Wall clock time and date at job start Wed Apr 1 2020 05:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46493 * 109.47244 * 2 1 4 4 C 1.46507 * 119.99921 * 273.84756 * 3 2 1 5 5 C 1.50701 * 109.47249 * 262.38179 * 4 3 2 6 6 H 1.08005 * 119.99683 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99688 * 179.97438 * 5 4 3 8 8 N 1.31504 * 120.00231 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99577 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47255 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47209 * 120.00324 * 9 7 5 12 12 H 1.48494 * 109.46873 * 240.00281 * 9 7 5 13 13 C 1.34784 * 120.00267 * 93.85431 * 3 2 1 14 14 O 1.21358 * 119.99753 * 1.68007 * 13 3 2 15 15 C 1.49348 * 120.00021 * 181.40884 * 13 3 2 16 16 O 1.21383 * 120.00373 * 356.11072 * 15 13 3 17 17 N 1.34774 * 120.00003 * 176.10740 * 15 13 3 18 18 C 1.39730 * 120.00071 * 183.41105 * 17 15 13 19 19 C 1.38951 * 120.07611 * 331.63763 * 18 17 15 20 20 C 1.38068 * 119.92303 * 179.97438 * 19 18 17 21 21 C 1.38321 * 120.07942 * 0.02562 * 20 19 18 22 22 C 1.38267 * 120.14621 * 359.97438 * 21 20 19 23 23 C 1.38122 * 120.08389 * 359.74672 * 22 21 20 24 24 C 1.50694 * 120.04218 * 180.25719 * 23 22 21 25 25 C 1.53001 * 109.46739 * 265.25225 * 24 23 22 26 26 N 1.46903 * 109.46870 * 180.02562 * 25 24 23 27 27 C 1.46898 * 111.00139 * 169.99846 * 26 25 24 28 28 C 1.46899 * 110.99893 * 293.95249 * 26 25 24 29 29 H 1.09004 * 109.47688 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47301 * 300.00241 * 1 2 3 31 31 H 1.09001 * 109.47150 * 59.99848 * 1 2 3 32 32 H 1.08999 * 109.46844 * 239.99754 * 2 1 3 33 33 H 1.09001 * 109.47150 * 120.00152 * 2 1 3 34 34 H 1.09000 * 109.46935 * 22.38835 * 4 3 2 35 35 H 1.09001 * 109.47067 * 142.38571 * 4 3 2 36 36 H 0.96998 * 120.00298 * 179.97438 * 8 7 5 37 37 H 0.97000 * 120.00190 * 3.41384 * 17 15 13 38 38 H 1.07999 * 120.03847 * 359.95335 * 19 18 17 39 39 H 1.08000 * 119.96110 * 179.97438 * 20 19 18 40 40 H 1.07990 * 119.92435 * 179.97438 * 21 20 19 41 41 H 1.08007 * 119.95639 * 180.02562 * 22 21 20 42 42 H 1.08996 * 109.47251 * 25.25224 * 24 23 22 43 43 H 1.09005 * 109.47010 * 145.25425 * 24 23 22 44 44 H 1.09003 * 109.47026 * 299.99740 * 25 24 23 45 45 H 1.08996 * 109.47756 * 60.00268 * 25 24 23 46 46 H 1.09000 * 109.47182 * 60.00298 * 27 26 25 47 47 H 1.09000 * 109.47423 * 180.02562 * 27 26 25 48 48 H 1.09000 * 109.47250 * 299.99868 * 27 26 25 49 49 H 1.09001 * 109.46998 * 60.00060 * 28 26 25 50 50 H 1.09005 * 109.47346 * 179.97438 * 28 26 25 51 51 H 1.08997 * 109.47217 * 300.00206 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1822 2.1001 -1.2659 5 6 3.6235 2.0300 -1.7006 6 1 4.3451 1.5022 -1.0946 7 6 4.0206 2.6386 -2.8722 8 7 3.1417 3.2808 -3.6102 9 14 5.8070 2.5510 -3.4113 10 1 6.5876 1.7757 -2.4139 11 1 5.8925 1.8823 -4.7344 12 1 6.3608 3.9250 -3.5144 13 6 2.3169 1.9904 1.1646 14 8 2.2104 1.3849 2.2109 15 6 2.7848 3.4087 1.1669 16 8 2.9638 3.9905 0.1167 17 7 3.0082 4.0427 2.3350 18 6 3.3770 5.3905 2.3390 19 6 4.0699 5.9261 1.2603 20 6 4.4323 7.2583 1.2674 21 6 4.1067 8.0596 2.3468 22 6 3.4172 7.5299 3.4219 23 6 3.0465 6.1993 3.4190 24 6 2.2900 5.6244 4.5886 25 6 3.2747 4.9756 5.5635 26 7 2.5371 4.4146 6.7034 27 6 3.4127 3.5815 7.5384 28 6 1.9079 5.4778 7.4980 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5503 1.6434 -2.0276 35 1 1.8936 3.1426 -1.1317 36 1 3.4211 3.7094 -4.4343 37 1 2.9130 3.5635 3.1729 38 1 4.3251 5.3009 0.4174 39 1 4.9713 7.6751 0.4294 40 1 4.3918 9.1012 2.3499 41 1 3.1643 8.1584 4.2630 42 1 1.7469 6.4209 5.0970 43 1 1.5845 4.8740 4.2315 44 1 3.8178 4.1789 5.0551 45 1 3.9801 5.7258 5.9206 46 1 4.2357 4.1867 7.9184 47 1 2.8414 3.1783 8.3746 48 1 3.8106 2.7608 6.9415 49 1 1.2117 6.0358 6.8718 50 1 1.3681 5.0349 8.3351 51 1 2.6764 6.1518 7.8765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275713017.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:01 Heat of formation + Delta-G solvation = -20.160220 kcal Electronic energy + Delta-G solvation = -31634.850664 eV Core-core repulsion = 27535.129672 eV Total energy + Delta-G solvation = -4099.720993 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.70852 -39.30803 -37.87697 -37.39652 -35.71784 -34.32436 -32.90269 -32.65897 -30.50310 -29.72158 -28.65707 -27.79612 -27.05778 -25.09541 -24.53892 -23.09527 -22.82716 -21.83521 -21.09399 -20.54083 -19.13101 -17.56700 -16.83610 -16.56180 -16.28389 -15.85454 -15.70049 -15.30076 -15.23591 -14.88553 -14.78833 -14.60077 -14.23792 -13.83053 -13.63339 -13.47005 -13.21703 -12.97167 -12.91970 -12.78419 -12.52969 -12.35141 -12.06881 -12.00733 -11.93653 -11.78145 -11.65698 -11.60479 -11.30183 -10.98895 -10.95143 -10.89544 -10.72671 -10.57212 -10.46463 -10.12697 -9.95781 -9.65642 -8.74373 -8.59883 -8.54080 -8.25048 -7.91715 -7.74351 -6.03388 -4.05947 1.36700 1.57149 2.22113 2.91291 3.29049 3.37006 3.40741 3.69941 3.80942 4.07292 4.12422 4.45103 4.73687 4.86469 4.92842 4.97198 5.03884 5.13818 5.14996 5.27607 5.32925 5.34442 5.40392 5.43903 5.50077 5.53818 5.65160 5.67660 5.69619 5.69954 5.76129 5.80025 5.92143 6.05350 6.16501 6.22055 6.28796 6.47712 6.55393 6.60757 6.67977 6.70145 6.79068 6.79785 6.81214 7.25555 7.37369 7.43945 7.59469 7.86061 8.09984 8.19640 8.36544 8.67835 8.95879 9.56912 11.05380 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009779 B = 0.003704 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.514013 B = 7556.661911 C = 9516.582249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.109 3.891 3 N -0.558 5.558 4 C 0.224 3.776 5 C -0.517 4.517 6 H 0.054 0.946 7 C 0.070 3.930 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.507 3.493 14 O -0.560 6.560 15 C 0.490 3.510 16 O -0.432 6.432 17 N -0.658 5.658 18 C 0.163 3.837 19 C -0.127 4.127 20 C -0.101 4.101 21 C -0.143 4.143 22 C -0.100 4.100 23 C -0.119 4.119 24 C -0.076 4.076 25 C 0.058 3.942 26 N -0.547 5.547 27 C 0.024 3.976 28 C 0.021 3.979 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.261 0.739 37 H 0.416 0.584 38 H 0.156 0.844 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.038 0.962 46 H 0.024 0.976 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.066 0.934 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.642 5.284 17.564 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.014 4.014 3 N -0.288 5.288 4 C 0.105 3.895 5 C -0.555 4.555 6 H 0.072 0.928 7 C -0.133 4.133 8 N -0.527 5.527 9 Si 0.719 3.281 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.209 1.209 13 C 0.289 3.711 14 O -0.441 6.441 15 C 0.271 3.729 16 O -0.299 6.299 17 N -0.306 5.306 18 C 0.067 3.933 19 C -0.147 4.147 20 C -0.119 4.119 21 C -0.162 4.162 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.114 4.114 25 C -0.070 4.070 26 N -0.271 5.271 27 C -0.124 4.124 28 C -0.127 4.127 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.254 0.746 38 H 0.173 0.827 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.056 0.944 46 H 0.042 0.958 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.085 0.915 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -2.007 5.079 16.874 17.736 hybrid contribution 1.653 0.362 0.201 1.704 sum -0.355 5.442 17.075 17.925 Atomic orbital electron populations 1.22111 0.96225 1.01613 1.02248 1.21438 0.93881 0.82943 1.03127 1.48307 1.58990 1.13397 1.08087 1.20044 0.97638 0.93929 0.77882 1.21254 0.93626 1.34051 1.06619 0.92766 1.24797 0.97273 0.94887 0.96327 1.69922 1.33656 1.34814 1.14339 0.86552 0.85293 0.77828 0.78388 1.19927 1.21052 1.20897 1.19709 0.79778 0.87035 0.84555 1.90657 1.55516 1.66386 1.31584 1.20476 0.80013 0.88566 0.83796 1.90906 1.43706 1.65938 1.29394 1.43311 1.67760 1.09267 1.10233 1.17657 0.96472 0.83425 0.95714 1.21732 0.97117 0.96455 0.99367 1.21094 0.99249 0.93537 0.98045 1.21047 1.01054 0.99692 0.94417 1.20714 0.98983 0.93772 0.98432 1.19503 1.02585 0.93747 0.96389 1.20506 0.97274 1.00526 0.93065 1.22171 0.94942 0.98286 0.91573 1.61965 1.33151 1.22204 1.09735 1.22390 0.95289 0.97319 0.97440 1.22447 0.98862 0.93666 0.97774 0.91988 0.92771 0.92211 0.89943 0.90430 0.94989 0.91125 0.92895 0.74630 0.82659 0.85881 0.86422 0.86294 0.90685 0.90068 0.90704 0.94396 0.95785 0.91337 0.91030 0.91020 0.91479 0.95757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 10.24 37.16 0.38 -2.10 16 2 C 0.11 1.94 6.15 -4.05 -0.02 1.91 16 3 N -0.56 -11.90 2.48 -175.61 -0.44 -12.33 16 4 C 0.22 5.53 4.79 -5.19 -0.02 5.51 16 5 C -0.52 -13.96 8.09 -34.44 -0.28 -14.24 16 6 H 0.05 1.50 7.81 -52.48 -0.41 1.09 16 7 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 8 N -0.89 -25.51 13.28 55.43 0.74 -24.77 16 9 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.51 10.67 7.66 -11.63 -0.09 10.58 16 14 O -0.56 -11.74 15.99 5.49 0.09 -11.66 16 15 C 0.49 10.03 7.62 -11.63 -0.09 9.94 16 16 O -0.43 -10.09 9.32 5.47 0.05 -10.04 16 17 N -0.66 -11.13 4.90 -10.29 -0.05 -11.18 16 18 C 0.16 2.62 6.39 -83.74 -0.54 2.08 16 19 C -0.13 -2.19 8.75 -39.38 -0.34 -2.54 16 20 C -0.10 -1.46 10.04 -39.61 -0.40 -1.86 16 21 C -0.14 -1.76 10.04 -39.54 -0.40 -2.16 16 22 C -0.10 -1.19 9.68 -39.61 -0.38 -1.57 16 23 C -0.12 -1.57 5.15 -104.42 -0.54 -2.10 16 24 C -0.08 -0.85 4.65 -27.88 -0.13 -0.98 16 25 C 0.06 0.62 4.86 -3.82 -0.02 0.60 16 26 N -0.55 -5.58 5.02 -251.26 -1.26 -6.84 16 27 C 0.02 0.21 9.57 60.06 0.57 0.79 16 28 C 0.02 0.17 9.32 60.06 0.56 0.73 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 33 H 0.08 1.35 7.29 -51.93 -0.38 0.97 16 34 H 0.03 0.82 8.01 -51.93 -0.42 0.40 16 35 H 0.07 1.90 5.57 -51.93 -0.29 1.61 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.42 6.40 6.32 -40.82 -0.26 6.14 16 38 H 0.16 3.17 5.75 -52.49 -0.30 2.87 16 39 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 40 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 42 H 0.07 0.73 6.47 -51.93 -0.34 0.39 16 43 H 0.08 1.02 7.33 -51.93 -0.38 0.64 16 44 H 0.07 0.86 7.30 -51.93 -0.38 0.48 16 45 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 46 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 47 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 48 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 49 H 0.07 0.57 6.47 -51.93 -0.34 0.23 16 50 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 51 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 LS Contribution 412.40 15.07 6.21 6.21 Total: -1.00 -30.64 412.40 -9.62 -40.26 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -8.11 Total: 7.51 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -1.83 Total: 6.41 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -1.01 Total: -55.13 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: 0.14 Total: -21.69 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -30.64 -9.62 -40.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275713017.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.100 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds