Wall clock time and date at job start Wed Apr 1 2020 05:58:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46498 * 109.47029 * 2 1
4 4 C 1.36942 * 119.99879 * 266.00144 * 3 2 1
5 5 H 1.08007 * 119.99694 * 338.65956 * 4 3 2
6 6 C 1.38808 * 120.00407 * 158.66570 * 4 3 2
7 7 N 1.31622 * 119.99521 * 5.78413 * 6 4 3
8 8 Si 1.86796 * 120.00331 * 185.78788 * 6 4 3
9 9 H 1.48506 * 109.47031 * 59.99789 * 8 6 4
10 10 H 1.48502 * 109.47244 * 179.97438 * 8 6 4
11 11 H 1.48496 * 109.47397 * 299.99585 * 8 6 4
12 12 C 1.46496 * 120.00119 * 86.00136 * 3 2 1
13 13 C 1.50697 * 109.47162 * 269.99606 * 12 3 2
14 14 O 1.21279 * 119.99935 * 0.02562 * 13 12 3
15 15 N 1.34777 * 120.00378 * 179.97438 * 13 12 3
16 16 C 1.46500 * 120.00251 * 180.02562 * 15 13 12
17 17 C 1.50704 * 109.47169 * 179.97438 * 16 15 13
18 18 O 1.21286 * 119.99891 * 359.97438 * 17 16 15
19 19 N 1.34776 * 119.99808 * 180.02562 * 17 16 15
20 20 C 1.39922 * 119.99582 * 174.87894 * 19 17 16
21 21 C 1.38869 * 120.07146 * 308.54313 * 20 19 17
22 22 C 1.50693 * 120.03790 * 359.97438 * 21 20 19
23 23 C 1.38119 * 119.92576 * 179.67928 * 21 20 19
24 24 C 1.38284 * 120.07348 * 0.61520 * 23 21 20
25 25 C 1.50698 * 119.93312 * 179.70278 * 24 23 21
26 26 C 1.38287 * 120.13845 * 359.68432 * 24 23 21
27 27 C 1.38114 * 120.06893 * 359.97438 * 26 24 23
28 28 C 1.50703 * 120.03449 * 180.02562 * 27 26 24
29 29 H 1.09000 * 109.47314 * 60.00229 * 1 2 3
30 30 H 1.08996 * 109.46982 * 180.02562 * 1 2 3
31 31 H 1.09005 * 109.46918 * 299.99833 * 1 2 3
32 32 H 1.09000 * 109.47213 * 239.99811 * 2 1 3
33 33 H 1.09000 * 109.47314 * 119.99771 * 2 1 3
34 34 H 0.97005 * 119.99814 * 179.97438 * 7 6 4
35 35 H 1.08998 * 109.47083 * 149.99917 * 12 3 2
36 36 H 1.09003 * 109.47360 * 29.99743 * 12 3 2
37 37 H 0.97005 * 119.99815 * 0.02562 * 15 13 12
38 38 H 1.08998 * 109.47066 * 60.00185 * 16 15 13
39 39 H 1.09003 * 109.47023 * 300.00228 * 16 15 13
40 40 H 0.96998 * 120.00294 * 355.15345 * 19 17 16
41 41 H 1.09001 * 109.47426 * 97.76730 * 22 21 20
42 42 H 1.09005 * 109.47154 * 217.77140 * 22 21 20
43 43 H 1.08999 * 109.46950 * 337.76409 * 22 21 20
44 44 H 1.08003 * 119.96738 * 180.34562 * 23 21 20
45 45 H 1.09004 * 109.47078 * 269.98158 * 25 24 23
46 46 H 1.08999 * 109.46647 * 29.97734 * 25 24 23
47 47 H 1.08989 * 109.47130 * 149.98112 * 25 24 23
48 48 H 1.07994 * 119.96507 * 180.02562 * 26 24 23
49 49 H 1.09000 * 109.46764 * 269.98448 * 28 27 26
50 50 H 1.09000 * 109.46970 * 29.98240 * 28 27 26
51 51 H 1.08996 * 109.47230 * 149.98396 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.3245 1.9992 -1.1831
5 1 2.5425 1.4081 -2.0604
6 6 2.3548 3.3851 -1.2548
7 7 2.2020 4.1040 -0.1629
8 14 2.6124 4.2298 -2.9008
9 1 1.5195 3.8463 -3.8304
10 1 2.6038 5.7023 -2.7082
11 1 3.9178 3.8126 -3.4725
12 6 2.1791 2.1013 1.2656
13 6 0.8980 2.8207 1.6004
14 8 -0.0556 2.7395 0.8555
15 7 0.8115 3.5536 2.7282
16 6 -0.4341 4.2525 3.0540
17 6 -0.2692 4.9924 4.3565
18 8 0.7850 4.9405 4.9541
19 7 -1.2934 5.7108 4.8578
20 6 -1.1777 6.3093 6.1172
21 6 -0.7753 5.5553 7.2117
22 6 -0.4632 4.0905 7.0448
23 6 -0.6557 6.1507 8.4522
24 6 -0.9483 7.4932 8.6076
25 6 -0.8231 8.1381 9.9639
26 6 -1.3552 8.2455 7.5209
27 6 -1.4700 7.6576 6.2764
28 6 -1.9129 8.4783 5.0925
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 -1.0276 0.0005
31 1 -0.3633 0.5138 0.8901
32 1 1.8934 -0.5139 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 2.2235 5.0725 -0.2129
35 1 2.9884 2.8253 1.1714
36 1 2.4160 1.3927 2.0593
37 1 1.5741 3.6182 3.3243
38 1 -1.2433 3.5282 3.1480
39 1 -0.6713 4.9613 2.2606
40 1 -2.1122 5.8096 4.3473
41 1 0.6138 3.9580 6.9410
42 1 -0.8141 3.5423 7.9192
43 1 -0.9635 3.7116 6.1537
44 1 -0.3374 5.5661 9.3028
45 1 -1.7722 8.0569 10.4938
46 1 -0.0438 7.6339 10.5353
47 1 -0.5629 9.1896 9.8436
48 1 -1.5826 9.2938 7.6453
49 1 -2.9990 8.4390 5.0092
50 1 -1.5961 9.5123 5.2283
51 1 -1.4641 8.0770 4.1839
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000121001319.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:58:38
Heat of formation + Delta-G solvation = -20.841566 kcal
Electronic energy + Delta-G solvation = -31084.765262 eV
Core-core repulsion = 26985.014724 eV
Total energy + Delta-G solvation = -4099.750538 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-40.92386 -39.04584 -38.00197 -35.47274 -35.18042 -33.71104 -33.21854 -32.30345
-31.76310 -29.30332 -28.18632 -28.11644 -26.87103 -26.55273 -25.25290 -23.39405
-21.55474 -20.99478 -20.41007 -20.12214 -19.31567 -17.96630 -17.15473 -16.70197
-16.37372 -15.52193 -15.24966 -14.94485 -14.82702 -14.56707 -14.30455 -14.01441
-13.82853 -13.53765 -13.46331 -13.36557 -13.20720 -13.18922 -13.07802 -12.82168
-12.59611 -12.39522 -12.15100 -11.89288 -11.85551 -11.55235 -11.46961 -11.29378
-11.21675 -11.10934 -10.85745 -10.71617 -10.34839 -10.09261 -10.01514 -9.83944
-9.80436 -9.66804 -8.74911 -8.69844 -8.26196 -8.20788 -8.01597 -6.76878
-5.74254 -3.13875 1.09592 1.22555 2.58116 2.94186 3.42453 3.47754
3.49520 3.52964 4.25438 4.37184 4.55283 4.59833 4.61856 4.66529
4.74604 5.06371 5.09588 5.23506 5.29457 5.33976 5.38796 5.43822
5.46693 5.55358 5.59833 5.64131 5.65330 5.68903 5.74077 5.78962
5.94202 6.16811 6.18070 6.20149 6.32283 6.41186 6.44459 6.47277
6.50983 6.55610 6.70780 6.88430 6.92835 7.06582 7.19528 7.37685
7.47298 7.53075 7.78038 8.11457 8.39785 8.73568 9.24618 9.77375
9.92678 10.33741 11.32273
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.016826 B = 0.002441 C = 0.002260
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1663.656302 B =11467.222698 C =12384.031508
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.144 3.856
3 N -0.578 5.578
4 C -0.239 4.239
5 H 0.073 0.927
6 C 0.004 3.996
7 N -0.911 5.911
8 Si 0.912 3.088
9 H -0.286 1.286
10 H -0.292 1.292
11 H -0.286 1.286
12 C 0.168 3.832
13 C 0.535 3.465
14 O -0.540 6.540
15 N -0.739 5.739
16 C 0.113 3.887
17 C 0.510 3.490
18 O -0.513 6.513
19 N -0.678 5.678
20 C 0.137 3.863
21 C -0.067 4.067
22 C -0.109 4.109
23 C -0.115 4.115
24 C -0.090 4.090
25 C -0.111 4.111
26 C -0.116 4.116
27 C -0.091 4.091
28 C -0.115 4.115
29 H 0.052 0.948
30 H 0.024 0.976
31 H 0.052 0.948
32 H 0.046 0.954
33 H 0.032 0.968
34 H 0.253 0.747
35 H 0.119 0.881
36 H 0.027 0.973
37 H 0.398 0.602
38 H 0.084 0.916
39 H 0.088 0.912
40 H 0.410 0.590
41 H 0.086 0.914
42 H 0.060 0.940
43 H 0.058 0.942
44 H 0.123 0.877
45 H 0.068 0.932
46 H 0.065 0.935
47 H 0.065 0.935
48 H 0.123 0.877
49 H 0.070 0.930
50 H 0.068 0.932
51 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.554 6.240 18.892 21.657
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.018 3.982
3 N -0.298 5.298
4 C -0.368 4.368
5 H 0.091 0.909
6 C -0.192 4.192
7 N -0.558 5.558
8 Si 0.742 3.258
9 H -0.213 1.213
10 H -0.218 1.218
11 H -0.212 1.212
12 C 0.037 3.963
13 C 0.323 3.677
14 O -0.415 6.415
15 N -0.398 5.398
16 C -0.016 4.016
17 C 0.299 3.701
18 O -0.387 6.387
19 N -0.326 5.326
20 C 0.044 3.956
21 C -0.069 4.069
22 C -0.165 4.165
23 C -0.133 4.133
24 C -0.090 4.090
25 C -0.168 4.168
26 C -0.135 4.135
27 C -0.093 4.093
28 C -0.172 4.172
29 H 0.071 0.929
30 H 0.043 0.957
31 H 0.071 0.929
32 H 0.065 0.935
33 H 0.051 0.949
34 H 0.064 0.936
35 H 0.136 0.864
36 H 0.045 0.955
37 H 0.234 0.766
38 H 0.102 0.898
39 H 0.106 0.894
40 H 0.246 0.754
41 H 0.105 0.895
42 H 0.078 0.922
43 H 0.077 0.923
44 H 0.141 0.859
45 H 0.087 0.913
46 H 0.084 0.916
47 H 0.084 0.916
48 H 0.141 0.859
49 H 0.089 0.911
50 H 0.087 0.913
51 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -8.424 6.217 18.649 21.387
hybrid contribution -0.302 1.019 -0.897 1.391
sum -8.726 7.236 17.752 21.063
Atomic orbital electron populations
1.22327 0.99169 0.97677 1.02750 1.20873 0.92420 0.86592 0.98363
1.43797 1.73822 1.09632 1.02543 1.19227 1.39270 0.89416 0.88839
0.90908 1.24906 1.00724 0.96409 0.97199 1.69640 1.55520 1.05047
1.25605 0.86217 0.77679 0.78262 0.83604 1.21273 1.21828 1.21240
1.20685 0.94951 0.94494 0.86122 1.22141 0.90907 0.77477 0.77209
1.90488 1.39773 1.63450 1.47791 1.46056 1.13552 1.53384 1.26780
1.20742 0.91632 0.96698 0.92478 1.21098 0.83247 0.78549 0.87256
1.90695 1.26454 1.61048 1.60491 1.43429 1.18525 1.52837 1.17823
1.17259 1.02899 0.90776 0.84645 1.19845 0.98804 0.96335 0.91886
1.20872 1.03195 0.90925 1.01524 1.20733 1.01744 0.94347 0.96508
1.19855 0.99481 0.93947 0.95744 1.20757 1.02120 1.00519 0.93422
1.20695 1.01761 0.99616 0.91395 1.19829 1.01506 0.92082 0.95903
1.20750 1.01244 0.99405 0.95803 0.92921 0.95735 0.92936 0.93548
0.94947 0.93604 0.86375 0.95526 0.76627 0.89803 0.89432 0.75376
0.89543 0.92159 0.92289 0.85899 0.91311 0.91583 0.91641 0.85929
0.91095 0.91254 0.91300
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.37 9.31 37.16 0.35 -3.02 16
2 C 0.14 3.10 6.43 -4.04 -0.03 3.07 16
3 N -0.58 -14.53 2.10 -174.61 -0.37 -14.90 16
4 C -0.24 -6.54 9.70 -15.06 -0.15 -6.68 16
5 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16
6 C 0.00 0.11 5.39 -17.43 -0.09 0.01 16
7 N -0.91 -25.35 8.19 55.49 0.45 -24.90 16
8 Si 0.91 22.32 29.56 -169.99 -5.02 17.30 16
9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
10 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16
11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
12 C 0.17 3.96 5.47 -5.20 -0.03 3.93 16
13 C 0.53 12.48 5.52 -10.99 -0.06 12.42 16
14 O -0.54 -14.36 13.79 5.56 0.08 -14.29 16
15 N -0.74 -14.29 5.53 -61.47 -0.34 -14.62 16
16 C 0.11 1.82 6.16 -5.19 -0.03 1.78 16
17 C 0.51 7.38 5.98 -10.98 -0.07 7.32 16
18 O -0.51 -8.79 12.73 5.55 0.07 -8.72 16
19 N -0.68 -7.83 3.94 -9.86 -0.04 -7.87 16
20 C 0.14 1.68 5.85 -83.69 -0.49 1.19 16
21 C -0.07 -0.82 5.48 -104.44 -0.57 -1.39 16
22 C -0.11 -1.31 8.21 36.00 0.30 -1.01 16
23 C -0.11 -1.23 9.38 -39.61 -0.37 -1.60 16
24 C -0.09 -0.88 5.88 -104.59 -0.62 -1.49 16
25 C -0.11 -0.77 10.01 36.00 0.36 -0.41 16
26 C -0.12 -1.15 9.35 -39.61 -0.37 -1.52 16
27 C -0.09 -0.99 5.90 -104.43 -0.62 -1.60 16
28 C -0.12 -1.01 9.66 36.01 0.35 -0.66 16
29 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16
30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
31 H 0.05 1.18 6.40 -51.93 -0.33 0.84 16
32 H 0.05 0.96 7.98 -51.93 -0.41 0.54 16
33 H 0.03 0.62 7.95 -51.93 -0.41 0.21 16
34 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16
35 H 0.12 3.02 6.24 -51.93 -0.32 2.70 16
36 H 0.03 0.56 7.93 -51.93 -0.41 0.14 16
37 H 0.40 7.41 7.44 -40.82 -0.30 7.11 16
38 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16
39 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16
40 H 0.41 3.61 8.65 -40.82 -0.35 3.26 16
41 H 0.09 1.18 7.07 -51.93 -0.37 0.81 16
42 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16
43 H 0.06 0.74 6.14 -51.93 -0.32 0.42 16
44 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16
45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
46 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16
47 H 0.06 0.40 8.08 -51.94 -0.42 -0.02 16
48 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16
49 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
50 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16
51 H 0.07 0.66 7.45 -51.93 -0.39 0.27 16
LS Contribution 407.55 15.07 6.14 6.14
Total: -1.00 -33.26 407.55 -9.40 -42.66
By element:
Atomic # 1 Polarization: 17.10 SS G_CDS: -8.23 Total: 8.86 kcal
Atomic # 6 Polarization: 12.47 SS G_CDS: -2.14 Total: 10.33 kcal
Atomic # 7 Polarization: -62.00 SS G_CDS: -0.29 Total: -62.29 kcal
Atomic # 8 Polarization: -23.15 SS G_CDS: 0.15 Total: -23.00 kcal
Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal
Total LS contribution 6.14 Total: 6.14 kcal
Total: -33.26 -9.40 -42.66 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000121001319.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.819 kcal
(2) G-P(sol) polarization free energy of solvation -33.263 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.444 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.842 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds