Wall clock time and date at job start Wed Apr 1 2020 05:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46493 * 109.46829 * 2 1 4 4 C 1.46501 * 120.00032 * 269.99994 * 3 2 1 5 5 C 1.50698 * 109.47340 * 269.99911 * 4 3 2 6 6 H 1.08009 * 119.99431 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00434 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00373 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99645 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47111 * 90.00458 * 9 7 5 11 11 H 1.48506 * 109.47058 * 209.99997 * 9 7 5 12 12 H 1.48495 * 109.47416 * 330.00029 * 9 7 5 13 13 C 1.34779 * 120.00020 * 90.00132 * 3 2 1 14 14 O 1.21287 * 119.99841 * 180.02562 * 13 3 2 15 15 C 1.50693 * 120.00163 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.47569 * 180.02562 * 15 13 3 17 17 C 1.46896 * 111.00132 * 180.02562 * 16 15 13 18 18 H 1.09003 * 109.47232 * 324.99330 * 17 16 15 19 19 C 1.52993 * 109.47327 * 85.00052 * 17 16 15 20 20 C 1.50705 * 109.47067 * 205.00198 * 17 16 15 21 21 C 1.38303 * 119.96138 * 320.01672 * 20 17 16 22 22 C 1.38254 * 120.14312 * 180.02562 * 21 20 17 23 23 C 1.38131 * 120.07060 * 359.96537 * 22 21 20 24 24 C 1.38858 * 119.92810 * 359.76094 * 23 22 21 25 25 N 1.39924 * 120.07215 * 180.27846 * 24 23 22 26 26 C 1.34777 * 119.99770 * 213.51425 * 25 24 23 27 27 C 1.50702 * 119.99884 * 185.27280 * 26 25 24 28 28 O 1.21284 * 120.00318 * 5.27975 * 26 25 24 29 29 C 1.38088 * 119.96847 * 140.00050 * 20 17 16 30 30 H 1.09008 * 109.46875 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47314 * 299.99772 * 1 2 3 32 32 H 1.08996 * 109.47263 * 60.00330 * 1 2 3 33 33 H 1.09000 * 109.47030 * 239.99773 * 2 1 3 34 34 H 1.09000 * 109.46953 * 120.00079 * 2 1 3 35 35 H 1.09002 * 109.47307 * 30.00084 * 4 3 2 36 36 H 1.09002 * 109.46849 * 150.00256 * 4 3 2 37 37 H 0.96994 * 120.00106 * 180.02562 * 8 7 5 38 38 H 1.08998 * 109.47132 * 59.99741 * 15 13 3 39 39 H 1.09008 * 109.47195 * 300.00326 * 15 13 3 40 40 H 1.00900 * 110.99838 * 303.95312 * 16 15 13 41 41 H 1.08997 * 109.47335 * 180.02562 * 19 17 16 42 42 H 1.09001 * 109.47124 * 299.99719 * 19 17 16 43 43 H 1.09001 * 109.47335 * 59.99973 * 19 17 16 44 44 H 1.08008 * 119.92948 * 0.02562 * 21 20 17 45 45 H 1.08005 * 119.96708 * 179.97438 * 22 21 20 46 46 H 1.08002 * 120.03675 * 180.02562 * 23 22 21 47 47 H 0.97001 * 119.99708 * 33.52217 * 25 24 23 48 48 H 1.09002 * 109.46739 * 90.00158 * 27 26 25 49 49 H 1.09002 * 109.47306 * 210.00657 * 27 26 25 50 50 H 1.09005 * 109.47416 * 330.00692 * 27 26 25 51 51 H 1.07996 * 120.03145 * 359.97318 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0961 7 6 4.1490 2.3897 -2.8780 8 7 5.3910 2.1828 -3.2579 9 14 3.0126 3.4352 -3.9292 10 1 3.1161 4.8555 -3.5082 11 1 3.4055 3.3120 -5.3560 12 1 1.6130 2.9692 -3.7592 13 6 2.2429 2.0165 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9913 1.3064 2.4723 16 7 2.3090 2.2065 3.5889 17 6 2.0757 1.5462 4.8802 18 1 1.2157 0.8815 4.7982 19 6 3.3128 0.7343 5.2688 20 6 1.8064 2.5878 5.9356 21 6 2.5329 3.7646 5.9458 22 6 2.2894 4.7224 6.9126 23 6 1.3186 4.5070 7.8713 24 6 0.5836 3.3289 7.8604 25 7 -0.4045 3.1101 8.8267 26 6 -0.6405 1.8624 9.2785 27 6 -1.7821 1.6087 10.2291 28 8 0.0658 0.9439 8.9202 29 6 0.8345 2.3663 6.8911 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.5817 1.6877 -2.0284 36 1 2.0955 3.1410 -1.1383 37 1 5.7170 2.5732 -4.0837 38 1 2.6212 0.4187 2.5302 39 1 0.9432 1.0125 2.5298 40 1 3.2573 2.5446 3.5222 41 1 3.1395 0.2440 6.2267 42 1 3.5075 -0.0190 4.5055 43 1 4.1727 1.3991 5.3508 44 1 3.2922 3.9357 5.1969 45 1 2.8587 5.6402 6.9182 46 1 1.1286 5.2558 8.6261 47 1 -0.9197 3.8563 9.1712 48 1 -2.6832 1.3772 9.6611 49 1 -1.5351 0.7679 10.8773 50 1 -1.9537 2.4975 10.8364 51 1 0.2671 1.4475 6.8821 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182523820.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:20 Heat of formation + Delta-G solvation = -39.030980 kcal Electronic energy + Delta-G solvation = -30197.197020 eV Core-core repulsion = 26096.657729 eV Total energy + Delta-G solvation = -4100.539290 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.79604 -39.39084 -38.81596 -36.65849 -35.31705 -34.77620 -32.74353 -31.80139 -31.17726 -30.31300 -29.44335 -28.59397 -27.96740 -25.71543 -23.60136 -23.20123 -22.94618 -21.89658 -21.04040 -20.42165 -18.53424 -17.64604 -17.23424 -16.89754 -16.40093 -16.34435 -15.95252 -15.79152 -15.30454 -15.01253 -14.64122 -14.36252 -14.03016 -13.91833 -13.65240 -13.56641 -13.44137 -13.23604 -13.14691 -13.02963 -12.77224 -12.45635 -12.44614 -12.35584 -12.10632 -12.00655 -11.81133 -11.60455 -11.36909 -11.31058 -11.03780 -10.93094 -10.69800 -10.57398 -10.46905 -10.16754 -10.13105 -9.51853 -8.98606 -8.86365 -8.56732 -8.30067 -8.23798 -7.67416 -6.06769 -4.05159 1.15672 1.31970 2.25490 2.72130 3.31030 3.36948 3.39157 3.40962 3.60054 3.79115 4.25127 4.39088 4.41909 4.64437 4.71302 4.82662 4.88218 4.98819 4.99589 5.10863 5.16296 5.25445 5.27637 5.28559 5.33624 5.42384 5.45064 5.46433 5.51483 5.60202 5.64087 5.72867 5.79872 5.91996 6.00159 6.04553 6.14027 6.17228 6.23024 6.41737 6.42207 6.54488 6.73021 6.92186 6.95636 7.01921 7.07410 7.40155 7.43623 7.64089 7.73308 8.30973 8.49593 8.95371 9.05208 9.53965 11.06600 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.002101 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.747671 B =13321.434837 C =13928.249380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.217 3.783 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.877 3.123 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.508 3.492 14 O -0.527 6.527 15 C 0.042 3.958 16 N -0.664 5.664 17 C 0.124 3.876 18 H 0.086 0.914 19 C -0.179 4.179 20 C -0.044 4.044 21 C -0.107 4.107 22 C -0.102 4.102 23 C -0.151 4.151 24 C 0.136 3.864 25 N -0.674 5.674 26 C 0.507 3.493 27 C -0.171 4.171 28 O -0.525 6.525 29 C -0.115 4.115 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.029 0.971 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.353 0.647 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.121 0.879 47 H 0.410 0.590 48 H 0.097 0.903 49 H 0.096 0.904 50 H 0.081 0.919 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.861 -1.413 26.534 30.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.096 3.904 5 C -0.565 4.565 6 H 0.091 0.909 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.293 3.707 14 O -0.403 6.403 15 C -0.090 4.090 16 N -0.297 5.297 17 C 0.013 3.987 18 H 0.104 0.896 19 C -0.238 4.238 20 C -0.046 4.046 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.171 4.171 24 C 0.043 3.957 25 N -0.320 5.320 26 C 0.296 3.704 27 C -0.231 4.231 28 O -0.400 6.400 29 C -0.136 4.136 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.174 0.826 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.144 0.856 45 H 0.143 0.857 46 H 0.139 0.861 47 H 0.246 0.754 48 H 0.116 0.884 49 H 0.115 0.885 50 H 0.100 0.900 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.672 -1.149 26.118 29.980 hybrid contribution -0.005 0.285 -0.455 0.537 sum -14.677 -0.865 25.664 29.577 Atomic orbital electron populations 1.22239 0.96794 1.01518 1.02290 1.21432 0.93398 0.83943 1.03005 1.47925 1.64499 1.13329 1.06988 1.19625 0.97192 0.93418 0.80116 1.21330 0.95371 1.32769 1.07044 0.90859 1.24863 0.95015 0.95843 0.97387 1.69898 1.15143 1.45068 1.23573 0.86841 0.81467 0.81627 0.79684 1.19911 1.21137 1.19094 1.20198 0.78561 0.87044 0.84851 1.90673 1.44949 1.17772 1.86939 1.21912 1.02291 0.94574 0.90245 1.60253 1.32875 1.37081 0.99448 1.20430 0.98186 0.92376 0.87669 0.89604 1.22498 0.98294 1.00686 1.02351 1.19602 0.95047 0.95272 0.94635 1.21000 1.00206 0.93144 0.98191 1.20937 0.97327 0.99244 0.94505 1.20811 0.97630 0.97544 1.01113 1.17625 0.91947 0.95931 0.90187 1.43627 1.37245 1.10177 1.40914 1.21007 0.85805 0.82108 0.81522 1.21894 0.97226 1.04606 0.99357 1.90763 1.48129 1.42964 1.58158 1.20871 0.99429 0.99716 0.93535 0.92038 0.92917 0.92226 0.89775 0.91546 0.95349 0.94600 0.92611 0.92606 0.88728 0.82633 0.91626 0.92092 0.91954 0.85583 0.85686 0.86121 0.75448 0.88417 0.88528 0.90006 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.11 1.65 5.93 -4.04 -0.02 1.63 16 3 N -0.59 -12.23 2.46 -175.06 -0.43 -12.66 16 4 C 0.22 5.36 4.23 -5.19 -0.02 5.34 16 5 C -0.53 -15.20 9.94 -34.44 -0.34 -15.55 16 6 H 0.07 2.31 8.06 -52.48 -0.42 1.89 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 9 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 10 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 13 C 0.51 10.37 7.71 -10.99 -0.08 10.29 16 14 O -0.53 -13.07 15.78 5.55 0.09 -12.99 16 15 C 0.04 0.63 4.52 -4.98 -0.02 0.60 16 16 N -0.66 -9.66 5.33 -109.22 -0.58 -10.24 16 17 C 0.12 1.49 2.79 -68.87 -0.19 1.30 16 18 H 0.09 0.99 7.66 -51.93 -0.40 0.59 16 19 C -0.18 -1.97 9.14 37.15 0.34 -1.63 16 20 C -0.04 -0.55 4.95 -104.65 -0.52 -1.07 16 21 C -0.11 -1.29 9.32 -39.55 -0.37 -1.66 16 22 C -0.10 -1.06 10.04 -39.61 -0.40 -1.45 16 23 C -0.15 -1.43 9.96 -39.39 -0.39 -1.82 16 24 C 0.14 1.42 6.28 -83.69 -0.53 0.90 16 25 N -0.67 -4.95 5.34 -9.86 -0.05 -5.00 16 26 C 0.51 4.22 7.68 -10.98 -0.08 4.14 16 27 C -0.17 -0.62 10.31 36.01 0.37 -0.25 16 28 O -0.52 -6.76 14.79 5.55 0.08 -6.68 16 29 C -0.12 -1.40 8.28 -39.39 -0.33 -1.73 16 30 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 31 H 0.05 0.65 7.22 -51.93 -0.37 0.27 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.37 8.07 -51.93 -0.42 0.96 16 34 H 0.07 0.87 6.44 -51.93 -0.33 0.53 16 35 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 36 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.06 0.75 6.69 -51.93 -0.35 0.40 16 39 H 0.09 1.24 7.10 -51.92 -0.37 0.87 16 40 H 0.35 5.42 7.51 -39.29 -0.30 5.12 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.64 7.45 -51.93 -0.39 0.26 16 43 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 44 H 0.13 1.54 7.24 -52.48 -0.38 1.16 16 45 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 46 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 47 H 0.41 1.51 8.82 -40.82 -0.36 1.15 16 48 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 51 H 0.13 1.67 6.39 -52.49 -0.34 1.34 16 LS Contribution 416.69 15.07 6.28 6.28 Total: -1.00 -37.56 416.69 -8.94 -46.50 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -8.12 Total: 5.46 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -2.31 Total: -0.76 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.29 Total: -54.97 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: 0.17 Total: -19.66 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -37.56 -8.94 -46.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182523820.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.470 kcal (2) G-P(sol) polarization free energy of solvation -37.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds