Wall clock time and date at job start Wed Apr 1 2020 05:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47539 * 2 1 4 4 C 1.46496 * 120.00223 * 270.00023 * 3 2 1 5 5 C 1.50697 * 109.47335 * 270.00056 * 4 3 2 6 6 H 1.07998 * 119.99876 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00362 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99555 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00168 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.46847 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47000 * 119.99527 * 9 7 5 12 12 H 1.48498 * 109.46859 * 239.99795 * 9 7 5 13 13 C 1.34775 * 120.00135 * 89.99624 * 3 2 1 14 14 O 1.21279 * 120.00300 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99773 * 0.02562 * 13 3 2 16 16 N 1.46506 * 109.47289 * 179.97438 * 15 13 3 17 17 C 1.39668 * 120.00181 * 180.02562 * 16 15 13 18 18 C 1.38907 * 120.07584 * 359.71907 * 17 16 15 19 19 C 1.38108 * 119.92754 * 179.77093 * 18 17 16 20 20 C 1.38283 * 120.07138 * 0.50866 * 19 18 17 21 21 C 1.50700 * 119.92567 * 179.72344 * 20 19 18 22 22 C 1.50699 * 109.47004 * 270.02519 * 21 20 19 23 23 O 1.21285 * 120.00459 * 359.97438 * 22 21 20 24 24 N 1.34781 * 120.00010 * 179.97438 * 22 21 20 25 25 C 1.46499 * 119.99808 * 179.97438 * 24 22 21 26 26 C 1.46503 * 120.00043 * 0.02562 * 24 22 21 27 27 C 1.38292 * 120.15211 * 359.74911 * 20 19 18 28 28 C 1.38103 * 120.06781 * 359.97438 * 27 20 19 29 29 H 1.09001 * 109.47274 * 60.00246 * 1 2 3 30 30 H 1.09005 * 109.47543 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47221 * 300.00363 * 1 2 3 32 32 H 1.09003 * 109.47221 * 239.99637 * 2 1 3 33 33 H 1.09002 * 109.46764 * 120.00327 * 2 1 3 34 34 H 1.09002 * 109.47248 * 29.99793 * 4 3 2 35 35 H 1.09004 * 109.47206 * 149.99350 * 4 3 2 36 36 H 0.97000 * 119.99408 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.47438 * 59.99564 * 15 13 3 38 38 H 1.09004 * 109.47113 * 299.99819 * 15 13 3 39 39 H 0.97001 * 119.99251 * 0.02562 * 16 15 13 40 40 H 1.08004 * 120.03686 * 0.02562 * 18 17 16 41 41 H 1.07998 * 119.96672 * 180.25929 * 19 18 17 42 42 H 1.08997 * 109.47151 * 30.02383 * 21 20 19 43 43 H 1.08997 * 109.47346 * 150.02750 * 21 20 19 44 44 H 1.08991 * 109.47454 * 60.00609 * 25 24 22 45 45 H 1.09006 * 109.46696 * 180.02562 * 25 24 22 46 46 H 1.09003 * 109.47273 * 299.99633 * 25 24 22 47 47 H 1.08995 * 109.46975 * 89.99819 * 26 24 22 48 48 H 1.08997 * 109.47095 * 210.00195 * 26 24 22 49 49 H 1.09005 * 109.46706 * 330.00065 * 26 24 22 50 50 H 1.07994 * 119.96476 * 180.02562 * 27 20 19 51 51 H 1.08003 * 120.03201 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0958 7 6 4.1495 2.3903 -2.8774 8 7 3.3495 3.1265 -3.6174 9 14 5.9140 2.0973 -3.4163 10 1 6.6015 1.2420 -2.4158 11 1 5.9219 1.4187 -4.7371 12 1 6.6212 3.3986 -3.5239 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9922 1.3059 2.4723 16 7 2.3100 2.2033 3.5859 17 6 2.1558 1.7640 4.9027 18 6 1.6956 0.4785 5.1583 19 6 1.5488 0.0457 6.4616 20 6 1.8492 0.8940 7.5114 21 6 1.6818 0.4204 8.9323 22 6 0.2864 0.7361 9.4059 23 8 -0.4951 1.2915 8.6630 24 7 -0.0932 0.4013 10.6550 25 6 -1.4495 0.7087 11.1155 26 6 0.8509 -0.2690 11.5526 27 6 2.3025 2.1763 7.2606 28 6 2.4570 2.6134 5.9597 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5818 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1383 36 1 3.6757 3.5170 -4.4433 37 1 2.6226 0.4185 2.5299 38 1 0.9443 1.0114 2.5302 39 1 2.6276 3.1025 3.4086 40 1 1.4569 -0.1832 4.3388 41 1 1.1950 -0.9550 6.6610 42 1 1.8462 -0.6561 8.9782 43 1 2.4055 0.9261 9.5715 44 1 -2.1735 0.2038 10.4762 45 1 -1.5706 0.3661 12.1432 46 1 -1.6133 1.7854 11.0703 47 1 1.4077 0.4782 12.1180 48 1 0.3032 -0.9122 12.2414 49 1 1.5443 -0.8718 10.9661 50 1 2.5366 2.8361 8.0828 51 1 2.8106 3.6150 5.7644 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088533822.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:18 Heat of formation + Delta-G solvation = -62.551655 kcal Electronic energy + Delta-G solvation = -29595.793980 eV Core-core repulsion = 25494.234756 eV Total energy + Delta-G solvation = -4101.559223 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.18345 -40.87328 -39.83979 -37.20290 -36.58216 -36.28443 -34.93216 -32.89240 -31.75154 -31.65571 -30.22283 -29.13444 -28.20848 -27.19004 -25.77219 -24.81144 -24.18733 -23.41384 -21.97964 -20.16820 -20.08620 -18.85871 -18.54836 -17.89536 -17.68513 -17.30380 -16.96824 -16.88635 -16.61471 -16.56988 -15.96414 -15.71535 -15.09150 -14.89157 -14.74664 -14.59540 -14.43298 -14.30240 -14.13677 -14.04386 -13.99318 -13.60009 -13.47867 -13.43451 -13.31909 -13.19141 -13.04076 -12.83049 -12.71262 -12.69214 -12.52213 -12.21520 -12.19811 -11.93022 -11.72297 -11.71222 -11.09880 -10.77022 -10.67330 -10.66703 -9.74900 -9.62095 -9.52588 -8.27325 -8.24734 -6.39856 0.62309 0.69676 1.34857 1.37314 1.48944 1.67197 1.71218 2.03339 2.18325 2.36635 2.64926 3.02414 3.04852 3.52301 3.82259 3.97474 4.00170 4.06083 4.19000 4.26008 4.31172 4.35941 4.42686 4.44182 4.49871 4.53195 4.59836 4.63003 4.67808 4.78541 4.85711 4.89495 4.93071 4.95971 4.96764 5.03137 5.03899 5.17852 5.19694 5.37516 5.45410 5.51707 5.54242 5.59740 5.79079 5.81941 6.00720 6.02801 6.36567 6.44668 6.64116 6.69918 6.77185 7.21563 7.26978 7.36479 8.82338 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023202 B = 0.001760 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.494634 B =15909.206852 C =16383.626558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 N -0.596 5.596 4 C 0.261 3.739 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.969 3.031 10 H -0.266 1.266 11 H -0.268 1.268 12 H -0.283 1.283 13 C 0.491 3.509 14 O -0.592 6.592 15 C 0.123 3.877 16 N -0.744 5.744 17 C 0.206 3.794 18 C -0.208 4.208 19 C -0.061 4.061 20 C -0.141 4.141 21 C -0.081 4.081 22 C 0.502 3.498 23 O -0.583 6.583 24 N -0.627 5.627 25 C 0.086 3.914 26 C 0.068 3.932 27 C -0.064 4.064 28 C -0.213 4.213 29 H 0.038 0.962 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.025 0.975 35 H -0.004 1.004 36 H 0.267 0.733 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.401 0.599 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.128 0.872 43 H 0.122 0.878 44 H 0.046 0.954 45 H 0.107 0.893 46 H 0.044 0.956 47 H 0.068 0.932 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.132 0.868 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.486 -14.368 32.400 35.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.026 4.026 3 N -0.327 5.327 4 C 0.140 3.860 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.193 1.193 12 H -0.209 1.209 13 C 0.280 3.720 14 O -0.474 6.474 15 C -0.005 4.005 16 N -0.376 5.376 17 C 0.103 3.897 18 C -0.231 4.231 19 C -0.080 4.080 20 C -0.143 4.143 21 C -0.120 4.120 22 C 0.292 3.708 23 O -0.463 6.463 24 N -0.361 5.361 25 C -0.057 4.057 26 C -0.073 4.073 27 C -0.083 4.083 28 C -0.235 4.235 29 H 0.058 0.942 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.043 0.957 35 H 0.014 0.986 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.237 0.763 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.146 0.854 43 H 0.140 0.860 44 H 0.065 0.935 45 H 0.125 0.875 46 H 0.062 0.938 47 H 0.087 0.913 48 H 0.108 0.892 49 H 0.109 0.891 50 H 0.150 0.850 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.770 -13.568 31.689 34.951 hybrid contribution 0.720 1.074 -1.150 1.730 sum -5.050 -12.494 30.539 33.380 Atomic orbital electron populations 1.22171 0.94545 1.03721 1.01636 1.21839 0.95321 0.81013 1.04431 1.48220 1.63226 1.15247 1.05966 1.18747 0.95482 0.91529 0.80228 1.21733 0.97794 1.32046 1.06581 0.92713 1.25872 1.02439 0.94446 0.96446 1.70063 1.37709 1.34168 1.14809 0.85347 0.78924 0.77965 0.78443 1.19067 1.19333 1.20897 1.21108 0.77556 0.86650 0.86720 1.90627 1.48434 1.20580 1.87716 1.21113 1.03274 0.93301 0.82807 1.44539 1.74164 1.17026 1.01832 1.18033 0.94148 0.93906 0.83621 1.20832 1.08896 0.95024 0.98353 1.20964 0.95862 0.99811 0.91335 1.19308 1.05324 0.94853 0.94838 1.20604 0.93021 1.05003 0.93398 1.21317 0.90565 0.77787 0.81164 1.90724 1.56007 1.43726 1.55797 1.48011 1.14710 1.59835 1.13528 1.21670 0.82483 1.00494 1.01040 1.22167 0.93218 0.97782 0.94141 1.20873 0.96456 0.95339 0.95584 1.20709 1.10086 1.00252 0.92478 0.94234 0.88311 0.92371 0.90420 0.87811 0.95683 0.98563 0.92410 0.87456 0.87497 0.76266 0.84781 0.84302 0.85432 0.85966 0.93518 0.87480 0.93769 0.91304 0.89165 0.89124 0.85034 0.86463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 10.24 71.98 0.74 -3.24 16 2 C 0.10 2.83 5.93 86.38 0.51 3.34 16 3 N -0.60 -25.05 2.46 -826.18 -2.03 -27.08 16 4 C 0.26 14.18 5.16 85.63 0.44 14.62 16 5 C -0.54 -31.44 9.39 25.60 0.24 -31.20 16 6 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 7 C 0.01 0.40 5.46 84.65 0.46 0.87 16 8 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 9 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 13 C 0.49 20.53 7.74 87.66 0.68 21.21 16 14 O -0.59 -30.78 15.25 -3.03 -0.05 -30.83 16 15 C 0.12 3.63 3.95 85.63 0.34 3.96 16 16 N -0.74 -23.41 5.70 -343.12 -1.96 -25.37 16 17 C 0.21 5.82 6.65 38.21 0.25 6.08 16 18 C -0.21 -5.02 9.31 22.40 0.21 -4.81 16 19 C -0.06 -1.28 9.69 22.25 0.22 -1.06 16 20 C -0.14 -2.86 4.38 -19.84 -0.09 -2.94 16 21 C -0.08 -1.00 4.38 29.10 0.13 -0.88 16 22 C 0.50 9.30 7.67 87.66 0.67 9.97 16 23 O -0.58 -17.27 16.03 -3.04 -0.05 -17.32 16 24 N -0.63 -7.45 3.27 -871.88 -2.85 -10.31 16 25 C 0.09 0.97 10.16 127.77 1.30 2.27 16 26 C 0.07 0.16 10.21 127.77 1.30 1.47 16 27 C -0.06 -1.46 9.69 22.25 0.22 -1.24 16 28 C -0.21 -5.73 9.90 22.40 0.22 -5.51 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.06 1.35 7.22 -2.39 -0.02 1.33 16 32 H 0.08 2.42 8.07 -2.39 -0.02 2.40 16 33 H 0.10 2.28 6.44 -2.39 -0.02 2.26 16 34 H 0.03 1.38 8.07 -2.39 -0.02 1.36 16 35 H 0.00 -0.24 7.42 -2.38 -0.02 -0.25 16 36 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.11 2.66 7.22 -2.39 -0.02 2.65 16 38 H 0.11 2.65 6.99 -2.38 -0.02 2.64 16 39 H 0.40 14.19 7.45 -92.71 -0.69 13.50 16 40 H 0.13 2.71 6.73 -2.91 -0.02 2.69 16 41 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 42 H 0.13 0.81 7.34 -2.39 -0.02 0.79 16 43 H 0.12 0.90 8.05 -2.39 -0.02 0.88 16 44 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.11 0.43 7.80 -2.38 -0.02 0.41 16 46 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 48 H 0.09 -0.08 7.92 -2.39 -0.02 -0.09 16 49 H 0.09 -0.04 6.44 -2.38 -0.02 -0.06 16 50 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 51 H 0.12 3.07 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -85.59 420.93 3.45 -82.14 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.24 Total: 24.84 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 7.84 Total: 12.91 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -6.56 Total: -118.99 kcal Atomic # 8 Polarization: -48.06 SS G_CDS: -0.09 Total: -48.15 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -85.59 3.45 -82.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088533822.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.584 kcal (2) G-P(sol) polarization free energy of solvation -85.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds