Wall clock time and date at job start Wed Apr 1 2020 05:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47029 * 2 1 4 4 C 1.36942 * 119.99879 * 266.00144 * 3 2 1 5 5 H 1.08007 * 119.99694 * 338.65956 * 4 3 2 6 6 C 1.38808 * 120.00407 * 158.66570 * 4 3 2 7 7 N 1.31622 * 119.99521 * 5.78413 * 6 4 3 8 8 Si 1.86796 * 120.00331 * 185.78788 * 6 4 3 9 9 H 1.48506 * 109.47031 * 59.99789 * 8 6 4 10 10 H 1.48502 * 109.47244 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47397 * 299.99585 * 8 6 4 12 12 C 1.46496 * 120.00119 * 86.00136 * 3 2 1 13 13 C 1.50697 * 109.47162 * 269.99606 * 12 3 2 14 14 O 1.21279 * 119.99935 * 0.02562 * 13 12 3 15 15 N 1.34777 * 120.00378 * 179.97438 * 13 12 3 16 16 C 1.46500 * 120.00251 * 180.02562 * 15 13 12 17 17 C 1.50704 * 109.47169 * 179.97438 * 16 15 13 18 18 O 1.21286 * 119.99891 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99808 * 180.02562 * 17 16 15 20 20 C 1.39922 * 119.99582 * 174.87894 * 19 17 16 21 21 C 1.38869 * 120.07146 * 308.54313 * 20 19 17 22 22 C 1.50693 * 120.03790 * 359.97438 * 21 20 19 23 23 C 1.38119 * 119.92576 * 179.67928 * 21 20 19 24 24 C 1.38284 * 120.07348 * 0.61520 * 23 21 20 25 25 C 1.50698 * 119.93312 * 179.70278 * 24 23 21 26 26 C 1.38287 * 120.13845 * 359.68432 * 24 23 21 27 27 C 1.38114 * 120.06893 * 359.97438 * 26 24 23 28 28 C 1.50703 * 120.03449 * 180.02562 * 27 26 24 29 29 H 1.09000 * 109.47314 * 60.00229 * 1 2 3 30 30 H 1.08996 * 109.46982 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46918 * 299.99833 * 1 2 3 32 32 H 1.09000 * 109.47213 * 239.99811 * 2 1 3 33 33 H 1.09000 * 109.47314 * 119.99771 * 2 1 3 34 34 H 0.97005 * 119.99814 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47083 * 149.99917 * 12 3 2 36 36 H 1.09003 * 109.47360 * 29.99743 * 12 3 2 37 37 H 0.97005 * 119.99815 * 0.02562 * 15 13 12 38 38 H 1.08998 * 109.47066 * 60.00185 * 16 15 13 39 39 H 1.09003 * 109.47023 * 300.00228 * 16 15 13 40 40 H 0.96998 * 120.00294 * 355.15345 * 19 17 16 41 41 H 1.09001 * 109.47426 * 97.76730 * 22 21 20 42 42 H 1.09005 * 109.47154 * 217.77140 * 22 21 20 43 43 H 1.08999 * 109.46950 * 337.76409 * 22 21 20 44 44 H 1.08003 * 119.96738 * 180.34562 * 23 21 20 45 45 H 1.09004 * 109.47078 * 269.98158 * 25 24 23 46 46 H 1.08999 * 109.46647 * 29.97734 * 25 24 23 47 47 H 1.08989 * 109.47130 * 149.98112 * 25 24 23 48 48 H 1.07994 * 119.96507 * 180.02562 * 26 24 23 49 49 H 1.09000 * 109.46764 * 269.98448 * 28 27 26 50 50 H 1.09000 * 109.46970 * 29.98240 * 28 27 26 51 51 H 1.08996 * 109.47230 * 149.98396 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3245 1.9992 -1.1831 5 1 2.5425 1.4081 -2.0604 6 6 2.3548 3.3851 -1.2548 7 7 2.2020 4.1040 -0.1629 8 14 2.6124 4.2298 -2.9008 9 1 1.5195 3.8463 -3.8304 10 1 2.6038 5.7023 -2.7082 11 1 3.9178 3.8126 -3.4725 12 6 2.1791 2.1013 1.2656 13 6 0.8980 2.8207 1.6004 14 8 -0.0556 2.7395 0.8555 15 7 0.8115 3.5536 2.7282 16 6 -0.4341 4.2525 3.0540 17 6 -0.2692 4.9924 4.3565 18 8 0.7850 4.9405 4.9541 19 7 -1.2934 5.7108 4.8578 20 6 -1.1777 6.3093 6.1172 21 6 -0.7753 5.5553 7.2117 22 6 -0.4632 4.0905 7.0448 23 6 -0.6557 6.1507 8.4522 24 6 -0.9483 7.4932 8.6076 25 6 -0.8231 8.1381 9.9639 26 6 -1.3552 8.2455 7.5209 27 6 -1.4700 7.6576 6.2764 28 6 -1.9129 8.4783 5.0925 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.2235 5.0725 -0.2129 35 1 2.9884 2.8253 1.1714 36 1 2.4160 1.3927 2.0593 37 1 1.5741 3.6182 3.3243 38 1 -1.2433 3.5282 3.1480 39 1 -0.6713 4.9613 2.2606 40 1 -2.1122 5.8096 4.3473 41 1 0.6138 3.9580 6.9410 42 1 -0.8141 3.5423 7.9192 43 1 -0.9635 3.7116 6.1537 44 1 -0.3374 5.5661 9.3028 45 1 -1.7722 8.0569 10.4938 46 1 -0.0438 7.6339 10.5353 47 1 -0.5629 9.1896 9.8436 48 1 -1.5826 9.2938 7.6453 49 1 -2.9990 8.4390 5.0092 50 1 -1.5961 9.5123 5.2283 51 1 -1.4641 8.0770 4.1839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121001319.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:37 Heat of formation + Delta-G solvation = -40.720087 kcal Electronic energy + Delta-G solvation = -31085.627259 eV Core-core repulsion = 26985.014724 eV Total energy + Delta-G solvation = -4100.612535 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.93289 -40.28780 -39.54441 -37.21532 -36.24552 -34.92998 -34.46676 -33.72434 -33.18112 -31.06735 -29.71297 -28.87689 -28.04115 -27.65182 -26.46980 -25.23453 -22.66020 -22.15866 -21.74732 -21.13559 -20.99898 -19.21631 -18.62663 -18.21352 -17.44376 -17.05333 -16.94366 -16.44071 -16.20316 -15.66425 -15.48652 -15.29705 -15.08138 -14.91665 -14.86104 -14.55719 -14.11879 -14.08777 -13.99980 -13.93795 -13.89805 -13.61515 -13.51084 -13.31804 -13.14366 -12.96306 -12.82575 -12.64698 -12.55960 -12.27641 -12.26207 -12.06751 -12.02531 -11.96828 -11.75357 -11.43797 -11.19450 -10.86601 -10.73976 -10.18088 -9.69285 -9.50800 -9.08489 -8.72936 -7.81020 -5.20938 0.25332 0.40919 1.43076 1.45850 1.49886 1.53901 1.85340 2.45016 2.58809 2.71852 2.85374 3.40576 3.58194 3.75323 3.82171 3.83203 3.94596 4.31360 4.34657 4.38449 4.42588 4.48065 4.48458 4.50080 4.67707 4.69011 4.71854 4.75078 4.77808 4.78657 4.88236 4.89315 4.97918 5.04548 5.09784 5.13875 5.19106 5.29504 5.33007 5.41410 5.47841 5.49964 5.58897 5.64270 5.67505 5.71268 5.84915 6.09034 6.31364 6.38660 6.98792 7.04447 7.23070 7.85835 8.07854 8.32498 9.21595 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016826 B = 0.002441 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.656302 B =11467.222698 C =12384.031508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.138 3.862 3 N -0.594 5.594 4 C -0.250 4.250 5 H 0.072 0.928 6 C -0.045 4.045 7 N -0.921 5.921 8 Si 0.966 3.034 9 H -0.292 1.292 10 H -0.298 1.298 11 H -0.275 1.275 12 C 0.165 3.835 13 C 0.538 3.462 14 O -0.577 6.577 15 N -0.731 5.731 16 C 0.116 3.884 17 C 0.520 3.480 18 O -0.542 6.542 19 N -0.660 5.660 20 C 0.109 3.891 21 C -0.087 4.087 22 C -0.102 4.102 23 C -0.126 4.126 24 C -0.090 4.090 25 C -0.110 4.110 26 C -0.122 4.122 27 C -0.097 4.097 28 C -0.114 4.114 29 H 0.019 0.981 30 H 0.061 0.939 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.243 0.757 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.402 0.598 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.422 0.578 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.048 0.952 44 H 0.137 0.863 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.146 0.854 49 H 0.089 0.911 50 H 0.080 0.920 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.298 6.794 20.345 23.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 N -0.315 5.315 4 C -0.380 4.380 5 H 0.090 0.910 6 C -0.239 4.239 7 N -0.569 5.569 8 Si 0.796 3.204 9 H -0.219 1.219 10 H -0.225 1.225 11 H -0.201 1.201 12 C 0.035 3.965 13 C 0.326 3.674 14 O -0.455 6.455 15 N -0.388 5.388 16 C -0.012 4.012 17 C 0.308 3.692 18 O -0.418 6.418 19 N -0.308 5.308 20 C 0.017 3.983 21 C -0.089 4.089 22 C -0.159 4.159 23 C -0.144 4.144 24 C -0.090 4.090 25 C -0.167 4.167 26 C -0.140 4.140 27 C -0.099 4.099 28 C -0.170 4.170 29 H 0.039 0.961 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.113 0.887 36 H 0.073 0.927 37 H 0.238 0.762 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.261 0.739 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.067 0.933 44 H 0.155 0.845 45 H 0.101 0.899 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.164 0.836 49 H 0.107 0.893 50 H 0.099 0.901 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.189 6.776 20.139 23.151 hybrid contribution -0.099 0.845 -1.232 1.497 sum -9.288 7.622 18.908 22.402 Atomic orbital electron populations 1.22142 0.98846 0.99207 1.00257 1.21062 0.92584 0.85057 0.99987 1.43995 1.74359 1.10882 1.02270 1.19469 1.38957 0.89772 0.89768 0.90983 1.25548 1.01485 0.97142 0.99743 1.69831 1.56349 1.04198 1.26476 0.85353 0.77677 0.76831 0.80517 1.21865 1.22452 1.20052 1.20644 0.94482 0.94729 0.86635 1.21965 0.90309 0.77596 0.77549 1.90465 1.40876 1.64897 1.49236 1.45810 1.14829 1.52519 1.25682 1.20780 0.90385 0.96829 0.93221 1.20686 0.83447 0.78659 0.86452 1.90689 1.27696 1.62329 1.61109 1.43158 1.18170 1.51597 1.17860 1.17490 1.04710 0.91698 0.84432 1.20035 0.99573 0.96465 0.92788 1.20775 1.01745 0.91515 1.01870 1.20983 1.01870 0.95183 0.96407 1.20253 0.97982 0.93632 0.97163 1.20816 1.03100 1.00919 0.91828 1.21042 1.01201 1.00803 0.90984 1.20114 1.00996 0.91670 0.97119 1.20784 1.02335 0.99542 0.94368 0.96133 0.92048 0.94588 0.92855 0.92253 0.94745 0.88672 0.92654 0.76160 0.88450 0.90248 0.73899 0.91532 0.90374 0.93277 0.84496 0.89942 0.91004 0.90547 0.83606 0.89259 0.90129 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.98 9.31 71.98 0.67 -5.31 16 2 C 0.14 5.78 6.43 86.38 0.56 6.33 16 3 N -0.59 -29.83 2.10 -706.35 -1.49 -31.32 16 4 C -0.25 -13.77 9.70 84.03 0.82 -12.96 16 5 H 0.07 3.88 7.80 -2.91 -0.02 3.85 16 6 C -0.04 -2.51 5.39 84.86 0.46 -2.05 16 7 N -0.92 -52.18 8.19 21.65 0.18 -52.00 16 8 Si 0.97 46.43 29.56 68.60 2.03 48.46 16 9 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 10 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 12 C 0.17 7.82 5.47 85.63 0.47 8.29 16 13 C 0.54 25.37 5.52 87.66 0.48 25.85 16 14 O -0.58 -31.14 13.79 -3.03 -0.04 -31.18 16 15 N -0.73 -28.65 5.53 -466.79 -2.58 -31.23 16 16 C 0.12 3.76 6.16 85.63 0.53 4.29 16 17 C 0.52 15.17 5.98 87.66 0.52 15.70 16 18 O -0.54 -18.90 12.73 -3.05 -0.04 -18.93 16 19 N -0.66 -15.10 3.94 -303.50 -1.20 -16.29 16 20 C 0.11 2.62 5.85 38.15 0.22 2.84 16 21 C -0.09 -2.10 5.48 -19.74 -0.11 -2.21 16 22 C -0.10 -2.47 8.21 71.23 0.59 -1.89 16 23 C -0.13 -2.56 9.38 22.25 0.21 -2.35 16 24 C -0.09 -1.57 5.88 -19.84 -0.12 -1.69 16 25 C -0.11 -1.21 10.01 71.24 0.71 -0.50 16 26 C -0.12 -2.15 9.35 22.25 0.21 -1.94 16 27 C -0.10 -1.97 5.90 -19.74 -0.12 -2.09 16 28 C -0.11 -1.80 9.66 71.24 0.69 -1.11 16 29 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.03 1.58 6.40 -2.38 -0.02 1.57 16 32 H 0.05 2.12 7.98 -2.39 -0.02 2.11 16 33 H 0.06 2.15 7.95 -2.39 -0.02 2.13 16 34 H 0.24 13.87 8.31 -92.70 -0.77 13.10 16 35 H 0.10 4.96 6.24 -2.39 -0.01 4.95 16 36 H 0.06 2.26 7.93 -2.39 -0.02 2.24 16 37 H 0.40 15.21 7.44 -92.70 -0.69 14.52 16 38 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.42 7.24 8.65 -92.71 -0.80 6.44 16 41 H 0.07 1.86 7.07 -2.39 -0.02 1.85 16 42 H 0.08 1.51 8.13 -2.38 -0.02 1.49 16 43 H 0.05 1.24 6.14 -2.39 -0.01 1.22 16 44 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 45 H 0.08 0.71 8.14 -2.38 -0.02 0.70 16 46 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16 47 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 48 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 49 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 51 H 0.06 1.04 7.45 -2.39 -0.02 1.02 16 Total: -1.00 -72.24 407.55 3.11 -69.13 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: -0.54 Total: 34.17 kcal Atomic # 6 Polarization: 22.42 SS G_CDS: 6.79 Total: 29.20 kcal Atomic # 7 Polarization: -125.76 SS G_CDS: -5.08 Total: -130.84 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -0.08 Total: -50.12 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -72.24 3.11 -69.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121001319.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.408 kcal (2) G-P(sol) polarization free energy of solvation -72.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds