Wall clock time and date at job start Wed Apr 1 2020 05:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46493 * 109.46829 * 2 1 4 4 C 1.46501 * 120.00032 * 269.99994 * 3 2 1 5 5 C 1.50698 * 109.47340 * 269.99911 * 4 3 2 6 6 H 1.08009 * 119.99431 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00434 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00373 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99645 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47111 * 90.00458 * 9 7 5 11 11 H 1.48506 * 109.47058 * 209.99997 * 9 7 5 12 12 H 1.48495 * 109.47416 * 330.00029 * 9 7 5 13 13 C 1.34779 * 120.00020 * 90.00132 * 3 2 1 14 14 O 1.21287 * 119.99841 * 180.02562 * 13 3 2 15 15 C 1.50693 * 120.00163 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.47569 * 180.02562 * 15 13 3 17 17 C 1.46896 * 111.00132 * 180.02562 * 16 15 13 18 18 H 1.09003 * 109.47232 * 324.99330 * 17 16 15 19 19 C 1.52993 * 109.47327 * 85.00052 * 17 16 15 20 20 C 1.50705 * 109.47067 * 205.00198 * 17 16 15 21 21 C 1.38303 * 119.96138 * 320.01672 * 20 17 16 22 22 C 1.38254 * 120.14312 * 180.02562 * 21 20 17 23 23 C 1.38131 * 120.07060 * 359.96537 * 22 21 20 24 24 C 1.38858 * 119.92810 * 359.76094 * 23 22 21 25 25 N 1.39924 * 120.07215 * 180.27846 * 24 23 22 26 26 C 1.34777 * 119.99770 * 213.51425 * 25 24 23 27 27 C 1.50702 * 119.99884 * 185.27280 * 26 25 24 28 28 O 1.21284 * 120.00318 * 5.27975 * 26 25 24 29 29 C 1.38088 * 119.96847 * 140.00050 * 20 17 16 30 30 H 1.09008 * 109.46875 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47314 * 299.99772 * 1 2 3 32 32 H 1.08996 * 109.47263 * 60.00330 * 1 2 3 33 33 H 1.09000 * 109.47030 * 239.99773 * 2 1 3 34 34 H 1.09000 * 109.46953 * 120.00079 * 2 1 3 35 35 H 1.09002 * 109.47307 * 30.00084 * 4 3 2 36 36 H 1.09002 * 109.46849 * 150.00256 * 4 3 2 37 37 H 0.96994 * 120.00106 * 180.02562 * 8 7 5 38 38 H 1.08998 * 109.47132 * 59.99741 * 15 13 3 39 39 H 1.09008 * 109.47195 * 300.00326 * 15 13 3 40 40 H 1.00900 * 110.99838 * 303.95312 * 16 15 13 41 41 H 1.08997 * 109.47335 * 180.02562 * 19 17 16 42 42 H 1.09001 * 109.47124 * 299.99719 * 19 17 16 43 43 H 1.09001 * 109.47335 * 59.99973 * 19 17 16 44 44 H 1.08008 * 119.92948 * 0.02562 * 21 20 17 45 45 H 1.08005 * 119.96708 * 179.97438 * 22 21 20 46 46 H 1.08002 * 120.03675 * 180.02562 * 23 22 21 47 47 H 0.97001 * 119.99708 * 33.52217 * 25 24 23 48 48 H 1.09002 * 109.46739 * 90.00158 * 27 26 25 49 49 H 1.09002 * 109.47306 * 210.00657 * 27 26 25 50 50 H 1.09005 * 109.47416 * 330.00692 * 27 26 25 51 51 H 1.07996 * 120.03145 * 359.97318 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0961 7 6 4.1490 2.3897 -2.8780 8 7 5.3910 2.1828 -3.2579 9 14 3.0126 3.4352 -3.9292 10 1 3.1161 4.8555 -3.5082 11 1 3.4055 3.3120 -5.3560 12 1 1.6130 2.9692 -3.7592 13 6 2.2429 2.0165 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9913 1.3064 2.4723 16 7 2.3090 2.2065 3.5889 17 6 2.0757 1.5462 4.8802 18 1 1.2157 0.8815 4.7982 19 6 3.3128 0.7343 5.2688 20 6 1.8064 2.5878 5.9356 21 6 2.5329 3.7646 5.9458 22 6 2.2894 4.7224 6.9126 23 6 1.3186 4.5070 7.8713 24 6 0.5836 3.3289 7.8604 25 7 -0.4045 3.1101 8.8267 26 6 -0.6405 1.8624 9.2785 27 6 -1.7821 1.6087 10.2291 28 8 0.0658 0.9439 8.9202 29 6 0.8345 2.3663 6.8911 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.5817 1.6877 -2.0284 36 1 2.0955 3.1410 -1.1383 37 1 5.7170 2.5732 -4.0837 38 1 2.6212 0.4187 2.5302 39 1 0.9432 1.0125 2.5298 40 1 3.2573 2.5446 3.5222 41 1 3.1395 0.2440 6.2267 42 1 3.5075 -0.0190 4.5055 43 1 4.1727 1.3991 5.3508 44 1 3.2922 3.9357 5.1969 45 1 2.8587 5.6402 6.9182 46 1 1.1286 5.2558 8.6261 47 1 -0.9197 3.8563 9.1712 48 1 -2.6832 1.3772 9.6611 49 1 -1.5351 0.7679 10.8773 50 1 -1.9537 2.4975 10.8364 51 1 0.2671 1.4475 6.8821 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182523820.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:19 Heat of formation + Delta-G solvation = -66.081168 kcal Electronic energy + Delta-G solvation = -30198.370004 eV Core-core repulsion = 26096.657729 eV Total energy + Delta-G solvation = -4101.712274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.52761 -40.82639 -39.77090 -37.69124 -36.89933 -35.59538 -34.85491 -32.90602 -31.85410 -31.73429 -30.41589 -29.59222 -29.23738 -27.11474 -24.66698 -24.35174 -24.00902 -23.51528 -21.81437 -21.21051 -20.00254 -19.10869 -18.58433 -17.97093 -17.68004 -17.37399 -17.08536 -16.72717 -16.56309 -16.34659 -15.86248 -15.53823 -15.07588 -14.92761 -14.83559 -14.70735 -14.62398 -14.37140 -14.28996 -14.11601 -13.78897 -13.54410 -13.42873 -13.35544 -13.28016 -13.07943 -13.00984 -12.92645 -12.62150 -12.54996 -12.36907 -12.23948 -12.03845 -11.91009 -11.89619 -11.74123 -11.34580 -10.89568 -10.83349 -10.63150 -9.73133 -9.42246 -9.37051 -9.03856 -8.34254 -6.38813 0.34138 0.47405 1.31729 1.36032 1.44295 1.62110 1.82526 2.14873 2.22625 2.30540 2.84567 2.99953 3.22819 3.67763 3.71168 3.91210 3.98979 4.07934 4.16919 4.21993 4.26644 4.32347 4.36646 4.45181 4.45517 4.49786 4.61788 4.64434 4.65077 4.67894 4.75507 4.81417 4.82567 4.92066 4.99938 5.01606 5.06505 5.13340 5.15920 5.36623 5.38526 5.43752 5.46978 5.58692 5.61793 5.68271 5.98682 6.12294 6.24472 6.25095 6.48008 6.62017 6.74331 7.16617 7.21946 7.45798 8.82529 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.002101 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.747671 B =13321.434837 C =13928.249380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.227 3.773 5 C -0.533 4.533 6 H 0.029 0.971 7 C 0.010 3.990 8 N -0.944 5.944 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.274 1.274 12 H -0.240 1.240 13 C 0.497 3.503 14 O -0.582 6.582 15 C 0.057 3.943 16 N -0.675 5.675 17 C 0.129 3.871 18 H 0.093 0.907 19 C -0.173 4.173 20 C -0.057 4.057 21 C -0.128 4.128 22 C -0.106 4.106 23 C -0.146 4.146 24 C 0.131 3.869 25 N -0.662 5.662 26 C 0.501 3.499 27 C -0.162 4.162 28 O -0.577 6.577 29 C -0.131 4.131 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.016 0.984 37 H 0.268 0.732 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.345 0.655 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.116 0.884 45 H 0.144 0.856 46 H 0.154 0.846 47 H 0.429 0.571 48 H 0.112 0.888 49 H 0.095 0.905 50 H 0.114 0.886 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.028 -1.324 28.252 33.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.333 5.333 4 C 0.104 3.896 5 C -0.572 4.572 6 H 0.047 0.953 7 C -0.188 4.188 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.199 1.199 12 H -0.163 1.163 13 C 0.286 3.714 14 O -0.461 6.461 15 C -0.075 4.075 16 N -0.307 5.307 17 C 0.019 3.981 18 H 0.112 0.888 19 C -0.232 4.232 20 C -0.059 4.059 21 C -0.147 4.147 22 C -0.124 4.124 23 C -0.166 4.166 24 C 0.037 3.963 25 N -0.309 5.309 26 C 0.291 3.709 27 C -0.221 4.221 28 O -0.456 6.456 29 C -0.152 4.152 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.139 0.861 40 H 0.164 0.836 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.134 0.866 45 H 0.162 0.838 46 H 0.171 0.829 47 H 0.268 0.732 48 H 0.131 0.869 49 H 0.113 0.887 50 H 0.132 0.868 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.901 -1.089 27.877 33.148 hybrid contribution 1.040 0.234 -0.884 1.385 sum -16.861 -0.856 26.994 31.838 Atomic orbital electron populations 1.22159 0.94049 1.03602 1.02043 1.21769 0.95579 0.81157 1.03908 1.48049 1.64400 1.15150 1.05748 1.19265 0.94769 0.92942 0.82622 1.21548 0.97025 1.31962 1.06621 0.95285 1.25849 0.96738 0.97238 0.98997 1.70046 1.17350 1.46586 1.24482 0.85719 0.80436 0.79001 0.77808 1.20276 1.19928 1.16287 1.21189 0.77136 0.86671 0.86409 1.90637 1.47324 1.20327 1.87855 1.21850 1.04180 0.94246 0.87229 1.60255 1.32421 1.37706 1.00330 1.20428 0.98761 0.92437 0.86433 0.88845 1.22426 0.97668 1.00488 1.02587 1.19653 0.95585 0.95571 0.95044 1.21061 1.00642 0.93960 0.99021 1.21230 0.97629 0.99462 0.94079 1.21134 0.96530 0.97730 1.01198 1.17822 0.92522 0.95743 0.90239 1.43619 1.36510 1.10908 1.39861 1.21919 0.86112 0.81464 0.81361 1.21923 0.95419 1.06099 0.98632 1.90742 1.50236 1.44510 1.60150 1.20875 0.99786 1.00018 0.94527 0.88737 0.92126 0.93511 0.90926 0.88710 0.93527 0.96611 0.92305 0.90595 0.86080 0.83583 0.91378 0.91548 0.92446 0.86637 0.83829 0.82875 0.73153 0.86947 0.88672 0.86787 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 10.24 71.98 0.74 -2.89 16 2 C 0.10 2.89 5.93 86.38 0.51 3.41 16 3 N -0.60 -24.70 2.46 -826.15 -2.03 -26.73 16 4 C 0.23 11.28 4.23 85.63 0.36 11.64 16 5 C -0.53 -31.82 9.94 25.60 0.25 -31.56 16 6 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 7 C 0.01 0.58 5.47 84.65 0.46 1.04 16 8 N -0.94 -60.37 13.96 21.45 0.30 -60.07 16 9 Si 0.95 45.35 27.47 68.60 1.88 47.23 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.24 -10.35 6.54 99.48 0.65 -9.70 16 13 C 0.50 20.52 7.71 87.65 0.68 21.19 16 14 O -0.58 -29.89 15.78 -3.05 -0.05 -29.94 16 15 C 0.06 1.63 4.52 85.55 0.39 2.02 16 16 N -0.68 -19.74 5.33 -499.47 -2.66 -22.40 16 17 C 0.13 3.09 2.79 44.17 0.12 3.21 16 18 H 0.09 2.07 7.66 -2.39 -0.02 2.05 16 19 C -0.17 -3.77 9.14 71.98 0.66 -3.11 16 20 C -0.06 -1.44 4.95 -19.88 -0.10 -1.54 16 21 C -0.13 -3.15 9.32 22.29 0.21 -2.94 16 22 C -0.11 -2.10 10.04 22.25 0.22 -1.88 16 23 C -0.15 -2.48 9.96 22.39 0.22 -2.25 16 24 C 0.13 2.57 6.28 38.15 0.24 2.81 16 25 N -0.66 -8.35 5.34 -303.50 -1.62 -9.97 16 26 C 0.50 7.59 7.68 87.66 0.67 8.26 16 27 C -0.16 -0.73 10.31 71.24 0.73 0.00 16 28 O -0.58 -14.82 14.79 -3.04 -0.04 -14.87 16 29 C -0.13 -3.20 8.28 22.39 0.19 -3.01 16 30 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.06 1.29 7.22 -2.39 -0.02 1.27 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 34 H 0.09 2.24 6.44 -2.39 -0.02 2.23 16 35 H 0.05 2.15 7.13 -2.39 -0.02 2.13 16 36 H 0.02 0.85 6.85 -2.39 -0.02 0.84 16 37 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 38 H 0.08 1.90 6.69 -2.39 -0.02 1.89 16 39 H 0.12 2.86 7.10 -2.38 -0.02 2.84 16 40 H 0.34 11.03 7.51 -89.69 -0.67 10.35 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.35 7.45 -2.39 -0.02 1.33 16 43 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 44 H 0.12 3.00 7.24 -2.91 -0.02 2.98 16 45 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 46 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 47 H 0.43 1.82 8.82 -92.71 -0.82 1.01 16 48 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 49 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.11 -0.21 8.14 -2.38 -0.02 -0.23 16 51 H 0.12 3.12 6.39 -2.91 -0.02 3.10 16 Total: -1.00 -87.33 416.69 1.74 -85.59 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -0.60 Total: 26.76 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 6.56 Total: 4.39 kcal Atomic # 7 Polarization: -113.16 SS G_CDS: -6.01 Total: -119.17 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -0.09 Total: -44.80 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -87.33 1.74 -85.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182523820.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.508 kcal (2) G-P(sol) polarization free energy of solvation -87.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds