Wall clock time and date at job start Wed Apr 1 2020 05:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46892 * 109.47244 * 2 1 4 4 C 1.46900 * 111.00063 * 66.04814 * 3 2 1 5 5 C 1.46904 * 110.99999 * 189.99691 * 3 2 1 6 6 C 1.53011 * 109.46761 * 75.80989 * 5 3 2 7 7 H 1.09000 * 110.88694 * 298.62058 * 6 5 3 8 8 C 1.55158 * 111.00224 * 174.74069 * 6 5 3 9 9 C 1.54367 * 102.92098 * 206.45325 * 8 6 5 10 10 N 1.47024 * 107.28830 * 22.14007 * 9 8 6 11 11 C 1.34775 * 125.64871 * 181.12843 * 10 9 8 12 12 O 1.21584 * 120.00076 * 179.97438 * 11 10 9 13 13 N 1.34780 * 119.99950 * 359.95749 * 11 10 9 14 14 C 1.39941 * 120.00167 * 174.52166 * 13 11 10 15 15 C 1.38959 * 120.03878 * 150.37475 * 14 13 11 16 16 C 1.38149 * 120.06954 * 179.97438 * 15 14 13 17 17 C 1.38168 * 120.13825 * 0.02737 * 16 15 14 18 18 C 1.38906 * 120.07362 * 359.97409 * 17 16 15 19 19 O 1.35744 * 120.03760 * 180.02562 * 18 17 16 20 20 C 1.34835 * 117.00065 * 5.51179 * 19 18 17 21 21 H 1.08002 * 119.99473 * 5.24396 * 20 19 18 22 22 C 1.38651 * 120.00130 * 185.24170 * 20 19 18 23 23 N 1.31557 * 119.99984 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99804 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46990 * 90.00177 * 24 22 20 26 26 H 1.48499 * 109.47212 * 209.99699 * 24 22 20 27 27 H 1.48494 * 109.47684 * 330.00238 * 24 22 20 28 28 C 1.38710 * 120.03364 * 330.10926 * 14 13 11 29 29 C 1.47421 * 108.70148 * 1.09378 * 10 9 8 30 30 H 1.08997 * 109.47519 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47307 * 300.00022 * 1 2 3 32 32 H 1.09002 * 109.46857 * 60.00062 * 1 2 3 33 33 H 1.09002 * 109.46857 * 119.99938 * 2 1 3 34 34 H 1.09006 * 109.47207 * 239.99591 * 2 1 3 35 35 H 1.08994 * 109.47293 * 54.77605 * 4 3 2 36 36 H 1.08998 * 109.47045 * 174.77863 * 4 3 2 37 37 H 1.09006 * 109.47015 * 294.77241 * 4 3 2 38 38 H 1.09002 * 109.47259 * 195.80397 * 5 3 2 39 39 H 1.08997 * 109.47539 * 315.81279 * 5 3 2 40 40 H 1.08999 * 110.72147 * 324.79305 * 8 6 5 41 41 H 1.08999 * 110.71861 * 88.05890 * 8 6 5 42 42 H 1.09001 * 109.84517 * 262.73696 * 9 8 6 43 43 H 1.09004 * 110.03094 * 141.65015 * 9 8 6 44 44 H 0.97001 * 119.99930 * 354.52887 * 13 11 10 45 45 H 1.07999 * 119.96099 * 0.02562 * 15 14 13 46 46 H 1.08005 * 119.93017 * 180.02562 * 16 15 14 47 47 H 1.08008 * 119.96555 * 179.97438 * 17 16 15 48 48 H 0.97006 * 119.99666 * 179.97438 * 23 22 20 49 49 H 1.07999 * 120.07105 * 359.97438 * 28 14 13 50 50 H 1.09002 * 110.36679 * 217.03454 * 29 10 9 51 51 H 1.08993 * 110.46542 * 94.76023 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0668 1.2533 5 6 3.4686 1.4310 -0.2381 6 6 3.7502 1.1751 -1.7201 7 1 3.3977 0.1875 -2.0178 8 6 5.2595 1.3457 -2.0369 9 6 5.2569 1.7349 -3.5307 10 7 3.9280 2.2847 -3.8366 11 6 3.5172 2.7203 -5.0440 12 8 2.3908 3.1569 -5.1818 13 7 4.3550 2.6724 -6.0986 14 6 3.8944 3.0163 -7.3745 15 6 4.7691 3.5620 -8.3062 16 6 4.3151 3.9013 -9.5661 17 6 2.9905 3.6998 -9.9037 18 6 2.1111 3.1547 -8.9769 19 8 0.8100 2.9566 -9.3096 20 6 0.4609 3.2025 -10.5885 21 1 1.2178 3.4590 -11.3150 22 6 -0.8696 3.1261 -10.9709 23 7 -1.2103 3.3665 -12.2187 24 14 -2.1785 2.6818 -9.7144 25 1 -2.6913 3.9201 -9.0749 26 1 -3.2955 1.9755 -10.3917 27 1 -1.5894 1.7969 -8.6776 28 6 2.5653 2.8077 -7.7123 29 6 3.1192 2.2797 -2.6040 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 2.0414 1.4869 2.0982 36 1 2.1233 3.0581 1.2661 37 1 0.5867 2.1616 1.3255 38 1 3.8515 2.4129 0.0402 39 1 3.9601 0.6657 0.3626 40 1 5.6929 2.1420 -1.4318 41 1 5.7942 0.4084 -1.8828 42 1 5.4430 0.8527 -4.1432 43 1 6.0223 2.4870 -3.7219 44 1 5.2774 2.3995 -5.9733 45 1 5.8050 3.7203 -8.0453 46 1 4.9970 4.3249 -10.2886 47 1 2.6385 3.9664 -10.8894 48 1 -2.1411 3.3127 -12.4863 49 1 1.8845 2.3794 -6.9915 50 1 2.0816 2.0362 -2.8322 51 1 3.1802 3.2464 -2.1043 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267339594.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:11 Heat of formation + Delta-G solvation = -34.654369 kcal Electronic energy + Delta-G solvation = -30321.420924 eV Core-core repulsion = 26221.071418 eV Total energy + Delta-G solvation = -4100.349506 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.86651 -40.73048 -39.66611 -38.44851 -37.72805 -35.60179 -34.44668 -33.50258 -31.59806 -31.19809 -30.24056 -29.98335 -27.60791 -27.19986 -25.69877 -24.29347 -23.58373 -22.88090 -22.18660 -21.17997 -20.84468 -19.86599 -19.61769 -18.88617 -17.59114 -17.12054 -16.89444 -16.63127 -16.55087 -16.31256 -16.03999 -15.82989 -15.64638 -15.57172 -15.25145 -14.63003 -14.37173 -14.30135 -14.24293 -14.20361 -14.07522 -13.83586 -13.42352 -13.25779 -13.15709 -12.95445 -12.80122 -12.73505 -12.67760 -12.50399 -12.25851 -12.07258 -11.99422 -11.96726 -11.75516 -11.58608 -11.41658 -11.36726 -11.04774 -10.87483 -9.75915 -9.34269 -9.22749 -8.85555 -8.51996 -6.23135 0.43936 0.65728 1.25648 1.30542 1.42111 1.48368 2.00935 2.26140 2.74372 2.79848 2.93448 3.12006 3.20873 3.63249 3.69688 3.83272 4.10684 4.12284 4.23566 4.29651 4.36120 4.36941 4.40496 4.46610 4.51246 4.61068 4.62377 4.64898 4.67395 4.70840 4.74945 4.81155 4.86032 4.89896 4.94411 5.00128 5.06091 5.10549 5.12387 5.21886 5.33877 5.34913 5.36685 5.43565 5.46006 5.68511 5.78902 5.90824 5.99754 6.15328 6.16621 6.23369 6.83153 6.84326 7.42153 7.60879 8.59615 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010688 B = 0.002551 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.080167 B =10973.136122 C =13267.862700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 N -0.565 5.565 4 C 0.025 3.975 5 C 0.071 3.929 6 C -0.086 4.086 7 H 0.078 0.922 8 C -0.110 4.110 9 C 0.086 3.914 10 N -0.634 5.634 11 C 0.708 3.292 12 O -0.618 6.618 13 N -0.661 5.661 14 C 0.204 3.796 15 C -0.198 4.198 16 C -0.047 4.047 17 C -0.251 4.251 18 C 0.137 3.863 19 O -0.251 6.251 20 C -0.396 4.396 21 H 0.089 0.911 22 C 0.016 3.984 23 N -0.918 5.918 24 Si 0.960 3.040 25 H -0.270 1.270 26 H -0.258 1.258 27 H -0.275 1.275 28 C -0.210 4.210 29 C 0.142 3.858 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.425 0.575 45 H 0.167 0.833 46 H 0.159 0.841 47 H 0.115 0.885 48 H 0.285 0.715 49 H 0.107 0.893 50 H 0.045 0.955 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.086 -6.880 29.442 35.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.076 4.076 3 N -0.290 5.290 4 C -0.123 4.123 5 C -0.057 4.057 6 C -0.106 4.106 7 H 0.097 0.903 8 C -0.148 4.148 9 C -0.035 4.035 10 N -0.371 5.371 11 C 0.410 3.590 12 O -0.498 6.498 13 N -0.310 5.310 14 C 0.108 3.892 15 C -0.219 4.219 16 C -0.066 4.066 17 C -0.271 4.271 18 C 0.087 3.913 19 O -0.158 6.158 20 C -0.472 4.472 21 H 0.107 0.893 22 C -0.183 4.183 23 N -0.559 5.559 24 Si 0.784 3.216 25 H -0.195 1.195 26 H -0.182 1.182 27 H -0.200 1.200 28 C -0.232 4.232 29 C 0.019 3.981 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.127 0.873 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.265 0.735 45 H 0.184 0.816 46 H 0.176 0.824 47 H 0.133 0.867 48 H 0.095 0.905 49 H 0.125 0.875 50 H 0.063 0.937 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 17.683 -6.396 28.962 34.531 hybrid contribution -0.612 -0.475 0.364 0.856 sum 17.071 -6.871 29.326 34.622 Atomic orbital electron populations 1.21785 0.95291 1.01892 1.01769 1.22115 0.95927 0.88630 1.00902 1.61950 1.14622 1.16540 1.35893 1.22408 1.01856 0.98845 0.89145 1.22066 0.87223 1.02555 0.93883 1.22316 0.96043 0.97770 0.94489 0.90347 1.22667 0.94717 1.04349 0.93110 1.22417 0.83065 0.99371 0.98652 1.47709 1.17244 1.65331 1.06825 1.15735 0.83816 0.78971 0.80459 1.90984 1.21398 1.53435 1.83966 1.42263 1.14608 1.70306 1.03859 1.17094 0.91751 0.95988 0.84331 1.20845 1.00821 1.06604 0.93585 1.21011 0.93429 0.95657 0.96480 1.21342 0.95719 1.09416 1.00644 1.19349 0.84088 0.94097 0.93758 1.83550 1.23419 1.78846 1.30007 1.20772 0.95157 1.48782 0.82528 0.89327 1.25133 0.98747 0.96199 0.98229 1.69708 1.19943 1.49163 1.17098 0.85374 0.78263 0.79253 0.78742 1.19476 1.18243 1.19977 1.20137 0.97084 1.11092 0.94862 1.21998 0.94439 0.99350 0.82329 0.91537 0.92254 0.93826 0.93841 0.91175 0.94744 0.90990 0.91688 0.89583 0.92293 0.88622 0.87331 0.90356 0.89361 0.73506 0.81588 0.82350 0.86715 0.90516 0.87486 0.93653 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.83 71.98 0.71 -1.50 16 2 C 0.05 0.69 5.50 86.30 0.48 1.17 16 3 N -0.57 -7.94 4.42 -922.43 -4.07 -12.01 16 4 C 0.03 0.29 9.23 127.69 1.18 1.47 16 5 C 0.07 0.69 4.48 86.31 0.39 1.08 16 6 C -0.09 -1.04 3.04 -9.40 -0.03 -1.07 16 7 H 0.08 1.08 6.93 -2.39 -0.02 1.07 16 8 C -0.11 -0.69 6.42 31.80 0.20 -0.48 16 9 C 0.09 0.95 6.16 86.74 0.53 1.49 16 10 N -0.63 -14.42 3.33 -829.68 -2.76 -17.18 16 11 C 0.71 23.31 8.25 179.05 1.48 24.78 16 12 O -0.62 -28.08 14.06 -3.98 -0.06 -28.13 16 13 N -0.66 -18.41 5.31 -317.23 -1.68 -20.10 16 14 C 0.20 7.35 6.34 38.13 0.24 7.59 16 15 C -0.20 -5.88 9.95 22.42 0.22 -5.65 16 16 C -0.05 -1.60 10.03 22.23 0.22 -1.38 16 17 C -0.25 -11.53 9.13 22.41 0.20 -11.33 16 18 C 0.14 7.19 6.64 22.56 0.15 7.34 16 19 O -0.25 -15.19 8.58 -22.73 -0.20 -15.39 16 20 C -0.40 -24.79 9.90 67.92 0.67 -24.12 16 21 H 0.09 5.65 5.51 -2.91 -0.02 5.63 16 22 C 0.02 0.96 5.49 84.83 0.47 1.42 16 23 N -0.92 -56.79 13.96 21.61 0.30 -56.49 16 24 Si 0.96 49.59 28.62 68.60 1.96 51.55 16 25 H -0.27 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 27 H -0.27 -14.74 7.11 99.48 0.71 -14.04 16 28 C -0.21 -9.97 8.61 22.51 0.19 -9.78 16 29 C 0.14 3.05 6.11 86.86 0.53 3.58 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.79 6.67 -2.39 -0.02 0.78 16 32 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.04 0.47 8.07 -2.39 -0.02 0.45 16 34 H 0.07 0.99 6.70 -2.38 -0.02 0.97 16 35 H 0.03 0.32 8.07 -2.39 -0.02 0.30 16 36 H 0.07 0.74 7.85 -2.39 -0.02 0.72 16 37 H 0.06 0.81 6.73 -2.38 -0.02 0.79 16 38 H 0.09 0.72 7.73 -2.39 -0.02 0.70 16 39 H 0.06 0.41 8.00 -2.39 -0.02 0.39 16 40 H 0.10 0.35 8.03 -2.39 -0.02 0.33 16 41 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.43 7.46 7.80 -92.71 -0.72 6.74 16 45 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 46 H 0.16 4.02 8.06 -2.91 -0.02 3.99 16 47 H 0.12 5.65 5.70 -2.91 -0.02 5.63 16 48 H 0.29 16.16 8.31 -92.70 -0.77 15.39 16 49 H 0.11 5.65 6.16 -2.91 -0.02 5.63 16 50 H 0.04 1.32 8.04 -2.39 -0.02 1.30 16 51 H 0.06 1.37 8.03 -2.39 -0.02 1.35 16 Total: -1.00 -84.48 405.90 1.55 -82.92 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.22 Total: 20.22 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 7.84 Total: -5.39 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -8.22 Total: -105.79 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -0.25 Total: -43.52 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 1.96 Total: 51.55 kcal Total: -84.48 1.55 -82.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267339594.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.269 kcal (2) G-P(sol) polarization free energy of solvation -84.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds