Wall clock time and date at job start Wed Apr 1 2020 05:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47029 * 2 1 4 4 C 1.36942 * 119.99879 * 266.00144 * 3 2 1 5 5 H 1.08007 * 119.99694 * 338.65956 * 4 3 2 6 6 C 1.38808 * 120.00407 * 158.66570 * 4 3 2 7 7 N 1.31622 * 119.99521 * 5.78413 * 6 4 3 8 8 Si 1.86796 * 120.00331 * 185.78788 * 6 4 3 9 9 H 1.48506 * 109.47031 * 59.99789 * 8 6 4 10 10 H 1.48502 * 109.47244 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47397 * 299.99585 * 8 6 4 12 12 C 1.46496 * 120.00119 * 86.00136 * 3 2 1 13 13 C 1.50697 * 109.47162 * 269.99606 * 12 3 2 14 14 O 1.21279 * 119.99935 * 0.02562 * 13 12 3 15 15 N 1.34777 * 120.00378 * 179.97438 * 13 12 3 16 16 C 1.46500 * 120.00251 * 180.02562 * 15 13 12 17 17 C 1.50704 * 109.47169 * 179.97438 * 16 15 13 18 18 O 1.21286 * 119.99891 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99808 * 180.02562 * 17 16 15 20 20 C 1.39922 * 119.99582 * 174.87894 * 19 17 16 21 21 C 1.38869 * 120.07146 * 308.54313 * 20 19 17 22 22 C 1.50693 * 120.03790 * 359.97438 * 21 20 19 23 23 C 1.38119 * 119.92576 * 179.67928 * 21 20 19 24 24 C 1.38284 * 120.07348 * 0.61520 * 23 21 20 25 25 C 1.50698 * 119.93312 * 179.70278 * 24 23 21 26 26 C 1.38287 * 120.13845 * 359.68432 * 24 23 21 27 27 C 1.38114 * 120.06893 * 359.97438 * 26 24 23 28 28 C 1.50703 * 120.03449 * 180.02562 * 27 26 24 29 29 H 1.09000 * 109.47314 * 60.00229 * 1 2 3 30 30 H 1.08996 * 109.46982 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46918 * 299.99833 * 1 2 3 32 32 H 1.09000 * 109.47213 * 239.99811 * 2 1 3 33 33 H 1.09000 * 109.47314 * 119.99771 * 2 1 3 34 34 H 0.97005 * 119.99814 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47083 * 149.99917 * 12 3 2 36 36 H 1.09003 * 109.47360 * 29.99743 * 12 3 2 37 37 H 0.97005 * 119.99815 * 0.02562 * 15 13 12 38 38 H 1.08998 * 109.47066 * 60.00185 * 16 15 13 39 39 H 1.09003 * 109.47023 * 300.00228 * 16 15 13 40 40 H 0.96998 * 120.00294 * 355.15345 * 19 17 16 41 41 H 1.09001 * 109.47426 * 97.76730 * 22 21 20 42 42 H 1.09005 * 109.47154 * 217.77140 * 22 21 20 43 43 H 1.08999 * 109.46950 * 337.76409 * 22 21 20 44 44 H 1.08003 * 119.96738 * 180.34562 * 23 21 20 45 45 H 1.09004 * 109.47078 * 269.98158 * 25 24 23 46 46 H 1.08999 * 109.46647 * 29.97734 * 25 24 23 47 47 H 1.08989 * 109.47130 * 149.98112 * 25 24 23 48 48 H 1.07994 * 119.96507 * 180.02562 * 26 24 23 49 49 H 1.09000 * 109.46764 * 269.98448 * 28 27 26 50 50 H 1.09000 * 109.46970 * 29.98240 * 28 27 26 51 51 H 1.08996 * 109.47230 * 149.98396 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3245 1.9992 -1.1831 5 1 2.5425 1.4081 -2.0604 6 6 2.3548 3.3851 -1.2548 7 7 2.2020 4.1040 -0.1629 8 14 2.6124 4.2298 -2.9008 9 1 1.5195 3.8463 -3.8304 10 1 2.6038 5.7023 -2.7082 11 1 3.9178 3.8126 -3.4725 12 6 2.1791 2.1013 1.2656 13 6 0.8980 2.8207 1.6004 14 8 -0.0556 2.7395 0.8555 15 7 0.8115 3.5536 2.7282 16 6 -0.4341 4.2525 3.0540 17 6 -0.2692 4.9924 4.3565 18 8 0.7850 4.9405 4.9541 19 7 -1.2934 5.7108 4.8578 20 6 -1.1777 6.3093 6.1172 21 6 -0.7753 5.5553 7.2117 22 6 -0.4632 4.0905 7.0448 23 6 -0.6557 6.1507 8.4522 24 6 -0.9483 7.4932 8.6076 25 6 -0.8231 8.1381 9.9639 26 6 -1.3552 8.2455 7.5209 27 6 -1.4700 7.6576 6.2764 28 6 -1.9129 8.4783 5.0925 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.2235 5.0725 -0.2129 35 1 2.9884 2.8253 1.1714 36 1 2.4160 1.3927 2.0593 37 1 1.5741 3.6182 3.3243 38 1 -1.2433 3.5282 3.1480 39 1 -0.6713 4.9613 2.2606 40 1 -2.1122 5.8096 4.3473 41 1 0.6138 3.9580 6.9410 42 1 -0.8141 3.5423 7.9192 43 1 -0.9635 3.7116 6.1537 44 1 -0.3374 5.5661 9.3028 45 1 -1.7722 8.0569 10.4938 46 1 -0.0438 7.6339 10.5353 47 1 -0.5629 9.1896 9.8436 48 1 -1.5826 9.2938 7.6453 49 1 -2.9990 8.4390 5.0092 50 1 -1.5961 9.5123 5.2283 51 1 -1.4641 8.0770 4.1839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121001319.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:38 Heat of formation + Delta-G solvation = -20.841566 kcal Electronic energy + Delta-G solvation = -31084.765262 eV Core-core repulsion = 26985.014724 eV Total energy + Delta-G solvation = -4099.750538 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.92386 -39.04584 -38.00197 -35.47274 -35.18042 -33.71104 -33.21854 -32.30345 -31.76310 -29.30332 -28.18632 -28.11644 -26.87103 -26.55273 -25.25290 -23.39405 -21.55474 -20.99478 -20.41007 -20.12214 -19.31567 -17.96630 -17.15473 -16.70197 -16.37372 -15.52193 -15.24966 -14.94485 -14.82702 -14.56707 -14.30455 -14.01441 -13.82853 -13.53765 -13.46331 -13.36557 -13.20720 -13.18922 -13.07802 -12.82168 -12.59611 -12.39522 -12.15100 -11.89288 -11.85551 -11.55235 -11.46961 -11.29378 -11.21675 -11.10934 -10.85745 -10.71617 -10.34839 -10.09261 -10.01514 -9.83944 -9.80436 -9.66804 -8.74911 -8.69844 -8.26196 -8.20788 -8.01597 -6.76878 -5.74254 -3.13875 1.09592 1.22555 2.58116 2.94186 3.42453 3.47754 3.49520 3.52964 4.25438 4.37184 4.55283 4.59833 4.61856 4.66529 4.74604 5.06371 5.09588 5.23506 5.29457 5.33976 5.38796 5.43822 5.46693 5.55358 5.59833 5.64131 5.65330 5.68903 5.74077 5.78962 5.94202 6.16811 6.18070 6.20149 6.32283 6.41186 6.44459 6.47277 6.50983 6.55610 6.70780 6.88430 6.92835 7.06582 7.19528 7.37685 7.47298 7.53075 7.78038 8.11457 8.39785 8.73568 9.24618 9.77375 9.92678 10.33741 11.32273 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016826 B = 0.002441 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.656302 B =11467.222698 C =12384.031508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 N -0.578 5.578 4 C -0.239 4.239 5 H 0.073 0.927 6 C 0.004 3.996 7 N -0.911 5.911 8 Si 0.912 3.088 9 H -0.286 1.286 10 H -0.292 1.292 11 H -0.286 1.286 12 C 0.168 3.832 13 C 0.535 3.465 14 O -0.540 6.540 15 N -0.739 5.739 16 C 0.113 3.887 17 C 0.510 3.490 18 O -0.513 6.513 19 N -0.678 5.678 20 C 0.137 3.863 21 C -0.067 4.067 22 C -0.109 4.109 23 C -0.115 4.115 24 C -0.090 4.090 25 C -0.111 4.111 26 C -0.116 4.116 27 C -0.091 4.091 28 C -0.115 4.115 29 H 0.052 0.948 30 H 0.024 0.976 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.032 0.968 34 H 0.253 0.747 35 H 0.119 0.881 36 H 0.027 0.973 37 H 0.398 0.602 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.410 0.590 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.123 0.877 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.123 0.877 49 H 0.070 0.930 50 H 0.068 0.932 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 6.240 18.892 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.018 3.982 3 N -0.298 5.298 4 C -0.368 4.368 5 H 0.091 0.909 6 C -0.192 4.192 7 N -0.558 5.558 8 Si 0.742 3.258 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.212 1.212 12 C 0.037 3.963 13 C 0.323 3.677 14 O -0.415 6.415 15 N -0.398 5.398 16 C -0.016 4.016 17 C 0.299 3.701 18 O -0.387 6.387 19 N -0.326 5.326 20 C 0.044 3.956 21 C -0.069 4.069 22 C -0.165 4.165 23 C -0.133 4.133 24 C -0.090 4.090 25 C -0.168 4.168 26 C -0.135 4.135 27 C -0.093 4.093 28 C -0.172 4.172 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.136 0.864 36 H 0.045 0.955 37 H 0.234 0.766 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.246 0.754 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.141 0.859 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.141 0.859 49 H 0.089 0.911 50 H 0.087 0.913 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.424 6.217 18.649 21.387 hybrid contribution -0.302 1.019 -0.897 1.391 sum -8.726 7.236 17.752 21.063 Atomic orbital electron populations 1.22327 0.99169 0.97677 1.02750 1.20873 0.92420 0.86592 0.98363 1.43797 1.73822 1.09632 1.02543 1.19227 1.39270 0.89416 0.88839 0.90908 1.24906 1.00724 0.96409 0.97199 1.69640 1.55520 1.05047 1.25605 0.86217 0.77679 0.78262 0.83604 1.21273 1.21828 1.21240 1.20685 0.94951 0.94494 0.86122 1.22141 0.90907 0.77477 0.77209 1.90488 1.39773 1.63450 1.47791 1.46056 1.13552 1.53384 1.26780 1.20742 0.91632 0.96698 0.92478 1.21098 0.83247 0.78549 0.87256 1.90695 1.26454 1.61048 1.60491 1.43429 1.18525 1.52837 1.17823 1.17259 1.02899 0.90776 0.84645 1.19845 0.98804 0.96335 0.91886 1.20872 1.03195 0.90925 1.01524 1.20733 1.01744 0.94347 0.96508 1.19855 0.99481 0.93947 0.95744 1.20757 1.02120 1.00519 0.93422 1.20695 1.01761 0.99616 0.91395 1.19829 1.01506 0.92082 0.95903 1.20750 1.01244 0.99405 0.95803 0.92921 0.95735 0.92936 0.93548 0.94947 0.93604 0.86375 0.95526 0.76627 0.89803 0.89432 0.75376 0.89543 0.92159 0.92289 0.85899 0.91311 0.91583 0.91641 0.85929 0.91095 0.91254 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 9.31 37.16 0.35 -3.02 16 2 C 0.14 3.10 6.43 -4.04 -0.03 3.07 16 3 N -0.58 -14.53 2.10 -174.61 -0.37 -14.90 16 4 C -0.24 -6.54 9.70 -15.06 -0.15 -6.68 16 5 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 6 C 0.00 0.11 5.39 -17.43 -0.09 0.01 16 7 N -0.91 -25.35 8.19 55.49 0.45 -24.90 16 8 Si 0.91 22.32 29.56 -169.99 -5.02 17.30 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.17 3.96 5.47 -5.20 -0.03 3.93 16 13 C 0.53 12.48 5.52 -10.99 -0.06 12.42 16 14 O -0.54 -14.36 13.79 5.56 0.08 -14.29 16 15 N -0.74 -14.29 5.53 -61.47 -0.34 -14.62 16 16 C 0.11 1.82 6.16 -5.19 -0.03 1.78 16 17 C 0.51 7.38 5.98 -10.98 -0.07 7.32 16 18 O -0.51 -8.79 12.73 5.55 0.07 -8.72 16 19 N -0.68 -7.83 3.94 -9.86 -0.04 -7.87 16 20 C 0.14 1.68 5.85 -83.69 -0.49 1.19 16 21 C -0.07 -0.82 5.48 -104.44 -0.57 -1.39 16 22 C -0.11 -1.31 8.21 36.00 0.30 -1.01 16 23 C -0.11 -1.23 9.38 -39.61 -0.37 -1.60 16 24 C -0.09 -0.88 5.88 -104.59 -0.62 -1.49 16 25 C -0.11 -0.77 10.01 36.00 0.36 -0.41 16 26 C -0.12 -1.15 9.35 -39.61 -0.37 -1.52 16 27 C -0.09 -0.99 5.90 -104.43 -0.62 -1.60 16 28 C -0.12 -1.01 9.66 36.01 0.35 -0.66 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 1.18 6.40 -51.93 -0.33 0.84 16 32 H 0.05 0.96 7.98 -51.93 -0.41 0.54 16 33 H 0.03 0.62 7.95 -51.93 -0.41 0.21 16 34 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.12 3.02 6.24 -51.93 -0.32 2.70 16 36 H 0.03 0.56 7.93 -51.93 -0.41 0.14 16 37 H 0.40 7.41 7.44 -40.82 -0.30 7.11 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 40 H 0.41 3.61 8.65 -40.82 -0.35 3.26 16 41 H 0.09 1.18 7.07 -51.93 -0.37 0.81 16 42 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 43 H 0.06 0.74 6.14 -51.93 -0.32 0.42 16 44 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 47 H 0.06 0.40 8.08 -51.94 -0.42 -0.02 16 48 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 51 H 0.07 0.66 7.45 -51.93 -0.39 0.27 16 LS Contribution 407.55 15.07 6.14 6.14 Total: -1.00 -33.26 407.55 -9.40 -42.66 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -8.23 Total: 8.86 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: -2.14 Total: 10.33 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.29 Total: -62.29 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.15 Total: -23.00 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.26 -9.40 -42.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121001319.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.819 kcal (2) G-P(sol) polarization free energy of solvation -33.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds