Wall clock time and date at job start Wed Apr 1 2020 05:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46905 * 109.46767 * 2 1 4 4 C 1.46898 * 110.99962 * 297.51342 * 3 2 1 5 5 C 1.50701 * 109.47154 * 292.35297 * 4 3 2 6 6 H 1.08004 * 120.00043 * 354.95633 * 5 4 3 7 7 C 1.37873 * 120.00416 * 174.96109 * 5 4 3 8 8 N 1.31524 * 119.99842 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00411 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47361 * 89.99761 * 9 7 5 11 11 H 1.48505 * 109.47414 * 209.99848 * 9 7 5 12 12 H 1.48503 * 109.47162 * 329.99606 * 9 7 5 13 13 C 1.46897 * 111.00194 * 61.46901 * 3 2 1 14 14 C 1.50703 * 109.47233 * 66.04154 * 13 3 2 15 15 O 1.21282 * 119.99949 * 359.97438 * 14 13 3 16 16 N 1.34773 * 119.99978 * 179.97438 * 14 13 3 17 17 C 1.46501 * 120.00021 * 0.02562 * 16 14 13 18 18 C 1.53000 * 109.46822 * 269.99728 * 17 16 14 19 19 C 1.50700 * 109.47003 * 180.02562 * 18 17 16 20 20 N 1.34777 * 119.99917 * 179.97438 * 19 18 17 21 21 O 1.21283 * 119.99852 * 359.97438 * 19 18 17 22 22 C 1.46505 * 119.99861 * 180.02562 * 16 14 13 23 23 C 1.50696 * 109.47225 * 90.00139 * 22 16 14 24 24 C 1.38236 * 120.00044 * 89.99653 * 23 22 16 25 25 C 1.38234 * 120.00194 * 179.97438 * 24 23 22 26 26 C 1.38237 * 119.99925 * 359.97438 * 25 24 23 27 27 C 1.38243 * 119.99932 * 0.27532 * 26 25 24 28 28 C 1.38231 * 119.99910 * 359.51006 * 27 26 25 29 29 H 1.09007 * 109.46811 * 299.08303 * 1 2 3 30 30 H 1.08990 * 109.47550 * 59.08264 * 1 2 3 31 31 H 1.09007 * 109.46942 * 179.09162 * 1 2 3 32 32 H 1.08996 * 109.46801 * 239.99943 * 2 1 3 33 33 H 1.08999 * 109.46883 * 119.99984 * 2 1 3 34 34 H 1.09003 * 109.47253 * 52.34990 * 4 3 2 35 35 H 1.08996 * 109.47040 * 172.35564 * 4 3 2 36 36 H 0.96991 * 119.99820 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.46991 * 306.04611 * 13 3 2 38 38 H 1.08997 * 109.47475 * 186.04289 * 13 3 2 39 39 H 1.08992 * 109.46918 * 29.99681 * 17 16 14 40 40 H 1.09000 * 109.46512 * 149.99993 * 17 16 14 41 41 H 1.09003 * 109.47334 * 300.00200 * 18 17 16 42 42 H 1.08997 * 109.47185 * 59.99860 * 18 17 16 43 43 H 0.96998 * 119.99956 * 0.02562 * 20 19 18 44 44 H 0.97003 * 119.99864 * 179.97438 * 20 19 18 45 45 H 1.09000 * 109.46692 * 330.00114 * 22 16 14 46 46 H 1.08999 * 109.46753 * 210.00145 * 22 16 14 47 47 H 1.07998 * 120.00199 * 359.97438 * 24 23 22 48 48 H 1.08000 * 120.00184 * 180.02562 * 25 24 23 49 49 H 1.08000 * 120.00331 * 180.02562 * 26 25 24 50 50 H 1.08000 * 120.00149 * 179.72763 * 27 26 25 51 51 H 1.07999 * 120.00475 * 180.27378 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.5978 2.0925 -1.2163 5 6 2.2999 1.5002 -2.4110 6 1 3.0504 0.7361 -2.2723 7 6 1.9842 1.9339 -3.6812 8 7 1.0699 2.8641 -3.8502 9 14 2.8550 1.2002 -5.1620 10 1 2.0977 0.0181 -5.6460 11 1 2.9328 2.2150 -6.2435 12 1 4.2267 0.7844 -4.7738 13 6 1.5776 2.0997 1.2048 14 6 2.2292 1.4891 2.4187 15 8 2.9870 0.5505 2.2926 16 7 1.9700 1.9858 3.6444 17 6 1.0542 3.1192 3.7968 18 6 1.8435 4.4272 3.7140 19 6 0.9017 5.5931 3.8714 20 7 1.3771 6.8536 3.8322 21 8 -0.2842 5.3970 4.0333 22 6 2.6040 1.3925 4.8244 23 6 3.9127 2.0889 5.0952 24 6 3.9479 3.1978 5.9198 25 6 5.1484 3.8363 6.1686 26 6 6.3139 3.3656 5.5932 27 6 6.2779 2.2598 4.7644 28 6 5.0780 1.6186 4.5191 29 1 -0.3633 0.4996 0.8982 30 1 -0.3634 0.5280 -0.8815 31 1 -0.3633 -1.0276 -0.0163 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5197 1.9901 -1.3408 35 1 1.8550 3.1482 -1.1303 36 1 0.8476 3.1689 -4.7437 37 1 0.4942 2.0220 1.2964 38 1 1.8615 3.1494 1.1294 39 1 0.3090 3.0935 3.0019 40 1 0.5560 3.0560 4.7642 41 1 2.5889 4.4529 4.5090 42 1 2.3419 4.4903 2.7467 43 1 2.3255 7.0104 3.7023 44 1 0.7708 7.6040 3.9331 45 1 2.7865 0.3331 4.6446 46 1 1.9464 1.5068 5.6862 47 1 3.0375 3.5653 6.3697 48 1 5.1760 4.7024 6.8132 49 1 7.2519 3.8642 5.7878 50 1 7.1877 1.8946 4.3113 51 1 5.0505 0.7520 3.8752 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266925931.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:39 Heat of formation + Delta-G solvation = -62.716648 kcal Electronic energy + Delta-G solvation = -31645.243443 eV Core-core repulsion = 27543.677065 eV Total energy + Delta-G solvation = -4101.566378 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.49680 -40.34705 -39.91325 -38.32520 -36.83627 -34.71207 -34.62055 -33.33165 -31.86135 -31.43931 -31.20495 -30.08447 -27.73611 -26.26004 -25.21589 -24.97174 -23.40672 -22.54103 -21.50798 -21.38878 -19.88722 -18.48506 -18.33216 -18.13122 -17.88281 -17.41975 -17.07968 -16.79657 -16.53939 -16.24761 -16.18389 -15.98268 -15.78640 -15.27038 -14.95461 -14.70023 -14.32477 -14.30012 -14.18368 -14.04554 -13.93376 -13.60660 -13.43126 -13.17048 -13.12410 -12.92573 -12.89445 -12.67293 -12.58653 -12.47799 -12.12435 -12.06607 -11.94557 -11.79868 -11.53736 -11.36055 -11.11195 -10.65317 -10.61290 -10.58291 -9.80985 -9.75053 -9.57952 -8.89791 -8.18316 -6.26714 0.40005 0.54752 1.40798 1.41250 1.53300 1.63680 1.65144 1.92678 2.41675 2.70143 2.98781 3.14154 3.35894 3.60688 3.80579 3.92441 3.94613 4.00983 4.14945 4.21045 4.21926 4.29570 4.34742 4.37557 4.40677 4.50401 4.58602 4.62808 4.64870 4.68045 4.77381 4.81974 4.89359 4.98432 5.00118 5.15269 5.21087 5.22654 5.34198 5.48545 5.55771 5.60494 5.68082 5.68692 5.75033 5.92870 6.06237 6.16416 6.28692 6.34814 6.45845 6.63969 6.88609 7.25601 7.36099 7.42195 8.91950 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009745 B = 0.003181 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.521132 B = 8800.823761 C = 9786.273827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.061 3.939 3 N -0.531 5.531 4 C 0.206 3.794 5 C -0.519 4.519 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.931 5.931 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.270 1.270 13 C 0.035 3.965 14 C 0.524 3.476 15 O -0.545 6.545 16 N -0.601 5.601 17 C 0.124 3.876 18 C -0.162 4.162 19 C 0.523 3.477 20 N -0.839 5.839 21 O -0.587 6.587 22 C 0.153 3.847 23 C -0.111 4.111 24 C -0.109 4.109 25 C -0.123 4.123 26 C -0.121 4.121 27 C -0.137 4.137 28 C -0.117 4.117 29 H 0.056 0.944 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.079 0.921 34 H -0.014 1.014 35 H 0.003 0.997 36 H 0.264 0.736 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.417 0.583 44 H 0.408 0.592 45 H 0.075 0.925 46 H 0.117 0.883 47 H 0.144 0.856 48 H 0.149 0.851 49 H 0.140 0.860 50 H 0.122 0.878 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.819 6.474 24.824 26.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.067 4.067 3 N -0.255 5.255 4 C 0.080 3.920 5 C -0.558 4.558 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.194 1.194 13 C -0.096 4.096 14 C 0.312 3.688 15 O -0.422 6.422 16 N -0.334 5.334 17 C 0.001 3.999 18 C -0.203 4.203 19 C 0.308 3.692 20 N -0.402 5.402 21 O -0.468 6.468 22 C 0.031 3.969 23 C -0.112 4.112 24 C -0.127 4.127 25 C -0.141 4.141 26 C -0.139 4.139 27 C -0.155 4.155 28 C -0.135 4.135 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.004 0.996 35 H 0.021 0.979 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.140 0.860 42 H 0.111 0.889 43 H 0.247 0.753 44 H 0.239 0.761 45 H 0.094 0.906 46 H 0.135 0.865 47 H 0.162 0.838 48 H 0.167 0.833 49 H 0.158 0.842 50 H 0.140 0.860 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.947 5.735 24.709 25.843 hybrid contribution -0.269 0.196 -1.461 1.498 sum 4.678 5.931 23.248 24.444 Atomic orbital electron populations 1.22281 0.98204 1.02310 1.00846 1.22023 0.92692 0.90210 1.01767 1.61953 1.59826 1.02569 1.01113 1.19454 0.93436 0.92532 0.86534 1.21387 1.21326 1.21674 0.91374 0.92821 1.25776 0.95964 0.95549 1.01799 1.70063 1.33204 1.30666 1.23208 0.85488 0.79037 0.78165 0.78580 1.19929 1.20482 1.19423 1.22052 0.98540 0.99169 0.89885 1.20629 0.80850 0.82794 0.84482 1.90611 1.36707 1.29109 1.85780 1.47987 1.46356 1.33615 1.05477 1.21418 0.90497 0.82931 1.05097 1.22196 0.99311 0.92709 1.06049 1.20647 0.88359 0.85634 0.74535 1.43760 1.14312 1.07102 1.75072 1.90754 1.18602 1.86170 1.51278 1.20496 0.91366 0.97152 0.87849 1.20267 0.94840 0.97601 0.98500 1.21256 0.99165 0.94547 0.97740 1.21461 0.92058 1.00574 0.99975 1.21460 0.99717 0.96037 0.96720 1.21363 0.97829 0.97018 0.99265 1.21226 0.93441 1.00095 0.98776 0.92528 0.94177 0.91056 0.92681 0.90318 0.99623 0.97912 0.92718 0.91630 0.88663 0.90579 0.87428 0.85968 0.88927 0.75255 0.76088 0.90646 0.86535 0.83787 0.83299 0.84221 0.85954 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.73 9.26 71.98 0.67 -6.06 16 2 C 0.06 2.61 5.55 86.30 0.48 3.09 16 3 N -0.53 -24.18 4.43 -905.36 -4.01 -28.19 16 4 C 0.21 11.03 4.54 85.56 0.39 11.42 16 5 C -0.52 -30.17 8.40 25.60 0.21 -29.95 16 6 H 0.05 3.17 7.42 -2.91 -0.02 3.14 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 9 Si 0.96 45.28 29.54 68.60 2.03 47.30 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 13 C 0.03 1.25 3.78 85.56 0.32 1.58 16 14 C 0.52 17.07 7.39 87.66 0.65 17.71 16 15 O -0.55 -21.35 13.43 -3.03 -0.04 -21.39 16 16 N -0.60 -13.97 2.46 -826.16 -2.03 -16.00 16 17 C 0.12 2.41 4.54 86.38 0.39 2.80 16 18 C -0.16 -2.69 6.02 29.85 0.18 -2.51 16 19 C 0.52 9.68 8.10 87.66 0.71 10.39 16 20 N -0.84 -9.37 8.87 -173.53 -1.54 -10.91 16 21 O -0.59 -15.87 16.82 -3.04 -0.05 -15.92 16 22 C 0.15 3.00 5.58 85.63 0.48 3.48 16 23 C -0.11 -2.18 5.39 -19.87 -0.11 -2.29 16 24 C -0.11 -1.52 7.54 22.27 0.17 -1.36 16 25 C -0.12 -1.58 10.05 22.27 0.22 -1.35 16 26 C -0.12 -1.89 10.05 22.27 0.22 -1.67 16 27 C -0.14 -2.83 10.05 22.27 0.22 -2.61 16 28 C -0.12 -2.83 9.70 22.27 0.22 -2.62 16 29 H 0.06 1.92 6.35 -2.38 -0.02 1.91 16 30 H 0.04 1.74 6.26 -2.39 -0.01 1.72 16 31 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.05 2.59 7.01 -2.39 -0.02 2.58 16 33 H 0.08 3.27 5.86 -2.39 -0.01 3.26 16 34 H -0.01 -0.78 6.00 -2.39 -0.01 -0.80 16 35 H 0.00 0.16 7.90 -2.39 -0.02 0.14 16 36 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 37 H 0.07 2.26 5.32 -2.39 -0.01 2.24 16 38 H 0.10 3.30 6.95 -2.39 -0.02 3.29 16 39 H 0.08 1.75 6.40 -2.39 -0.02 1.74 16 40 H 0.11 1.69 7.85 -2.39 -0.02 1.67 16 41 H 0.12 1.54 5.26 -2.39 -0.01 1.52 16 42 H 0.09 1.75 7.22 -2.39 -0.02 1.73 16 43 H 0.42 2.40 8.83 -92.71 -0.82 1.58 16 44 H 0.41 3.94 8.93 -92.71 -0.83 3.11 16 45 H 0.08 1.78 7.36 -2.39 -0.02 1.76 16 46 H 0.12 1.50 7.84 -2.39 -0.02 1.48 16 47 H 0.14 1.28 7.73 -2.91 -0.02 1.26 16 48 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 49 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 50 H 0.12 2.34 8.06 -2.91 -0.02 2.31 16 51 H 0.10 2.99 7.59 -2.91 -0.02 2.97 16 Total: -1.00 -77.52 406.22 -0.14 -77.66 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -0.68 Total: 22.07 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 5.89 Total: 0.95 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -7.29 Total: -110.67 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -0.09 Total: -37.32 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -77.52 -0.14 -77.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266925931.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.947 kcal (2) G-P(sol) polarization free energy of solvation -77.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds