Wall clock time and date at job start Wed Apr 1 2020 05:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46892 * 109.47244 * 2 1 4 4 C 1.46900 * 111.00063 * 66.04814 * 3 2 1 5 5 C 1.46904 * 110.99999 * 189.99691 * 3 2 1 6 6 C 1.53011 * 109.46761 * 75.80989 * 5 3 2 7 7 H 1.09000 * 110.88694 * 298.62058 * 6 5 3 8 8 C 1.55158 * 111.00224 * 174.74069 * 6 5 3 9 9 C 1.54367 * 102.92098 * 206.45325 * 8 6 5 10 10 N 1.47024 * 107.28830 * 22.14007 * 9 8 6 11 11 C 1.34775 * 125.64871 * 181.12843 * 10 9 8 12 12 O 1.21584 * 120.00076 * 179.97438 * 11 10 9 13 13 N 1.34780 * 119.99950 * 359.95749 * 11 10 9 14 14 C 1.39941 * 120.00167 * 174.52166 * 13 11 10 15 15 C 1.38959 * 120.03878 * 150.37475 * 14 13 11 16 16 C 1.38149 * 120.06954 * 179.97438 * 15 14 13 17 17 C 1.38168 * 120.13825 * 0.02737 * 16 15 14 18 18 C 1.38906 * 120.07362 * 359.97409 * 17 16 15 19 19 O 1.35744 * 120.03760 * 180.02562 * 18 17 16 20 20 C 1.34835 * 117.00065 * 5.51179 * 19 18 17 21 21 H 1.08002 * 119.99473 * 5.24396 * 20 19 18 22 22 C 1.38651 * 120.00130 * 185.24170 * 20 19 18 23 23 N 1.31557 * 119.99984 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99804 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46990 * 90.00177 * 24 22 20 26 26 H 1.48499 * 109.47212 * 209.99699 * 24 22 20 27 27 H 1.48494 * 109.47684 * 330.00238 * 24 22 20 28 28 C 1.38710 * 120.03364 * 330.10926 * 14 13 11 29 29 C 1.47421 * 108.70148 * 1.09378 * 10 9 8 30 30 H 1.08997 * 109.47519 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47307 * 300.00022 * 1 2 3 32 32 H 1.09002 * 109.46857 * 60.00062 * 1 2 3 33 33 H 1.09002 * 109.46857 * 119.99938 * 2 1 3 34 34 H 1.09006 * 109.47207 * 239.99591 * 2 1 3 35 35 H 1.08994 * 109.47293 * 54.77605 * 4 3 2 36 36 H 1.08998 * 109.47045 * 174.77863 * 4 3 2 37 37 H 1.09006 * 109.47015 * 294.77241 * 4 3 2 38 38 H 1.09002 * 109.47259 * 195.80397 * 5 3 2 39 39 H 1.08997 * 109.47539 * 315.81279 * 5 3 2 40 40 H 1.08999 * 110.72147 * 324.79305 * 8 6 5 41 41 H 1.08999 * 110.71861 * 88.05890 * 8 6 5 42 42 H 1.09001 * 109.84517 * 262.73696 * 9 8 6 43 43 H 1.09004 * 110.03094 * 141.65015 * 9 8 6 44 44 H 0.97001 * 119.99930 * 354.52887 * 13 11 10 45 45 H 1.07999 * 119.96099 * 0.02562 * 15 14 13 46 46 H 1.08005 * 119.93017 * 180.02562 * 16 15 14 47 47 H 1.08008 * 119.96555 * 179.97438 * 17 16 15 48 48 H 0.97006 * 119.99666 * 179.97438 * 23 22 20 49 49 H 1.07999 * 120.07105 * 359.97438 * 28 14 13 50 50 H 1.09002 * 110.36679 * 217.03454 * 29 10 9 51 51 H 1.08993 * 110.46542 * 94.76023 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0668 1.2533 5 6 3.4686 1.4310 -0.2381 6 6 3.7502 1.1751 -1.7201 7 1 3.3977 0.1875 -2.0178 8 6 5.2595 1.3457 -2.0369 9 6 5.2569 1.7349 -3.5307 10 7 3.9280 2.2847 -3.8366 11 6 3.5172 2.7203 -5.0440 12 8 2.3908 3.1569 -5.1818 13 7 4.3550 2.6724 -6.0986 14 6 3.8944 3.0163 -7.3745 15 6 4.7691 3.5620 -8.3062 16 6 4.3151 3.9013 -9.5661 17 6 2.9905 3.6998 -9.9037 18 6 2.1111 3.1547 -8.9769 19 8 0.8100 2.9566 -9.3096 20 6 0.4609 3.2025 -10.5885 21 1 1.2178 3.4590 -11.3150 22 6 -0.8696 3.1261 -10.9709 23 7 -1.2103 3.3665 -12.2187 24 14 -2.1785 2.6818 -9.7144 25 1 -2.6913 3.9201 -9.0749 26 1 -3.2955 1.9755 -10.3917 27 1 -1.5894 1.7969 -8.6776 28 6 2.5653 2.8077 -7.7123 29 6 3.1192 2.2797 -2.6040 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 2.0414 1.4869 2.0982 36 1 2.1233 3.0581 1.2661 37 1 0.5867 2.1616 1.3255 38 1 3.8515 2.4129 0.0402 39 1 3.9601 0.6657 0.3626 40 1 5.6929 2.1420 -1.4318 41 1 5.7942 0.4084 -1.8828 42 1 5.4430 0.8527 -4.1432 43 1 6.0223 2.4870 -3.7219 44 1 5.2774 2.3995 -5.9733 45 1 5.8050 3.7203 -8.0453 46 1 4.9970 4.3249 -10.2886 47 1 2.6385 3.9664 -10.8894 48 1 -2.1411 3.3127 -12.4863 49 1 1.8845 2.3794 -6.9915 50 1 2.0816 2.0362 -2.8322 51 1 3.1802 3.2464 -2.1043 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267339594.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:13 Heat of formation + Delta-G solvation = -10.784171 kcal Electronic energy + Delta-G solvation = -30320.385835 eV Core-core repulsion = 26221.071418 eV Total energy + Delta-G solvation = -4099.314417 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.62436 -39.28604 -38.54125 -37.33527 -36.39111 -34.11368 -32.66400 -32.28424 -30.91626 -29.56571 -29.52866 -28.53253 -26.85345 -25.18077 -24.86347 -23.44064 -22.18858 -21.61941 -21.21155 -20.33298 -19.77771 -18.33570 -17.88944 -17.33017 -16.64565 -16.02519 -15.74467 -15.55020 -15.31843 -15.12242 -14.85372 -14.63659 -14.21311 -13.95045 -13.71907 -13.65098 -13.62531 -13.31193 -13.02534 -12.86470 -12.64247 -12.56688 -12.30396 -12.25992 -12.19430 -12.09933 -11.74306 -11.58105 -11.45530 -11.33248 -11.17743 -11.09809 -10.90503 -10.84203 -10.76331 -10.18049 -9.91690 -9.69219 -9.25410 -8.78125 -8.72813 -8.69742 -7.65870 -7.20507 -6.33261 -3.99248 2.08168 2.32230 2.57972 3.30330 3.33327 3.37774 3.42684 3.53019 3.90325 4.19722 4.32244 4.34484 4.38728 4.60758 4.65331 4.72439 4.82747 4.94914 4.99354 5.02401 5.06683 5.16280 5.18153 5.18694 5.25346 5.27466 5.31423 5.43511 5.45383 5.57023 5.63189 5.64506 5.67204 5.79662 5.84452 5.93106 5.95829 6.06550 6.15910 6.22152 6.39512 6.53947 6.64849 6.66493 6.84096 7.02240 7.20151 7.23960 7.42343 7.69076 7.89336 8.00225 8.12315 8.68004 9.02897 9.67418 10.74307 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010688 B = 0.002551 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.080167 B =10973.136122 C =13267.862700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 N -0.542 5.542 4 C 0.024 3.976 5 C 0.067 3.933 6 C -0.097 4.097 7 H 0.085 0.915 8 C -0.123 4.123 9 C 0.098 3.902 10 N -0.640 5.640 11 C 0.717 3.283 12 O -0.558 6.558 13 N -0.679 5.679 14 C 0.196 3.804 15 C -0.232 4.232 16 C -0.058 4.058 17 C -0.236 4.236 18 C 0.176 3.824 19 O -0.214 6.214 20 C -0.387 4.387 21 H 0.107 0.893 22 C 0.064 3.936 23 N -0.881 5.881 24 Si 0.903 3.097 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.258 1.258 28 C -0.192 4.192 29 C 0.145 3.855 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.023 0.977 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.401 0.599 45 H 0.109 0.891 46 H 0.114 0.886 47 H 0.134 0.866 48 H 0.278 0.722 49 H 0.134 0.866 50 H 0.084 0.916 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.701 -6.399 26.712 31.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.078 4.078 3 N -0.266 5.266 4 C -0.124 4.124 5 C -0.061 4.061 6 C -0.117 4.117 7 H 0.103 0.897 8 C -0.162 4.162 9 C -0.026 4.026 10 N -0.380 5.380 11 C 0.419 3.581 12 O -0.432 6.432 13 N -0.326 5.326 14 C 0.102 3.898 15 C -0.254 4.254 16 C -0.077 4.077 17 C -0.256 4.256 18 C 0.123 3.877 19 O -0.119 6.119 20 C -0.462 4.462 21 H 0.124 0.876 22 C -0.139 4.139 23 N -0.519 5.519 24 Si 0.729 3.271 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.182 1.182 28 C -0.213 4.213 29 C 0.022 3.978 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.042 0.958 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.236 0.764 45 H 0.127 0.873 46 H 0.132 0.868 47 H 0.151 0.849 48 H 0.089 0.911 49 H 0.152 0.848 50 H 0.102 0.898 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.194 -5.883 26.169 29.891 hybrid contribution 0.422 -0.646 1.019 1.279 sum 13.616 -6.529 27.189 31.100 Atomic orbital electron populations 1.21803 0.94667 1.01669 1.02731 1.22152 0.96417 0.88557 1.00655 1.61969 1.13437 1.16258 1.34987 1.22425 1.02162 0.98570 0.89281 1.22060 0.87911 1.01487 0.94693 1.22384 0.94798 0.99897 0.94622 0.89681 1.22640 0.96369 1.02413 0.94774 1.21995 0.85453 0.98411 0.96717 1.47646 1.15099 1.67015 1.08207 1.15450 0.84478 0.79032 0.79097 1.91012 1.18702 1.50768 1.82746 1.42517 1.13640 1.70831 1.05593 1.16949 0.93102 0.97240 0.82513 1.20253 0.98789 1.10975 0.95341 1.20523 0.94939 0.97239 0.94976 1.21282 0.93860 1.08643 1.01784 1.18860 0.84594 0.92090 0.92166 1.83604 1.21227 1.76241 1.30810 1.20780 0.95041 1.48562 0.81866 0.87576 1.24446 0.97060 0.95895 0.96532 1.69653 1.19124 1.47230 1.15939 0.86205 0.80083 0.79638 0.81207 1.19833 1.20855 1.18221 1.20132 0.95231 1.09902 0.96051 1.21924 0.95960 0.97806 0.82092 0.92329 0.92749 0.91471 0.95071 0.90635 0.95793 0.91396 0.90986 0.90427 0.94093 0.90325 0.89955 0.91573 0.91602 0.76443 0.87312 0.86776 0.84872 0.91145 0.84793 0.89785 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.83 37.16 0.37 -0.73 16 2 C 0.05 0.35 5.50 -3.83 -0.02 0.33 16 3 N -0.54 -4.06 4.42 -242.91 -1.07 -5.13 16 4 C 0.02 0.15 9.23 60.06 0.55 0.70 16 5 C 0.07 0.41 4.48 -3.82 -0.02 0.39 16 6 C -0.10 -0.69 3.04 -88.46 -0.27 -0.96 16 7 H 0.08 0.66 6.93 -51.93 -0.36 0.30 16 8 C -0.12 -0.66 6.42 -24.87 -0.16 -0.82 16 9 C 0.10 0.74 6.16 -3.04 -0.02 0.72 16 10 N -0.64 -7.74 3.33 -176.21 -0.59 -8.32 16 11 C 0.72 11.95 8.25 -86.92 -0.72 11.24 16 12 O -0.56 -12.08 14.06 5.29 0.07 -12.00 16 13 N -0.68 -10.31 5.31 -14.24 -0.08 -10.38 16 14 C 0.20 3.71 6.34 -83.71 -0.53 3.18 16 15 C -0.23 -3.99 9.95 -39.35 -0.39 -4.39 16 16 C -0.06 -1.07 10.03 -39.64 -0.40 -1.47 16 17 C -0.24 -5.32 9.13 -39.36 -0.36 -5.68 16 18 C 0.18 4.40 6.64 -39.13 -0.26 4.14 16 19 O -0.21 -6.07 8.58 0.05 0.00 -6.06 16 20 C -0.39 -11.37 9.90 30.88 0.31 -11.06 16 21 H 0.11 3.14 5.51 -52.49 -0.29 2.85 16 22 C 0.06 1.86 5.49 -17.52 -0.10 1.76 16 23 N -0.88 -26.20 13.96 55.48 0.77 -25.43 16 24 Si 0.90 22.96 28.62 -169.99 -4.86 18.09 16 25 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.26 -6.69 7.11 56.52 0.40 -6.29 16 28 C -0.19 -4.40 8.61 -39.21 -0.34 -4.73 16 29 C 0.14 1.58 6.11 -2.53 -0.02 1.56 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.36 6.67 -51.93 -0.35 0.02 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.03 0.20 8.07 -51.93 -0.42 -0.22 16 34 H 0.08 0.55 6.70 -51.93 -0.35 0.20 16 35 H 0.02 0.13 8.07 -51.93 -0.42 -0.29 16 36 H 0.07 0.39 7.85 -51.93 -0.41 -0.01 16 37 H 0.07 0.46 6.73 -51.93 -0.35 0.11 16 38 H 0.08 0.44 7.73 -51.93 -0.40 0.04 16 39 H 0.04 0.22 8.00 -51.93 -0.42 -0.20 16 40 H 0.08 0.35 8.03 -51.93 -0.42 -0.06 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.40 4.44 7.80 -40.82 -0.32 4.13 16 45 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 46 H 0.11 1.75 8.06 -52.48 -0.42 1.32 16 47 H 0.13 3.11 5.70 -52.48 -0.30 2.81 16 48 H 0.28 7.66 8.31 -40.82 -0.34 7.32 16 49 H 0.13 3.29 6.16 -52.49 -0.32 2.96 16 50 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 51 H 0.06 0.70 8.03 -51.93 -0.42 0.29 16 LS Contribution 405.90 15.07 6.12 6.12 Total: -1.00 -34.69 405.90 -10.04 -44.73 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -8.04 Total: 4.21 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.37 Total: -5.81 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.96 Total: -49.27 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.07 Total: -18.07 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.86 Total: 18.09 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.69 -10.04 -44.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267339594.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.943 kcal (2) G-P(sol) polarization free energy of solvation -34.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds