 -23.96813 -23.57285 -22.16361 -20.86496 -20.07815 -19.14297 -18.94650 -18.47997 -17.72295 -17.56211 -17.01466 -16.73060 -16.57565 -16.42599 -15.96788 -15.81298 -15.25031 -15.13314 -14.73343 -14.70631 -14.63069 -14.45624 -14.31352 -14.17703 -13.84097 -13.74460 -13.51533 -13.31733 -13.25458 -13.15148 -12.88803 -12.65484 -12.56263 -12.40162 -12.23155 -12.09159 -12.06124 -12.00575 -11.93898 -11.75752 -11.54662 -10.88541 -10.84954 -10.81006 -10.62277 -9.49538 -9.24920 -8.35470 -8.35238 -6.40616 0.37919 0.69525 1.31713 1.35302 1.43636 1.58341 1.64456 1.91536 2.14537 2.29297 2.63266 2.97547 2.98984 3.49967 3.60343 3.96008 4.01767 4.04359 4.07147 4.24170 4.30548 4.37306 4.38025 4.42698 4.44619 4.60703 4.63242 4.68237 4.75627 4.75964 4.81191 4.87637 4.88849 4.93221 4.99720 5.02233 5.06587 5.25904 5.29875 5.33679 5.39496 5.41863 5.45034 5.46669 5.58569 5.69178 5.95058 6.20286 6.32735 6.44352 6.59616 6.61401 6.73550 7.13029 7.16677 7.30023 8.81364 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018807 B = 0.001882 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.419941 B =14871.821329 C =15705.678148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.094 3.906 3 N -0.593 5.593 4 C 0.225 3.775 5 C -0.536 4.536 6 H 0.030 0.970 7 C 0.011 3.989 8 N -0.944 5.944 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.238 1.238 13 C 0.494 3.506 14 O -0.589 6.589 15 C 0.120 3.880 16 N -0.739 5.739 17 C 0.228 3.772 18 C -0.217 4.217 19 C -0.055 4.055 20 C -0.197 4.197 21 C 0.180 3.820 22 N -0.664 5.664 23 C 0.510 3.490 24 O -0.558 6.558 25 C -0.106 4.106 26 C -0.144 4.144 27 C -0.133 4.133 28 C -0.230 4.230 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.051 0.949 35 H 0.019 0.981 36 H 0.268 0.732 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.403 0.597 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.122 0.878 43 H 0.424 0.576 44 H 0.127 0.873 45 H 0.071 0.929 46 H 0.047 0.953 47 H 0.090 0.910 48 H 0.051 0.949 49 H 0.087 0.913 50 H 0.045 0.955 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.357 -1.001 26.288 28.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.028 4.028 3 N -0.324 5.324 4 C 0.103 3.897 5 C -0.575 4.575 6 H 0.048 0.952 7 C -0.187 4.187 8 N -0.584 5.584 9 Si 0.769 3.231 10 H -0.203 1.203 11 H -0.201 1.201 12 H -0.161 1.161 13 C 0.282 3.718 14 O -0.470 6.470 15 C -0.007 4.007 16 N -0.371 5.371 17 C 0.124 3.876 18 C -0.240 4.240 19 C -0.075 4.075 20 C -0.220 4.220 21 C 0.085 3.915 22 N -0.310 5.310 23 C 0.300 3.700 24 O -0.436 6.436 25 C -0.127 4.127 26 C -0.202 4.202 27 C -0.191 4.191 28 C -0.255 4.255 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.068 0.932 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.133 0.867 39 H 0.240 0.760 40 H 0.158 0.842 41 H 0.163 0.837 42 H 0.140 0.860 43 H 0.262 0.738 44 H 0.144 0.856 45 H 0.090 0.910 46 H 0.066 0.934 47 H 0.109 0.891 48 H 0.070 0.930 49 H 0.106 0.894 50 H 0.064 0.936 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.707 -1.087 26.109 28.240 hybrid contribution 0.754 1.141 -1.164 1.796 sum -9.952 0.054 24.945 26.857 Atomic orbital electron populations 1.22176 0.93839 1.03845 1.02145 1.21870 0.95702 0.80786 1.04437 1.47993 1.63517 1.15307 1.05577 1.19324 0.94880 0.93059 0.82429 1.21551 0.97034 1.32146 1.06746 0.95169 1.25840 0.96683 0.97205 0.98977 1.70043 1.17399 1.46492 1.24461 0.85733 0.80510 0.78986 0.77826 1.20279 1.20080 1.16084 1.21095 0.77296 0.86673 0.86710 1.90628 1.48103 1.20542 1.87688 1.21149 1.03704 0.93192 0.82673 1.44475 1.73929 1.17111 1.01538 1.17653 0.93167 0.93317 0.83457 1.20889 1.09673 0.95216 0.98196 1.21022 0.95560 0.99698 0.91174 1.21052 1.07724 0.93052 1.00125 1.17486 0.97663 0.89757 0.86574 1.43541 1.34809 1.38979 1.13641 1.21638 0.79935 0.85078 0.83387 1.90689 1.34057 1.38565 1.80260 1.21388 1.03990 0.94302 0.93016 1.21830 1.02188 0.93460 1.02718 1.21638 0.98356 1.02268 0.96831 1.20314 1.13919 1.01015 0.90231 0.91961 0.93472 0.88566 0.90596 0.88173 0.93153 0.96327 0.92278 0.87774 0.86671 0.75989 0.84201 0.83734 0.85980 0.73760 0.85564 0.91050 0.93390 0.89136 0.92987 0.89416 0.93573 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 10.24 71.98 0.74 -2.50 16 2 C 0.09 2.50 5.93 86.38 0.51 3.01 16 3 N -0.59 -22.58 2.46 -826.14 -2.03 -24.61 16 4 C 0.23 10.63 4.23 85.63 0.36 10.99 16 5 C -0.54 -30.95 9.94 25.60 0.25 -30.70 16 6 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 7 C 0.01 0.65 5.47 84.66 0.46 1.11 16 8 N -0.94 -59.12 13.96 21.45 0.30 -58.82 16 9 Si 0.95 43.86 27.47 68.60 1.88 45.75 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 13 C 0.49 18.74 7.74 87.66 0.68 19.42 16 14 O -0.59 -27.91 15.25 -3.03 -0.05 -27.96 16 15 C 0.12 3.16 3.94 85.63 0.34 3.49 16 16 N -0.74 -20.40 5.70 -343.19 -1.96 -22.35 16 17 C 0.23 5.71 6.65 38.20 0.25 5.97 16 18 C -0.22 -4.76 9.31 22.42 0.21 -4.55 16 19 C -0.06 -1.19 10.03 22.23 0.22 -0.96 16 20 C -0.20 -4.82 8.69 22.42 0.19 -4.62 16 21 C 0.18 4.14 6.29 38.14 0.24 4.38 16 22 N -0.66 -11.33 5.19 -303.57 -1.58 -12.90 16 23 C 0.51 9.52 7.00 87.66 0.61 10.13 16 24 O -0.56 -15.03 13.42 -3.04 -0.04 -15.07 16 25 C -0.11 -1.10 3.25 -11.54 -0.04 -1.13 16 26 C -0.14 -1.11 9.10 71.98 0.65 -0.45 16 27 C -0.13 -1.55 8.48 71.98 0.61 -0.94 16 28 C -0.23 -5.41 9.81 22.52 0.22 -5.19 16 29 H 0.06 1.14 7.22 -2.39 -0.02 1.12 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.08 2.21 8.07 -2.39 -0.02 2.19 16 33 H 0.10 2.04 6.44 -2.39 -0.02 2.02 16 34 H 0.05 2.19 7.13 -2.39 -0.02 2.17 16 35 H 0.02 0.95 6.85 -2.38 -0.02 0.93 16 36 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 37 H 0.10 2.39 7.21 -2.39 -0.02 2.37 16 38 H 0.12 2.34 6.99 -2.38 -0.02 2.33 16 39 H 0.40 12.49 7.45 -92.71 -0.69 11.80 16 40 H 0.14 2.46 6.72 -2.92 -0.02 2.45 16 41 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 42 H 0.12 3.21 6.22 -2.91 -0.02 3.19 16 43 H 0.42 4.44 8.39 -92.71 -0.78 3.66 16 44 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.07 0.42 7.67 -2.39 -0.02 0.40 16 46 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 48 H 0.05 0.72 8.10 -2.39 -0.02 0.70 16 49 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 51 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -81.72 414.20 2.49 -79.23 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: -0.57 Total: 29.30 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 6.53 Total: 7.45 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -5.26 Total: -118.69 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -0.09 Total: -43.03 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.75 kcal Total: -81.72 2.49 -79.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088523865.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.026 kcal (2) G-P(sol) polarization free energy of solvation -81.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds