Wall clock time and date at job start Wed Apr 1 2020 05:32:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 N 1.46493 * 109.46829 * 2 1
4 4 C 1.46501 * 120.00032 * 269.99994 * 3 2 1
5 5 C 1.50698 * 109.47340 * 269.99911 * 4 3 2
6 6 H 1.08009 * 119.99431 * 0.02562 * 5 4 3
7 7 C 1.37873 * 120.00434 * 179.97438 * 5 4 3
8 8 N 1.31515 * 120.00373 * 180.02562 * 7 5 4
9 9 Si 1.86800 * 119.99645 * 0.02562 * 7 5 4
10 10 H 1.48506 * 109.47111 * 90.00458 * 9 7 5
11 11 H 1.48506 * 109.47058 * 209.99997 * 9 7 5
12 12 H 1.48495 * 109.47416 * 330.00029 * 9 7 5
13 13 C 1.34779 * 120.00020 * 90.00132 * 3 2 1
14 14 O 1.21287 * 119.99841 * 180.02562 * 13 3 2
15 15 C 1.50693 * 120.00163 * 359.97438 * 13 3 2
16 16 N 1.46903 * 109.47569 * 180.02562 * 15 13 3
17 17 C 1.46896 * 111.00132 * 180.02562 * 16 15 13
18 18 H 1.09003 * 109.47232 * 324.99330 * 17 16 15
19 19 C 1.52993 * 109.47327 * 85.00052 * 17 16 15
20 20 C 1.50705 * 109.47067 * 205.00198 * 17 16 15
21 21 C 1.38303 * 119.96138 * 320.01672 * 20 17 16
22 22 C 1.38254 * 120.14312 * 180.02562 * 21 20 17
23 23 C 1.38131 * 120.07060 * 359.96537 * 22 21 20
24 24 C 1.38858 * 119.92810 * 359.76094 * 23 22 21
25 25 N 1.39924 * 120.07215 * 180.27846 * 24 23 22
26 26 C 1.34777 * 119.99770 * 213.51425 * 25 24 23
27 27 C 1.50702 * 119.99884 * 185.27280 * 26 25 24
28 28 O 1.21284 * 120.00318 * 5.27975 * 26 25 24
29 29 C 1.38088 * 119.96847 * 140.00050 * 20 17 16
30 30 H 1.09008 * 109.46875 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47314 * 299.99772 * 1 2 3
32 32 H 1.08996 * 109.47263 * 60.00330 * 1 2 3
33 33 H 1.09000 * 109.47030 * 239.99773 * 2 1 3
34 34 H 1.09000 * 109.46953 * 120.00079 * 2 1 3
35 35 H 1.09002 * 109.47307 * 30.00084 * 4 3 2
36 36 H 1.09002 * 109.46849 * 150.00256 * 4 3 2
37 37 H 0.96994 * 120.00106 * 180.02562 * 8 7 5
38 38 H 1.08998 * 109.47132 * 59.99741 * 15 13 3
39 39 H 1.09008 * 109.47195 * 300.00326 * 15 13 3
40 40 H 1.00900 * 110.99838 * 303.95312 * 16 15 13
41 41 H 1.08997 * 109.47335 * 180.02562 * 19 17 16
42 42 H 1.09001 * 109.47124 * 299.99719 * 19 17 16
43 43 H 1.09001 * 109.47335 * 59.99973 * 19 17 16
44 44 H 1.08008 * 119.92948 * 0.02562 * 21 20 17
45 45 H 1.08005 * 119.96708 * 179.97438 * 22 21 20
46 46 H 1.08002 * 120.03675 * 180.02562 * 23 22 21
47 47 H 0.97001 * 119.99708 * 33.52217 * 25 24 23
48 48 H 1.09002 * 109.46739 * 90.00158 * 27 26 25
49 49 H 1.09002 * 109.47306 * 210.00657 * 27 26 25
50 50 H 1.09005 * 109.47416 * 330.00692 * 27 26 25
51 51 H 1.07996 * 120.03145 * 359.97318 * 29 20 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2625 2.0718 -1.2687
5 6 3.6857 1.8351 -1.7038
6 1 4.3426 1.2303 -1.0961
7 6 4.1490 2.3897 -2.8780
8 7 5.3910 2.1828 -3.2579
9 14 3.0126 3.4352 -3.9292
10 1 3.1161 4.8555 -3.5082
11 1 3.4055 3.3120 -5.3560
12 1 1.6130 2.9692 -3.7592
13 6 2.2429 2.0165 1.1672
14 8 2.6467 3.1602 1.1672
15 6 1.9913 1.3064 2.4723
16 7 2.3090 2.2065 3.5889
17 6 2.0757 1.5462 4.8802
18 1 1.2157 0.8815 4.7982
19 6 3.3128 0.7343 5.2688
20 6 1.8064 2.5878 5.9356
21 6 2.5329 3.7646 5.9458
22 6 2.2894 4.7224 6.9126
23 6 1.3186 4.5070 7.8713
24 6 0.5836 3.3289 7.8604
25 7 -0.4045 3.1101 8.8267
26 6 -0.6405 1.8624 9.2785
27 6 -1.7821 1.6087 10.2291
28 8 0.0658 0.9439 8.9202
29 6 0.8345 2.3663 6.8911
30 1 -0.3633 -1.0278 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 1.8934 -0.5139 -0.8900
34 1 1.8934 -0.5138 0.8900
35 1 1.5817 1.6877 -2.0284
36 1 2.0955 3.1410 -1.1383
37 1 5.7170 2.5732 -4.0837
38 1 2.6212 0.4187 2.5302
39 1 0.9432 1.0125 2.5298
40 1 3.2573 2.5446 3.5222
41 1 3.1395 0.2440 6.2267
42 1 3.5075 -0.0190 4.5055
43 1 4.1727 1.3991 5.3508
44 1 3.2922 3.9357 5.1969
45 1 2.8587 5.6402 6.9182
46 1 1.1286 5.2558 8.6261
47 1 -0.9197 3.8563 9.1712
48 1 -2.6832 1.3772 9.6611
49 1 -1.5351 0.7679 10.8773
50 1 -1.9537 2.4975 10.8364
51 1 0.2671 1.4475 6.8821
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000182523820.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:32:20
Heat of formation + Delta-G solvation = -39.030980 kcal
Electronic energy + Delta-G solvation = -30197.197020 eV
Core-core repulsion = 26096.657729 eV
Total energy + Delta-G solvation = -4100.539290 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.79604 -39.39084 -38.81596 -36.65849 -35.31705 -34.77620 -32.74353 -31.80139
-31.17726 -30.31300 -29.44335 -28.59397 -27.96740 -25.71543 -23.60136 -23.20123
-22.94618 -21.89658 -21.04040 -20.42165 -18.53424 -17.64604 -17.23424 -16.89754
-16.40093 -16.34435 -15.95252 -15.79152 -15.30454 -15.01253 -14.64122 -14.36252
-14.03016 -13.91833 -13.65240 -13.56641 -13.44137 -13.23604 -13.14691 -13.02963
-12.77224 -12.45635 -12.44614 -12.35584 -12.10632 -12.00655 -11.81133 -11.60455
-11.36909 -11.31058 -11.03780 -10.93094 -10.69800 -10.57398 -10.46905 -10.16754
-10.13105 -9.51853 -8.98606 -8.86365 -8.56732 -8.30067 -8.23798 -7.67416
-6.06769 -4.05159 1.15672 1.31970 2.25490 2.72130 3.31030 3.36948
3.39157 3.40962 3.60054 3.79115 4.25127 4.39088 4.41909 4.64437
4.71302 4.82662 4.88218 4.98819 4.99589 5.10863 5.16296 5.25445
5.27637 5.28559 5.33624 5.42384 5.45064 5.46433 5.51483 5.60202
5.64087 5.72867 5.79872 5.91996 6.00159 6.04553 6.14027 6.17228
6.23024 6.41737 6.42207 6.54488 6.73021 6.92186 6.95636 7.01921
7.07410 7.40155 7.43623 7.64089 7.73308 8.30973 8.49593 8.95371
9.05208 9.53965 11.06600
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.017510 B = 0.002101 C = 0.002010
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1598.747671 B =13321.434837 C =13928.249380
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.106 3.894
3 N -0.595 5.595
4 C 0.217 3.783
5 C -0.527 4.527
6 H 0.073 0.927
7 C 0.071 3.929
8 N -0.898 5.898
9 Si 0.877 3.123
10 H -0.274 1.274
11 H -0.285 1.285
12 H -0.266 1.266
13 C 0.508 3.492
14 O -0.527 6.527
15 C 0.042 3.958
16 N -0.664 5.664
17 C 0.124 3.876
18 H 0.086 0.914
19 C -0.179 4.179
20 C -0.044 4.044
21 C -0.107 4.107
22 C -0.102 4.102
23 C -0.151 4.151
24 C 0.136 3.864
25 N -0.674 5.674
26 C 0.507 3.493
27 C -0.171 4.171
28 O -0.525 6.525
29 C -0.115 4.115
30 H 0.061 0.939
31 H 0.052 0.948
32 H 0.059 0.941
33 H 0.084 0.916
34 H 0.066 0.934
35 H 0.029 0.971
36 H 0.036 0.964
37 H 0.264 0.736
38 H 0.056 0.944
39 H 0.095 0.905
40 H 0.353 0.647
41 H 0.065 0.935
42 H 0.060 0.940
43 H 0.061 0.939
44 H 0.126 0.874
45 H 0.125 0.875
46 H 0.121 0.879
47 H 0.410 0.590
48 H 0.097 0.903
49 H 0.096 0.904
50 H 0.081 0.919
51 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.861 -1.413 26.534 30.445
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.018 4.018
3 N -0.327 5.327
4 C 0.096 3.904
5 C -0.565 4.565
6 H 0.091 0.909
7 C -0.131 4.131
8 N -0.537 5.537
9 Si 0.704 3.296
10 H -0.199 1.199
11 H -0.211 1.211
12 H -0.191 1.191
13 C 0.293 3.707
14 O -0.403 6.403
15 C -0.090 4.090
16 N -0.297 5.297
17 C 0.013 3.987
18 H 0.104 0.896
19 C -0.238 4.238
20 C -0.046 4.046
21 C -0.125 4.125
22 C -0.120 4.120
23 C -0.171 4.171
24 C 0.043 3.957
25 N -0.320 5.320
26 C 0.296 3.704
27 C -0.231 4.231
28 O -0.400 6.400
29 C -0.136 4.136
30 H 0.080 0.920
31 H 0.071 0.929
32 H 0.078 0.922
33 H 0.102 0.898
34 H 0.085 0.915
35 H 0.047 0.953
36 H 0.054 0.946
37 H 0.074 0.926
38 H 0.074 0.926
39 H 0.113 0.887
40 H 0.174 0.826
41 H 0.084 0.916
42 H 0.079 0.921
43 H 0.080 0.920
44 H 0.144 0.856
45 H 0.143 0.857
46 H 0.139 0.861
47 H 0.246 0.754
48 H 0.116 0.884
49 H 0.115 0.885
50 H 0.100 0.900
51 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -14.672 -1.149 26.118 29.980
hybrid contribution -0.005 0.285 -0.455 0.537
sum -14.677 -0.865 25.664 29.577
Atomic orbital electron populations
1.22239 0.96794 1.01518 1.02290 1.21432 0.93398 0.83943 1.03005
1.47925 1.64499 1.13329 1.06988 1.19625 0.97192 0.93418 0.80116
1.21330 0.95371 1.32769 1.07044 0.90859 1.24863 0.95015 0.95843
0.97387 1.69898 1.15143 1.45068 1.23573 0.86841 0.81467 0.81627
0.79684 1.19911 1.21137 1.19094 1.20198 0.78561 0.87044 0.84851
1.90673 1.44949 1.17772 1.86939 1.21912 1.02291 0.94574 0.90245
1.60253 1.32875 1.37081 0.99448 1.20430 0.98186 0.92376 0.87669
0.89604 1.22498 0.98294 1.00686 1.02351 1.19602 0.95047 0.95272
0.94635 1.21000 1.00206 0.93144 0.98191 1.20937 0.97327 0.99244
0.94505 1.20811 0.97630 0.97544 1.01113 1.17625 0.91947 0.95931
0.90187 1.43627 1.37245 1.10177 1.40914 1.21007 0.85805 0.82108
0.81522 1.21894 0.97226 1.04606 0.99357 1.90763 1.48129 1.42964
1.58158 1.20871 0.99429 0.99716 0.93535 0.92038 0.92917 0.92226
0.89775 0.91546 0.95349 0.94600 0.92611 0.92606 0.88728 0.82633
0.91626 0.92092 0.91954 0.85583 0.85686 0.86121 0.75448 0.88417
0.88528 0.90006 0.85167
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16
2 C 0.11 1.65 5.93 -4.04 -0.02 1.63 16
3 N -0.59 -12.23 2.46 -175.06 -0.43 -12.66 16
4 C 0.22 5.36 4.23 -5.19 -0.02 5.34 16
5 C -0.53 -15.20 9.94 -34.44 -0.34 -15.55 16
6 H 0.07 2.31 8.06 -52.48 -0.42 1.89 16
7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16
8 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16
9 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16
10 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16
11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
12 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16
13 C 0.51 10.37 7.71 -10.99 -0.08 10.29 16
14 O -0.53 -13.07 15.78 5.55 0.09 -12.99 16
15 C 0.04 0.63 4.52 -4.98 -0.02 0.60 16
16 N -0.66 -9.66 5.33 -109.22 -0.58 -10.24 16
17 C 0.12 1.49 2.79 -68.87 -0.19 1.30 16
18 H 0.09 0.99 7.66 -51.93 -0.40 0.59 16
19 C -0.18 -1.97 9.14 37.15 0.34 -1.63 16
20 C -0.04 -0.55 4.95 -104.65 -0.52 -1.07 16
21 C -0.11 -1.29 9.32 -39.55 -0.37 -1.66 16
22 C -0.10 -1.06 10.04 -39.61 -0.40 -1.45 16
23 C -0.15 -1.43 9.96 -39.39 -0.39 -1.82 16
24 C 0.14 1.42 6.28 -83.69 -0.53 0.90 16
25 N -0.67 -4.95 5.34 -9.86 -0.05 -5.00 16
26 C 0.51 4.22 7.68 -10.98 -0.08 4.14 16
27 C -0.17 -0.62 10.31 36.01 0.37 -0.25 16
28 O -0.52 -6.76 14.79 5.55 0.08 -6.68 16
29 C -0.12 -1.40 8.28 -39.39 -0.33 -1.73 16
30 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16
31 H 0.05 0.65 7.22 -51.93 -0.37 0.27 16
32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16
33 H 0.08 1.37 8.07 -51.93 -0.42 0.96 16
34 H 0.07 0.87 6.44 -51.93 -0.33 0.53 16
35 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16
36 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16
37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16
38 H 0.06 0.75 6.69 -51.93 -0.35 0.40 16
39 H 0.09 1.24 7.10 -51.92 -0.37 0.87 16
40 H 0.35 5.42 7.51 -39.29 -0.30 5.12 16
41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
42 H 0.06 0.64 7.45 -51.93 -0.39 0.26 16
43 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16
44 H 0.13 1.54 7.24 -52.48 -0.38 1.16 16
45 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16
46 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16
47 H 0.41 1.51 8.82 -40.82 -0.36 1.15 16
48 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16
49 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16
50 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16
51 H 0.13 1.67 6.39 -52.49 -0.34 1.34 16
LS Contribution 416.69 15.07 6.28 6.28
Total: -1.00 -37.56 416.69 -8.94 -46.50
By element:
Atomic # 1 Polarization: 13.58 SS G_CDS: -8.12 Total: 5.46 kcal
Atomic # 6 Polarization: 1.54 SS G_CDS: -2.31 Total: -0.76 kcal
Atomic # 7 Polarization: -54.68 SS G_CDS: -0.29 Total: -54.97 kcal
Atomic # 8 Polarization: -19.83 SS G_CDS: 0.17 Total: -19.66 kcal
Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal
Total LS contribution 6.28 Total: 6.28 kcal
Total: -37.56 -8.94 -46.50 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000182523820.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.470 kcal
(2) G-P(sol) polarization free energy of solvation -37.564 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.093 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.501 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.031 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds